RLG00000034052
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
35871094 .. 35876504
5411 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034052

Sequence Viewer

Length: 1176 bp
ATGAGAGTCGAGAGCGAGAGCGAGAGCGTGCCCTCTCAAAACCCTAGCGCCGCCTCCTATAGGCTACTTCCAGGGAGGTCTTCGGCACCTCCAGTTCCAAGTTCCTCTCAACAATTATGCCTTGCAGCGGATCGGTTCCATTCTCGGTGCAAGGAATGGTGGGTTGCGGTTTGTGTAGCGGCGATCCTCTTCATTCTCCGGCCGAGACGTAAACGACTTCGTGACCATAGTCTGAGGAGGAGATCTGGGATTTGGTATGGATCGGGGCATCATTCCTCTAGGGTTTGGCCGGCCTTTGATGGCGGGCCGAGGTTGCTGGTTGCGGCGCTGCAGAGCGGTGGCAGAGTCCTGCTTCGGTGGATATCTCTGAGGCGTTTGATGCTGAAGCCGTTGGTGTGGTTCGGCGGTTTGGAGGTAGTTGGTATAGTGGTTGTACTGGGTACGGATGACGTATGCATTCGGCGACGGTCGACGGCGGCAAGGGGTTCCTGTGCTGCTGGACCCGACTCAGCCCATATGTTGGGTTCACCTTCTCCTATGGGTTGGTTTTGGGATCCAGGAGACATTGCACTTCTGAGGCAATTACGGCTATTAAGGAGCAAGAGAAGCAAATTAACGATTTTAGACAACATTAGTGGGATTATAAGACCTTCAAGATTGACGTTGTTATTGGGTCCACCGAGCTCCGGCAAGACGACGCTACTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGATGTCAGGTAGCACAACATACAATGGCCATGGCTTAAACAAGTTTGTGCCGCAGAGGACGTCGGCTTATGTCAGTCAACAGGACTGGTTTGCAGTGGAGATGACTGTAAGGGAGACTCTTGACTTTGCAGGACGGTGTCAAGGTGTTGGATTCAAATATGATATGCTAGTAGAACTAGCAAGAAGAGAAAAGATTGCGGGGATAAAACCCGATGGTGATCTTGATATATTCATGAAGTCATTAGCTCTTGGAGAGAAAGAGACAAGCCTTATGGTAGAGTACATCATGAAGCTGAAGGCATCTTTGCAAGGTTCATCAACGGGTGATATATTGGATCCAGAAGCACATTTTTGTTGGGATTTGGCATTCAAGGAGAGTAGGCATTCTACTCTATGTAATCTTCGCAGAGATCTTGTTTTGGGGCATTGTCGCTGA

Protein Analysis

392

Amino Acids

43.29

Weight (kDa)

10.06

Isoelectric Point (pI)

