RchiOBHm_Chr4g0441021
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
62904182 .. 62907593
3412 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40893

Sequence Viewer

Length: 1317 bp
ATGGCGGCGTCGCAGACCATCGACGTCCGGAACCTCAACCGCGAGCTCGTCCTCAAGAAAGCCCTCGCCACTGACGATCAGGACAACCAGCACCTCCTCGCCGGAATAAAAGAACGCCTCGACAGGTACGCCTACGTTACCGACTCCCCCCACCCCTCTCTCTCTCTCTCGGTTTTTGATGACGAGCTTGATTTTCGTTTTGATTTTGCCAGCAATGACGTTCAAACAGGATCAAGAGCTTTGCCTACTCTCATCAACTATATTCGTGATGGTATAGAGGGTATTTTAACTAGTTTCAGGATTGTTAAACCCAAGCGACGGTCTTTAACGATTTTGAACAACATCAGCGGCCTTATCAAACCCGGAAGGATGACTTTGCTTTTAGGACCCCCAAGTTCTGGCAAATCCACTTTGCTCATGACTCTTGCAGGAAAACTAGACTGCAACTTAAGGAATAGTGGTACCATCACATATAATGGCCATAAGCTTGATGAGTTCTGCGTTCAAAGAACATCTGCTTACATAAGCCAAACAGATAATCACATTGCAGAACTCACCGTAAGAGAAACCTTGGACTTTGCAGCTAGAGTTCAAGGTACAAGCGAAGGTTTTGCAGCGTGCTTGAAACAGCTGGTCAGACTGGAGCAGGAAAGACAAATAAGGCCGGATCCACATATTGCTGCCTTTATGAAGGCATCATCTAGGAAAAGGGTTACTACAGGTGAAATGACAGTTGGACCAAGAAAAGCCCTGTTTATGGATGAAATATCTACTGGACTGGATAGTTCTACTACATACCAAATTGTAAAATGTATTGGGAATTTTGTTCATCAGATGGAAGCTACAGTACTAATGGCTCTGCTTCAACCTGCACCTGAGACATTTGAATTGTTTGATGATCTAGTGCTCCTATCCGAAGGTCACGTGGTAACGTCTAAAAAGGATCAAGCTCAGTACTGGGCTGATTGTTCGAAACCATACACATACCTTTCTGTTTCAGAAATTGCAGAAGCCTTTAAGGAGTCCAGGTTTGGAAGGTCTGTGGATGACACTCTCTCTGCTCCATATCATAAATCTAGCTGTCTTCCTTCGGCTTTGCCAAAAACTAAATATGCAACCTCAAAATGGGAGCTTTGTAAAGCATGCTTTTCACGAGAACTGCTGTTGATCAGCAGGCATAGGTTTCTTTACACATTTAGGACCTGCCAGGTTGCATTTGTTGGATTTGTGACATGCACAACATTTCCTAGATGGAAATTACACCCCACAGATGAAATAATGGCAGCCTTTCTCTTTCTTGCTTGTTCTTTGGGTTAG

Protein Analysis

438

Amino Acids

49.07

Weight (kDa)

8.4

Isoelectric Point (pI)

