Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

37449122 .. 37461843

Gene Structure 12722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG356600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCCTTTTACCGAAGTTCAGAACCGTTTATACCCCTCTCTTCGACCGTCGAGGCGGCGACGGCCATCGCTCTCATCGACGGCACTTCTGAGGCAATTACGGCTATTAAGGAGCAAGAGAAGCAAATTAACGATTTTAGACAACATTAGTGGGATTATAAGACCTTCAAGATTGACGTTGTTATTGGGTCCACCGAGCTCCGGCAAGACGACGCTACTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGTCATTAGCTCTTGGAGAGAAAGAGACAAGCCTTGTGGTAGAGTACATCATGAAGATTGACGCACCATACTATCGCAACCAATTGCTTCGATGCCCAGTTATTGTTGTAATGAGTGTATCACAGATGAAGGTATGTCTTGGTCTCAAGTTATGCCATGGCTGGGATGGAAAACTGAAGCTCTGTGTCATCCCTTCGGGACTTGATCTTGGACTAACCGGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

159

Amino Acids

17.55

Weight (kDa)

10.62

Isoelectric Point (pI)

68.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
AciI	CCGC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	62
AcuI	CTGAAG	2 cut(s)	236, 449
AcyI	GRCGYC	1 cut(s)	235
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	200, 415
AgsI	TTSAA	1 cut(s)	168
AluBI	AGCT	3 cut(s)	198, 263, 433
AluI	AGCT	3 cut(s)	198, 263, 433
Alw21I	GWGCWC	1 cut(s)	200
Alw26I	GTCTC	2 cut(s)	272, 401
AoxI	GGCC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	242
Bbv12I	GWGCWC	1 cut(s)	200
BccI	CCATC	2 cut(s)	73, 413
BceAI	ACGGC	3 cut(s)	77, 96, 116
BcoDI	GTCTC	2 cut(s)	272, 401
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	189
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	383
BsaHI	GRCGYC	1 cut(s)	235
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	238, 409
BsaWI	WCCGGW	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 415
Bse1I	ACTGG	2 cut(s)	250, 350
BseDI	CCNNGG	2 cut(s)	238, 409
BseGI	GGATG	2 cut(s)	424, 441
BseLI	CCNNNNNNNGG	2 cut(s)	200, 415
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	2 cut(s)	250, 350
BseYI	CCCAGC	1 cut(s)	414
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	64
BsiEI	CGRYCG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	3 cut(s)	201, 231, 471
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	2 cut(s)	200, 415
BsmAI	GTCTC	2 cut(s)	272, 401
BsmFI	GGGAC	1 cut(s)	465
BsnI	GGCC	1 cut(s)	64
Bso31I	GGTCTC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	457
Bsp19I	CCATGG	1 cut(s)	409
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	250, 350
BssECI	CCNNGG	2 cut(s)	238, 409
BssMI	GATC	1 cut(s)	457
BssNI	GRCGYC	1 cut(s)	235
BssT1I	CCWWGG	2 cut(s)	238, 409
Bst4CI	ACNGT	2 cut(s)	26, 48
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	409
BstF5I	GGATG	2 cut(s)	424, 441
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	2 cut(s)	272, 401
BstMBI	GATC	1 cut(s)	457
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 100, 120
BstV2I	GAAGAC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	409
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	424, 441
CciI	TCATGA	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	188
CseI	GACGC	3 cut(s)	220, 243, 323
Csp6I	GTAC	1 cut(s)	298
CspCI	CAANNNNNGTGG	4 cut(s)	130, 165, 270, 305
CviAII	CATG	2 cut(s)	304, 410
CviJI	RGCY	8 cut(s)	64, 103, 198, 224, 263, 285, 414, 433
CviKI_1	RGCY	8 cut(s)	64, 103, 198, 224, 263, 285, 414, 433
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	62
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	198
Eco130I	CCWWGG	2 cut(s)	238, 409
Eco24I	GRGCYC	1 cut(s)	200
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	236, 449
EcoICRI	GAGCTC	1 cut(s)	198
EcoT14I	CCWWGG	2 cut(s)	238, 409
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	2 cut(s)	238, 409
FaeI	CATG	2 cut(s)	307, 413
FaiI	YATR	7 cut(s)	31, 158, 305, 322, 388, 406, 411
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	2 cut(s)	303, 409
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	2 cut(s)	428, 431
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	56
GluI	GCNGC	1 cut(s)	56
GsaI	CCCAGC	1 cut(s)	418
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	3 cut(s)	201, 231, 471
HgaI	GACGC	3 cut(s)	220, 243, 323
Hin1I	GRCGYC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	307, 413
HpaII	CCGG	3 cut(s)	201, 231, 471
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	2 cut(s)	21, 90
Hpy188III	TCNNGA	3 cut(s)	168, 304, 450
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	4 cut(s)	52, 63, 82, 214
HpyAV	CCTTC	3 cut(s)	174, 376, 456
HpyCH4III	ACNGT	2 cut(s)	26, 48
HpyCH4IV	ACGT	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 100, 120
HpyF3I	CTNAG	1 cut(s)	89
HpySE526I	ACGT	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	235
Hsp92II	CATG	2 cut(s)	307, 413
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	2 cut(s)	111, 203
LpnPI	CCDG	5 cut(s)	214, 231, 244, 363, 400
LweI	GCATC	1 cut(s)	335
MaeII	ACGT	1 cut(s)	176
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	3 cut(s)	32, 242, 319
MfeI	CAATTG	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	4 cut(s)	95, 125, 335, 475
MnlI	CCTC	3 cut(s)	45, 46, 84
MseI	TTAA	2 cut(s)	107, 128
MspI	CCGG	3 cut(s)	201, 231, 471
MunI	CAATTG	1 cut(s)	335
MwoI	GCNNNNNNNGC	3 cut(s)	61, 100, 120
NcoI	CCATGG	1 cut(s)	409
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	2 cut(s)	307, 413
NlaIV	GGNNCC	1 cut(s)	189
PagI	TCATGA	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	188
PsrI	GAACNNNNNNTAC	2 cut(s)	14, 46
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SacI	GAGCTC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	107, 128
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	6 cut(s)	166, 179, 200, 265, 387, 435
SfaNI	GCATC	1 cut(s)	335
SinI	GGWCC	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	95, 125, 335, 475
SsiI	CCGC	1 cut(s)	55
SstI	GAGCTC	1 cut(s)	200
StyI	CCWWGG	2 cut(s)	238, 409
TaaI	ACNGT	2 cut(s)	26, 48
TaiI	ACGT	1 cut(s)	179
TaqI	TCGA	4 cut(s)	43, 50, 77, 343
TasI	AATT	4 cut(s)	95, 125, 335, 475
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	58
Tru1I	TTAA	2 cut(s)	107, 128
Tru9I	TTAA	2 cut(s)	107, 128
TspDTI	ATGAA	2 cut(s)	320, 395
VpaK11BI	GGWCC	1 cut(s)	188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.