60.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 208 - 333 8.4e-08 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 644
AatII GACGTC 1 cut(s) 803
AccB1I GGYRCC 1 cut(s) 85
AccB7I CCANNNNNTGG 1 cut(s) 520
AccBSI CCGCTC 1 cut(s) 336
AccI GTMKAC 1 cut(s) 470
AclWI GGATC 7 cut(s) 138, 178, 268, 548, 561, 1070, 1083
AcoI YGGCCR 3 cut(s) 200, 287, 766
AcuI CTGAAG 3 cut(s) 404, 722, 1055
AcyI GRCGYC 2 cut(s) 721, 800
AfaI GTAC 3 cut(s) 435, 442, 1022
AfiI CCNNNNNNNGG 4 cut(s) 60, 127, 520, 686
AgsI TTSAA 3 cut(s) 654, 895, 1111
AjnI CCWGG 2 cut(s) 70, 556
AluBI AGCT 3 cut(s) 684, 986, 1033
AluI AGCT 3 cut(s) 684, 986, 1033
Alw21I GWGCWC 1 cut(s) 686
Alw26I GTCTC 4 cut(s) 199, 555, 848, 995
AlwI GGATC 7 cut(s) 138, 178, 268, 548, 561, 1070, 1083
AoxI GGCC 5 cut(s) 200, 287, 291, 305, 766
ApeKI GCWGC 3 cut(s) 125, 328, 494
AspLEI GCGC 2 cut(s) 50, 328
AspS9I GGNCC 3 cut(s) 305, 500, 674
AsuHPI GGTGA 3 cut(s) 519, 968, 1076
AvaII GGWCC 2 cut(s) 500, 674
BaeGI GKGCMC 1 cut(s) 33
BalI TGGCCA 1 cut(s) 768
BamHI GGATCC 2 cut(s) 553, 1075
BanI GGYRCC 1 cut(s) 85
BanII GRGCYC 1 cut(s) 686
BbsI GAAGAC 2 cut(s) 72, 728
Bbv12I GWGCWC 1 cut(s) 686
BbvI GCAGC 3 cut(s) 137, 315, 481
BccI CCATC 2 cut(s) 293, 947
BceAI ACGGC 3 cut(s) 373, 489, 602
BciT130I CCWGG 2 cut(s) 72, 558
BcoDI GTCTC 4 cut(s) 199, 555, 848, 995
BfaI CTAG 4 cut(s) 45, 279, 908, 917
BfmI CTRYAG 2 cut(s) 58, 329
BfoI RGCGCY 2 cut(s) 51, 329
BglII AGATCT 2 cut(s) 242, 1150
BisI GCNGC 8 cut(s) 51, 126, 180, 324, 329, 477, 495, 791
BlsI GCNGC 8 cut(s) 52, 127, 181, 325, 330, 478, 496, 792
Bme1390I CCNGG 2 cut(s) 72, 558
Bme18I GGWCC 2 cut(s) 500, 674
BmgT120I GGNCC 3 cut(s) 305, 500, 674
BmiI GGNNCC 7 cut(s) 87, 137, 487, 502, 555, 675, 1077
BmrFI CCNGG 2 cut(s) 72, 558
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 3 cut(s) 277, 369, 1049
BmuI ACTGGG 1 cut(s) 446
BoxI GACNNNNGTC 1 cut(s) 228
BpiI GAAGAC 2 cut(s) 72, 728
BpmI CTGGAG 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 957
BsaHI GRCGYC 2 cut(s) 721, 800
BsaJI CCNNGG 4 cut(s) 71, 308, 724, 769
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 127, 520, 686
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 4 cut(s) 92, 441, 736, 830
Bse3DI GCAATG 1 cut(s) 564
Bse8I GATNNNNATC 1 cut(s) 957
BseBI CCWGG 2 cut(s) 72, 558
BseDI CCNNGG 4 cut(s) 71, 308, 724, 769
BseGI GGATG 1 cut(s) 451
BseJI GATNNNNATC 1 cut(s) 957
BseLI CCNNNNNNNGG 4 cut(s) 60, 127, 520, 686
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 4 cut(s) 224, 359, 522, 566
BseNI ACTGG 4 cut(s) 92, 441, 736, 830
BseRI GAGGAG 2 cut(s) 250, 253
BseSI GKGCMC 1 cut(s) 33
BseX3I CGGCCG 1 cut(s) 200
BseXI GCAGC 3 cut(s) 137, 315, 481
Bsh1285I CGRYCG 2 cut(s) 203, 470
BshFI GGCC 5 cut(s) 202, 289, 293, 307, 768
BshNI GGYRCC 1 cut(s) 85
BsiEI CGRYCG 2 cut(s) 203, 470
BsiHKAI GWGCWC 1 cut(s) 686
BsiSI CCGG 4 cut(s) 199, 290, 687, 717