40.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 112 - 255 2e-12 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 27
Acc36I ACCTGC 2 cut(s) 877, 1211
Acc65I GGTACC 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 461
AccB7I CCANNNNNTGG 1 cut(s) 398
AccII CGCG 1 cut(s) 42
AccIII TCCGGA 1 cut(s) 27
AciI CCGC 3 cut(s) 5, 40, 348
AclWI GGATC 4 cut(s) 238, 662, 675, 951
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 1 cut(s) 820
AcvI CACGTG 1 cut(s) 925
AcyI GRCGYC 2 cut(s) 8, 24
AfaI GTAC 5 cut(s) 128, 463, 598, 849, 956
AfiI CCNNNNNNNGG 4 cut(s) 318, 398, 757, 1125
AflII CTTAAG 1 cut(s) 448
AgsI TTSAA 7 cut(s) 224, 337, 506, 593, 625, 866, 887
AhlI ACTAGT 1 cut(s) 290
AjnI CCWGG 2 cut(s) 1025, 1206
AjuI GAANNNNNNNTTGG 2 cut(s) 717, 749
Alw21I GWGCWC 2 cut(s) 48, 909
Alw26I GTCTC 1 cut(s) 872
AlwI GGATC 4 cut(s) 238, 662, 675, 951
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 3 cut(s) 349, 478, 662
ApeKI GCWGC 4 cut(s) 581, 614, 680, 1283
ApoI RAATTY 1 cut(s) 820
Asp718I GGTACC 1 cut(s) 461
AspS9I GGNCC 3 cut(s) 386, 737, 1200
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 2 cut(s) 547, 734
AsuII TTCGAA 1 cut(s) 971
AvaII GGWCC 3 cut(s) 386, 737, 1200
BalI TGGCCA 1 cut(s) 480
BamHI GGATCC 1 cut(s) 667
BanI GGYRCC 1 cut(s) 461
BanII GRGCYC 1 cut(s) 48
BarI GAAGNNNNNNTAC 2 cut(s) 831, 863
BauI CACGAG 1 cut(s) 1152
BbrPI CACGTG 1 cut(s) 925
BbsI GAAGAC 1 cut(s) 1076
Bbv12I GWGCWC 2 cut(s) 48, 909
BbvI GCAGC 4 cut(s) 593, 626, 667, 1295
BccI CCATC 5 cut(s) 26, 263, 473, 829, 1245
BcgI CGANNNNNNTGC 2 cut(s) 593, 627
BciT130I CCWGG 2 cut(s) 1027, 1208
BclI TGATCA 1 cut(s) 1167
BcnI CCSGG 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 872
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 7 cut(s) 291, 437, 585, 702, 902, 1077, 1248
BfmI CTRYAG 2 cut(s) 717, 843
BfrI CTTAAG 1 cut(s) 448
BfuAI ACCTGC 2 cut(s) 877, 1211
BisI GCNGC 6 cut(s) 6, 349, 582, 615, 681, 1284
BlsI GCNGC 6 cut(s) 7, 350, 583, 616, 682, 1285
BmcAI AGTACT 2 cut(s) 849, 956
Bme1390I CCNGG 3 cut(s) 363, 1027, 1208
Bme18I GGWCC 3 cut(s) 386, 737, 1200
BmgT120I GGNCC 3 cut(s) 386, 737, 1200
BmiI GGNNCC 4 cut(s) 32, 388, 463, 669
BmrFI CCNGG 3 cut(s) 363, 1027, 1208
BmrI ACTGGG 1 cut(s) 967
BmsI GCATC 1 cut(s) 704
BmuI ACTGGG 1 cut(s) 967
BpiI GAAGAC 1 cut(s) 1076
BpmI CTGGAG 1 cut(s) 662
Bpu14I TTCGAA 1 cut(s) 971
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 925
BsaHI GRCGYC 2 cut(s) 8, 24
BsaJI CCNNGG 1 cut(s) 570
BsaWI WCCGGW 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 1013, 1043
Bsc4I CCNNNNNNNGG 4 cut(s) 318, 398, 757, 1125
Bse1I ACTGG 4 cut(s) 645, 778, 783, 962
Bse3DI GCAATG 2 cut(s) 220, 543
BseAI TCCGGA 1 cut(s) 27
BseBI CCWGG 2 cut(s) 1027, 1208
BseDI CCNNGG 1 cut(s) 570
BseGI GGATG 3 cut(s) 375, 766, 1051
BseLI CCNNNNNNNGG 4 cut(s) 318, 398, 757, 1125
BseMI GCAATG 2 cut(s) 220, 543
BseMII CTCAG 2 cut(s) 867, 965
BseNI ACTGG 4 cut(s) 645, 778, 783, 962
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 4 cut(s) 593, 626, 667, 1295
