RLG00000034977

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001009
Physical Location & Seq
Reverse (-)
58169470 .. 58169900
431 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034977

Sequence Viewer

Length: 333 bp
ATGAGGGTTCTGGTTCGAACCATGTCACTGCCATATGGAAGCGATGGTCAGTGTGGAAAGCAGAGGCGGAAGGGTAGAGGATCGTGGCAGAGGCTGAGTCCATTCAGGTTGGGGCTGCGCGATCTACATCCAGATCGCAGAGTCTCCTATCTCTGGGCATCAGCGACGAAGGAAGCGGCGTATGGGTGGTTTGTTTCGGCAGCCTGCAATGCATCGGTGTTGGGATCCGACCCGGTCTCAGATCGATGTAGGTTGCTAGGGCCAGGGAGTGGAGGGGATGTTGGTGGAGGTGTGATGGCGGGAATGCTTCCAGTGGTGTCTGACAGCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.76

Weight (kDa)

10.04

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 269
AccII CGCG 1 cut(s) 120
AciI CCGC 3 cut(s) 67, 176, 299
AclWI GGATC 3 cut(s) 88, 219, 232
AfiI CCNNNNNNNGG 2 cut(s) 153, 269
AjnI CCWGG 1 cut(s) 262
Alw26I GTCTC 2 cut(s) 148, 241
AlwI GGATC 3 cut(s) 88, 219, 232
AlwNI CAGNNNCTG 1 cut(s) 94
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 2 cut(s) 115, 200
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 233
AsuII TTCGAA 1 cut(s) 16
BamHI GGATCC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 102, 212
BccI CCATC 2 cut(s) 38, 289
BciT130I CCWGG 1 cut(s) 264
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 148, 241
BfaI CTAG 1 cut(s) 257
BisI GCNGC 3 cut(s) 116, 177, 201
BlsI GCNGC 3 cut(s) 117, 178, 202
Bme1390I CCNGG 2 cut(s) 233, 264
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 226
BmrFI CCNGG 2 cut(s) 233, 264
BmsI GCATC 2 cut(s) 167, 221
Bpu14I TTCGAA 1 cut(s) 16
BpuMI CCSGG 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 269
Bse1I ACTGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 264
BseCI ATCGAT 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 2 cut(s) 127, 283
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 153, 269
BseMI GCAATG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 86, 252
BseNI ACTGG 1 cut(s) 311
BseXI GCAGC 2 cut(s) 102, 212
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 262
BshVI ATCGAT 1 cut(s) 244
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 2 cut(s) 153, 269
BsmAI GTCTC 2 cut(s) 148, 241
BsmI GAATGC 1 cut(s) 309
BsnI GGCC 1 cut(s) 262
Bso31I GGTCTC 1 cut(s) 241
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 5 cut(s) 80, 121, 133, 224, 241
BspACI CCGC 3 cut(s) 67, 176, 299
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 2 cut(s) 87, 251
BspDI ATCGAT 1 cut(s) 244
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 226
BspPI GGATC 3 cut(s) 88, 219, 232
BspT104I TTCGAA 1 cut(s) 16
BspTNI GGTCTC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 214
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 5 cut(s) 80, 121, 133, 224, 241
Bst2UI CCWGG 1 cut(s) 264
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 95, 238
BstF5I GGATG 2 cut(s) 127, 283
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 5 cut(s) 83, 124, 136, 227, 244
BstMAI GTCTC 2 cut(s) 148, 241
BstMBI GATC 5 cut(s) 80, 121, 133, 224, 241
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 2 cut(s) 231, 262
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 2 cut(s) 102, 212
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
Bsu15I ATCGAT 1 cut(s) 244
BsuRI GGCC 1 cut(s) 262