BslI CCNNNNNNNGG 4 cut(s) 60, 127, 520, 686
BsmAI GTCTC 4 cut(s) 199, 555, 848, 995
BsmBI CGTCTC 1 cut(s) 199
BsmI GAATGC 3 cut(s) 456, 1106, 1123
BsnI GGCC 5 cut(s) 202, 289, 293, 307, 768
Bsp1286I GDGCHC 2 cut(s) 33, 686
Bsp143I GATC 8 cut(s) 130, 183, 242, 260, 553, 958, 1075, 1150
Bsp19I CCATGG 1 cut(s) 769
BspANI GGCC 5 cut(s) 202, 289, 293, 307, 768
BspCNI CTCAG 4 cut(s) 225, 360, 521, 567
BspHI TCATGA 2 cut(s) 972, 1026
BspLI GGNNCC 7 cut(s) 87, 137, 487, 502, 555, 675, 1077
BspMAI CTGCAG 1 cut(s) 333
BspPI GGATC 7 cut(s) 138, 178, 268, 548, 561, 1070, 1083
BspT107I GGYRCC 1 cut(s) 85
BsrBI CCGCTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 564
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 4 cut(s) 92, 441, 736, 830
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 4 cut(s) 71, 308, 724, 769
BssMI GATC 8 cut(s) 130, 183, 242, 260, 553, 958, 1075, 1150
BssNI GRCGYC 2 cut(s) 721, 800
BssT1I CCWWGG 2 cut(s) 724, 769
Bst2UI CCWGG 2 cut(s) 72, 558
Bst4CI ACNGT 3 cut(s) 468, 847, 876
Bst6I CTCTTC 2 cut(s) 194, 919
BstACI GRCGYC 2 cut(s) 721, 800
BstC8I GCNNGC 3 cut(s) 29, 291, 305
BstDEI CTNAG 4 cut(s) 233, 368, 508, 575
BstDSI CCRYGG 1 cut(s) 769
BstENI CCTNNNNNAGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 451
BstH2I RGCGCY 2 cut(s) 51, 329
BstHHI GCGC 2 cut(s) 50, 328
BstKTI GATC 8 cut(s) 133, 186, 245, 263, 556, 961, 1078, 1153
BstMAI GTCTC 4 cut(s) 199, 555, 848, 995
BstMBI GATC 8 cut(s) 130, 183, 242, 260, 553, 958, 1075, 1150
BstMCI CGRYCG 2 cut(s) 203, 470
BstMWI GCNNNNNNNGC 4 cut(s) 313, 379, 586, 606
BstNI CCWGG 2 cut(s) 72, 558
BstPAI GACNNNNGTC 1 cut(s) 228
BstSCI CCNGG 2 cut(s) 70, 556
BstSFI CTRYAG 2 cut(s) 58, 329
BstSLI GKGCMC 1 cut(s) 33
BstV1I GCAGC 3 cut(s) 137, 315, 481
BstV2I GAAGAC 2 cut(s) 72, 728
BstX2I RGATCY 4 cut(s) 242, 553, 1075, 1150
BstYI RGATCY 4 cut(s) 242, 553, 1075, 1150
BstZI CGGCCG 1 cut(s) 200
BsuRI GGCC 5 cut(s) 202, 289, 293, 307, 768
BtgI CCRYGG 1 cut(s) 769
BtsCI GGATG 1 cut(s) 451
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 1 cut(s) 840
Cac8I GCNNGC 3 cut(s) 29, 291, 305
CciI TCATGA 2 cut(s) 972, 1026
CfoI GCGC 2 cut(s) 50, 328
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 3 cut(s) 305, 500, 674
CseI GACGC 2 cut(s) 706, 729
Csp6I GTAC 3 cut(s) 434, 441, 1021
CspCI CAANNNNNGTGG 2 cut(s) 616, 651
CviAII CATG 3 cut(s) 770, 973, 1027
CviQI GTAC 3 cut(s) 434, 441, 1021
DdeI CTNAG 4 cut(s) 233, 368, 508, 575
DpnI GATC 8 cut(s) 132, 185, 244, 262, 555, 960, 1077, 1152
DpnII GATC 8 cut(s) 130, 183, 242, 260, 553, 958, 1075, 1150
EaeI YGGCCR 3 cut(s) 200, 287, 766
EagI CGGCCG 1 cut(s) 200
Eam1104I CTCTTC 2 cut(s) 194, 919
EarI CTCTTC 2 cut(s) 194, 919
Ecl136II GAGCTC 1 cut(s) 684
EclXI CGGCCG 1 cut(s) 200
Eco130I CCWWGG 2 cut(s) 724, 769
Eco24I GRGCYC 1 cut(s) 686
Eco32I GATATC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 500, 674