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 3 cut(s) 351, 480, 664
BshNI GGYRCC 1 cut(s) 461
BsiHKAI GWGCWC 2 cut(s) 48, 909
BsiSI CCGG 4 cut(s) 28, 102, 363, 665
BslI CCNNNNNNNGG 4 cut(s) 318, 398, 757, 1125
BsmAI GTCTC 1 cut(s) 872
BsnI GGCC 3 cut(s) 351, 480, 664
Bsp119I TTCGAA 1 cut(s) 971
Bsp1286I GDGCHC 2 cut(s) 48, 909
Bsp13I TCCGGA 1 cut(s) 27
Bsp143I GATC 6 cut(s) 76, 230, 667, 898, 943, 1167
BspACI CCGC 3 cut(s) 5, 40, 348
BspANI GGCC 3 cut(s) 351, 480, 664
BspCNI CTCAG 2 cut(s) 868, 964
BspEI TCCGGA 1 cut(s) 27
BspFNI CGCG 1 cut(s) 42
BspHI TCATGA 1 cut(s) 417
BspLI GGNNCC 4 cut(s) 32, 388, 463, 669
BspMI ACCTGC 2 cut(s) 877, 1211
BspPI GGATC 4 cut(s) 238, 662, 675, 951
BspT104I TTCGAA 1 cut(s) 971
BspT107I GGYRCC 1 cut(s) 461
BspTI CTTAAG 1 cut(s) 448
BsrDI GCAATG 2 cut(s) 220, 543
BsrI ACTGG 4 cut(s) 645, 778, 783, 962
BssECI CCNNGG 1 cut(s) 570
BssMI GATC 6 cut(s) 76, 230, 667, 898, 943, 1167
BssNI GRCGYC 2 cut(s) 8, 24
BssSI CACGAG 1 cut(s) 1152
BssT1I CCWWGG 1 cut(s) 570
Bst2BI CACGAG 1 cut(s) 1152
Bst2UI CCWGG 2 cut(s) 1027, 1208
Bst4CI ACNGT 4 cut(s) 321, 559, 733, 847
BstACI GRCGYC 2 cut(s) 8, 24
BstAFI CTTAAG 1 cut(s) 448
BstBAI YACGTR 1 cut(s) 925
BstBI TTCGAA 1 cut(s) 971
BstC8I GCNNGC 5 cut(s) 44, 211, 619, 1144, 1175
BstDEI CTNAG 2 cut(s) 876, 951
BstF5I GGATG 3 cut(s) 375, 766, 1051
BstFNI CGCG 1 cut(s) 42
BstKTI GATC 6 cut(s) 79, 233, 670, 901, 946, 1170
BstMAI GTCTC 1 cut(s) 872
BstMBI GATC 6 cut(s) 76, 230, 667, 898, 943, 1167
BstNI CCWGG 2 cut(s) 1027, 1208
BstNSI RCATGY 2 cut(s) 1146, 1236
BstSCI CCNGG 3 cut(s) 361, 1025, 1206
BstSFI CTRYAG 2 cut(s) 717, 843
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 4 cut(s) 593, 626, 667, 1295
BstV2I GAAGAC 1 cut(s) 1076
BstX2I RGATCY 1 cut(s) 667
BstYI RGATCY 1 cut(s) 667
BsuRI GGCC 3 cut(s) 351, 480, 664
BtsCI GGATG 3 cut(s) 375, 766, 1051
BtsIMutI CAGTG 1 cut(s) 69
BveI ACCTGC 2 cut(s) 877, 1211
Cac8I GCNNGC 5 cut(s) 44, 211, 619, 1144, 1175
CciI TCATGA 1 cut(s) 417
Cfr13I GGNCC 3 cut(s) 386, 737, 1200
Csp6I GTAC 5 cut(s) 127, 462, 597, 848, 955
CviAII CATG 3 cut(s) 418, 1143, 1233
CviQI GTAC 5 cut(s) 127, 462, 597, 848, 955
DdeI CTNAG 2 cut(s) 876, 951
DpnI GATC 6 cut(s) 78, 232, 669, 900, 945, 1169
DpnII GATC 6 cut(s) 76, 230, 667, 898, 943, 1167
EaeI YGGCCR 1 cut(s) 478
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 570
Eco24I GRGCYC 1 cut(s) 48
Eco47I GGWCC 3 cut(s) 386, 737, 1200
Eco53kI GAGCTC 1 cut(s) 46
Eco72I CACGTG 1 cut(s) 925
EcoICRI GAGCTC 1 cut(s) 46
EcoO109I RGGNCCY 2 cut(s) 386, 1200
EcoRII CCWGG 2 cut(s) 1025, 1206
EcoT14I CCWWGG 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 3 cut(s) 421, 1146, 1236
FalI AAGNNNNNCTT 2 cut(s) 358, 390
FatI CATG 3 cut(s) 417, 1142, 1232
FbaI TGATCA 1 cut(s) 1167
Fnu4HI GCNGC 6 cut(s) 6, 349, 582, 615, 681, 1284
FokI GGATG 3 cut(s) 382, 773, 1058
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 6 cut(s) 6, 349, 582, 615, 681, 1284
FspBI CTAG 7 cut(s) 291, 437, 585, 702, 902, 1077, 1248
GluI GCNGC 6 cut(s) 6, 349, 582, 615, 681, 1284