BsuTUI ATCGAT 1 cut(s) 244
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 2 cut(s) 127, 283
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 3 cut(s) 26, 56, 318
Cac8I GCNNGC 1 cut(s) 205
CaiI CAGNNNCTG 1 cut(s) 94
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 244
CviAII CATG 1 cut(s) 22
CviJI RGCY 4 cut(s) 94, 115, 203, 262
CviKI_1 RGCY 4 cut(s) 94, 115, 203, 262
DdeI CTNAG 2 cut(s) 95, 238
DpnI GATC 5 cut(s) 82, 123, 135, 226, 243
DpnII GATC 5 cut(s) 80, 121, 133, 224, 241
EciI GGCGGA 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 214
FaeI CATG 1 cut(s) 25
FaiI YATR 4 cut(s) 23, 34, 36, 183
FatI CATG 1 cut(s) 21
FauI CCCGC 1 cut(s) 292
FauNDI CATATG 1 cut(s) 34
Fnu4HI GCNGC 3 cut(s) 116, 177, 201
FokI GGATG 2 cut(s) 114, 290
Fsp4HI GCNGC 3 cut(s) 116, 177, 201
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 119
GluI GCNGC 3 cut(s) 116, 177, 201
HaeIII GGCC 1 cut(s) 262
HapII CCGG 1 cut(s) 233
HhaI GCGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 2 cut(s) 97, 141
HpaII CCGG 1 cut(s) 233
Hpy188I TCNGA 3 cut(s) 229, 241, 322
Hpy188III TCNNGA 1 cut(s) 131
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 2 cut(s) 64, 163
HpyCH4V TGCA 2 cut(s) 207, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 95, 238
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 5 cut(s) 80, 121, 133, 224, 241
LpnPI CCDG 8 cut(s) 91, 139, 144, 217, 246, 249, 276, 324
Lsp1109I GCAGC 2 cut(s) 102, 212
LweI GCATC 2 cut(s) 167, 221
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 24
MalI GATC 5 cut(s) 82, 123, 135, 226, 243
MboI GATC 5 cut(s) 80, 121, 133, 224, 241
MflI RGATCY 1 cut(s) 224
MlyI GAGTC 2 cut(s) 106, 150
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 5 cut(s) 57, 71, 84, 266, 281
Mph1103I ATGCAT 1 cut(s) 214
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 2 cut(s) 233, 264
Mva1269I GAATGC 1 cut(s) 309
MvaI CCWGG 1 cut(s) 264
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 209
NciI CCSGG 1 cut(s) 233
NdeI CATATG 1 cut(s) 34
NdeII GATC 5 cut(s) 80, 121, 133, 224, 241
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 24
NsiI ATGCAT 1 cut(s) 214
NspV TTCGAA 1 cut(s) 16
PctI GAATGC 1 cut(s) 309
PflFI GACNNNGTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 269
PkrI GCNGC 3 cut(s) 117, 178, 202
PleI GAGTC 2 cut(s) 105, 149
PpsI GAGTC 2 cut(s) 105, 149
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 226
PspPI GGNCC 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 94
PsuI RGATCY 1 cut(s) 224
PsyI GACNNNGTC 1 cut(s) 233
SatI GCNGC 3 cut(s) 116, 177, 201
Sau3AI GATC 5 cut(s) 80, 121, 133, 224, 241
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 2 cut(s) 106, 150
ScrFI CCNGG 2 cut(s) 233, 264
SetI ASST 3 cut(s) 110, 254, 292
SfaNI GCATC 2 cut(s) 167, 221
SfuI TTCGAA 1 cut(s) 16
SsiI CCGC 3 cut(s) 67, 176, 299
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 231, 262
TaqI TCGA 2 cut(s) 16, 244
TauI GCSGC 1 cut(s) 179
TscAI CASTG 3 cut(s) 33, 56, 318
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 2 cut(s) 115, 200
Tsp45I GTSAC 1 cut(s) 24
TspRI CASTG 3 cut(s) 33, 56, 318
Tth111I GACNNNGTC 1 cut(s) 233
Van91I CCANNNNNTGG 1 cut(s) 269
XspI CTAG 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.