Eco52I CGGCCG 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 684
Eco57I CTGAAG 3 cut(s) 404, 722, 1055
EcoICRI GAGCTC 1 cut(s) 684
EcoNI CCTNNNNNAGG 1 cut(s) 58
EcoRII CCWGG 2 cut(s) 70, 556
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 2 cut(s) 724, 769
EcoT22I ATGCAT 1 cut(s) 458
EcoT38I GRGCYC 1 cut(s) 686
ErhI CCWWGG 2 cut(s) 724, 769
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 3 cut(s) 773, 976, 1030
FatI CATG 3 cut(s) 769, 972, 1026
FauI CCCGC 2 cut(s) 296, 931
FauNDI CATATG 1 cut(s) 516
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 8 cut(s) 51, 126, 180, 324, 329, 477, 495, 791
FokI GGATG 1 cut(s) 458
FriOI GRGCYC 1 cut(s) 686
FseI GGCCGGCC 1 cut(s) 293
Fsp4HI GCNGC 8 cut(s) 51, 126, 180, 324, 329, 477, 495, 791
FspBI CTAG 4 cut(s) 45, 279, 908, 917
GlaI GCGC 2 cut(s) 49, 327
GluI GCNGC 8 cut(s) 51, 126, 180, 324, 329, 477, 495, 791
GsuI CTGGAG 1 cut(s) 75
HaeII RGCGCY 2 cut(s) 51, 329
HaeIII GGCC 5 cut(s) 202, 289, 293, 307, 768
HapII CCGG 4 cut(s) 199, 290, 687, 717
HgaI GACGC 2 cut(s) 706, 729
HhaI GCGC 2 cut(s) 50, 328
Hin1I GRCGYC 2 cut(s) 721, 800
Hin1II CATG 3 cut(s) 773, 976, 1030
Hin6I GCGC 2 cut(s) 48, 326
HinP1I GCGC 2 cut(s) 48, 326
HincII GTYRAC 2 cut(s) 471, 818
HindII GTYRAC 2 cut(s) 471, 818
HinfI GANTC 5 cut(s) 6, 345, 506, 856, 891
HpaII CCGG 4 cut(s) 199, 290, 687, 717
HphI GGTGA 3 cut(s) 519, 968, 1076
Hpy166II GTNNAC 5 cut(s) 212, 471, 527, 677, 818
Hpy188I TCNGA 4 cut(s) 234, 369, 576, 741
Hpy188III TCNNGA 8 cut(s) 10, 221, 654, 860, 962, 973, 1027, 1079
Hpy8I GTNNAC 5 cut(s) 212, 471, 527, 677, 818
Hpy99I CGWCG 4 cut(s) 468, 475, 700, 805
HpyAV CCTTC 3 cut(s) 540, 660, 1030
HpyCH4III ACNGT 3 cut(s) 468, 847, 876
HpyCH4IV ACGT 4 cut(s) 208, 450, 662, 800
HpyCH4V TGCA 8 cut(s) 125, 150, 331, 456, 569, 833, 869, 1048
HpyF10VI GCNNNNNNNGC 4 cut(s) 313, 379, 586, 606
HpyF3I CTNAG 4 cut(s) 233, 368, 508, 575
HpySE526I ACGT 4 cut(s) 208, 450, 662, 800
Hsp92I GRCGYC 2 cut(s) 721, 800
Hsp92II CATG 3 cut(s) 773, 976, 1030
HspAI GCGC 2 cut(s) 48, 326
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
Kzo9I GATC 8 cut(s) 130, 183, 242, 260, 553, 958, 1075, 1150
LmnI GCTCC 2 cut(s) 597, 689
Lsp1109I GCAGC 3 cut(s) 137, 315, 481
LweI GCATC 3 cut(s) 277, 369, 1049
MaeI CTAG 4 cut(s) 45, 279, 908, 917
MaeII ACGT 4 cut(s) 208, 450, 662, 800
MaeIII GTNAC 1 cut(s) 221
MalI GATC 8 cut(s) 132, 185, 244, 262, 555, 960, 1077, 1152
MbiI CCGCTC 1 cut(s) 336
MboI GATC 8 cut(s) 130, 183, 242, 260, 553, 958, 1075, 1150
MboII GAAGA 5 cut(s) 72, 181, 728, 936, 1133
MflI RGATCY 4 cut(s) 242, 553, 1075, 1150
MhlI GDGCHC 2 cut(s) 33, 686
MlsI TGGCCA 1 cut(s) 768
MluCI AATT 3 cut(s) 113, 581, 611
MluNI TGGCCA 1 cut(s) 768
MlyI GAGTC 4 cut(s) 15, 354, 500, 850
MmeI TCCRAC 1 cut(s) 868
Mox20I TGGCCA 1 cut(s) 768
Mph1103I ATGCAT 1 cut(s) 458
MroNI GCCGGC 1 cut(s) 289
MscI TGGCCA 1 cut(s) 768
MseI TTAA 3 cut(s) 593, 614, 776
Msp20I TGGCCA 1 cut(s) 768
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 4 cut(s) 199, 290, 687, 717
MspR9I CCNGG 2 cut(s) 72, 558
Mva1269I GAATGC 3 cut(s) 456, 1106, 1123
MvaI CCWGG 2 cut(s) 72, 558
MwoI GCNNNNNNNGC 4 cut(s) 313, 379, 586, 606
NaeI GCCGGC 1 cut(s) 291
NcoI CCATGG 1 cut(s) 769
NdeI CATATG 1 cut(s) 516
NdeII GATC 8 cut(s) 130, 183, 242, 260, 553, 958, 1075, 1150
NgoMIV GCCGGC 1 cut(s) 289
NlaIII CATG 3 cut(s) 773, 976, 1030
NlaIV GGNNCC 7 cut(s) 87, 137, 487, 502, 555, 675, 1077
NmeAIII GCCGAG 2 cut(s) 228, 333
NmuCI GTSAC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 458
PagI TCATGA 2 cut(s) 972, 1026
PctI GAATGC 3 cut(s) 456, 1106, 1123
PdiI GCCGGC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 891
PflFI GACNNNGTC 1 cut(s) 876
PflMI CCANNNNNTGG 1 cut(s) 520
PfoI TCCNGGA 1 cut(s) 556
PkrI GCNGC 8 cut(s) 52, 127, 181, 325, 330, 478, 496, 792
PleI GAGTC 4 cut(s) 14, 353, 500, 850
PpsI GAGTC 4 cut(s) 14, 353, 500, 850
PshAI GACNNNNGTC 1 cut(s) 228
PsiI TTATAA 1 cut(s) 644
Psp124BI GAGCTC 1 cut(s) 686
Psp6I CCWGG 2 cut(s) 70, 556
PspGI CCWGG 2 cut(s) 70, 556
PspN4I GGNNCC 7 cut(s) 87, 137, 487, 502, 555, 675, 1077
PspPI GGNCC 3 cut(s) 305, 500, 674
PstI CTGCAG 1 cut(s) 333
PsuI RGATCY 4 cut(s) 242, 553, 1075, 1150
PsyI GACNNNGTC 1 cut(s) 876
RigI GGCCGGCC 1 cut(s) 293
RsaI GTAC 3 cut(s) 435, 442, 1022
RsaNI GTAC 3 cut(s) 434, 441, 1021
SacI GAGCTC 1 cut(s) 686
SalI GTCGAC 1 cut(s) 469
SaqAI TTAA 3 cut(s) 593, 614, 776
SatI GCNGC 8 cut(s) 51, 126, 180, 324, 329, 477, 495, 791
Sau3AI GATC 8 cut(s) 130, 183, 242, 260, 553, 958, 1075, 1150
Sau96I GGNCC 3 cut(s) 305, 500, 674
SchI GAGTC 4 cut(s) 15, 354, 500, 850
ScrFI CCNGG 2 cut(s) 72, 558
SduI GDGCHC 2 cut(s) 33, 686
SfaNI GCATC 3 cut(s) 277, 369, 1049
SfcI CTRYAG 2 cut(s) 58, 329
SinI GGWCC 2 cut(s) 500, 674
Sse9I AATT 3 cut(s) 113, 581, 611
SspMI CTAG 4 cut(s) 45, 279, 908, 917
SstI GAGCTC 1 cut(s) 686
StyD4I CCNGG 2 cut(s) 70, 556
StyI CCWWGG 2 cut(s) 724, 769
TaaI ACNGT 3 cut(s) 468, 847, 876
TaiI ACGT 4 cut(s) 211, 453, 665, 803
TaqI TCGA 2 cut(s) 9, 470
TasI AATT 3 cut(s) 113, 581, 611
TatI WGTACW 2 cut(s) 433, 1020
TauI GCSGC 5 cut(s) 53, 182, 326, 479, 793
TfiI GAWTC 1 cut(s) 891
Tru1I TTAA 3 cut(s) 593, 614, 776
Tru9I TTAA 3 cut(s) 593, 614, 776
TscAI CASTG 1 cut(s) 840
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 3 cut(s) 125, 328, 494
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 5 cut(s) 181, 961, 989, 1043, 1044
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 1 cut(s) 840
Tth111I GACNNNGTC 1 cut(s) 876
Van91I CCANNNNNTGG 1 cut(s) 520
VpaK11BI GGWCC 2 cut(s) 500, 674
XagI CCTNNNNNAGG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 470
XspI CTAG 4 cut(s) 45, 279, 908, 917
ZraI GACGTC 1 cut(s) 801
Zsp2I ATGCAT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.