GsuI CTGGAG 1 cut(s) 662
HaeIII GGCC 3 cut(s) 351, 480, 664
HapII CCGG 4 cut(s) 28, 102, 363, 665
Hin1I GRCGYC 2 cut(s) 8, 24
Hin1II CATG 3 cut(s) 421, 1146, 1236
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 3 cut(s) 143, 421, 1022
HpaII CCGG 4 cut(s) 28, 102, 363, 665
HphI GGTGA 2 cut(s) 547, 734
Hpy188I TCNGA 4 cut(s) 638, 834, 916, 1000
Hpy188III TCNNGA 8 cut(s) 28, 55, 80, 234, 266, 298, 418, 1152
Hpy99I CGWCG 3 cut(s) 13, 26, 321
HpyAV CCTTC 6 cut(s) 360, 599, 685, 911, 1029, 1098
HpyCH4III ACNGT 4 cut(s) 321, 559, 733, 847
HpyCH4IV ACGT 5 cut(s) 24, 135, 219, 924, 932
HpyF3I CTNAG 2 cut(s) 876, 951
HpySE526I ACGT 5 cut(s) 24, 135, 219, 924, 932
Hsp92I GRCGYC 2 cut(s) 8, 24
Hsp92II CATG 3 cut(s) 421, 1146, 1236
Kpn2I TCCGGA 1 cut(s) 27
KpnI GGTACC 1 cut(s) 465
Ksp22I TGATCA 1 cut(s) 1167
Kzo9I GATC 6 cut(s) 76, 230, 667, 898, 943, 1167
LmnI GCTCC 4 cut(s) 643, 912, 1066, 1129
Lsp1109I GCAGC 4 cut(s) 593, 626, 667, 1295
LweI GCATC 1 cut(s) 704
MaeI CTAG 7 cut(s) 291, 437, 585, 702, 902, 1077, 1248
MaeII ACGT 5 cut(s) 24, 135, 219, 924, 932
MaeIII GTNAC 5 cut(s) 136, 712, 920, 928, 1228
MalI GATC 6 cut(s) 78, 232, 669, 900, 945, 1169
MboI GATC 6 cut(s) 76, 230, 667, 898, 943, 1167
MboII GAAGA 1 cut(s) 1076
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 2 cut(s) 48, 909
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 5 cut(s) 801, 820, 887, 1002, 1256
MluNI TGGCCA 1 cut(s) 480
MlyI GAGTC 3 cut(s) 137, 415, 1031
MmeI TCCRAC 2 cut(s) 715, 1201
MnlI CCTC 9 cut(s) 44, 62, 74, 104, 107, 128, 166, 271, 1129
Mox20I TGGCCA 1 cut(s) 480
MroI TCCGGA 1 cut(s) 27
MscI TGGCCA 1 cut(s) 480
MseI TTAA 5 cut(s) 287, 306, 326, 449, 1017
Msp20I TGGCCA 1 cut(s) 480
MspA1I CMGCKG 2 cut(s) 348, 631
MspCI CTTAAG 1 cut(s) 448
MspI CCGG 4 cut(s) 28, 102, 363, 665
MspR9I CCNGG 3 cut(s) 363, 1027, 1208
MvaI CCWGG 2 cut(s) 1027, 1208
MvnI CGCG 1 cut(s) 42
NciI CCSGG 1 cut(s) 363
NdeII GATC 6 cut(s) 76, 230, 667, 898, 943, 1167
NlaIII CATG 3 cut(s) 421, 1146, 1236
NlaIV GGNNCC 4 cut(s) 32, 388, 463, 669
NmuCI GTSAC 2 cut(s) 920, 1228
NspI RCATGY 2 cut(s) 1146, 1236
NspV TTCGAA 1 cut(s) 971
PaeI GCATGC 1 cut(s) 1146
PagI TCATGA 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 398
PkrI GCNGC 6 cut(s) 7, 350, 583, 616, 682, 1285
PleI GAGTC 3 cut(s) 137, 415, 1030
PmaCI CACGTG 1 cut(s) 925
PmlI CACGTG 1 cut(s) 925
PpsI GAGTC 3 cut(s) 137, 415, 1030
Ppu21I YACGTR 1 cut(s) 925
PpuMI RGGWCCY 2 cut(s) 386, 1200
Psp124BI GAGCTC 1 cut(s) 48
Psp5II RGGWCCY 2 cut(s) 386, 1200
Psp6I CCWGG 2 cut(s) 1025, 1206
PspCI CACGTG 1 cut(s) 925
PspGI CCWGG 2 cut(s) 1025, 1206
PspN4I GGNNCC 4 cut(s) 32, 388, 463, 669
PspPI GGNCC 3 cut(s) 386, 737, 1200
PspPPI RGGWCCY 2 cut(s) 386, 1200
PsuI RGATCY 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 631
RsaI GTAC 5 cut(s) 128, 463, 598, 849, 956
RsaNI GTAC 5 cut(s) 127, 462, 597, 848, 955
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 5 cut(s) 287, 306, 326, 449, 1017
SatI GCNGC 6 cut(s) 6, 349, 582, 615, 681, 1284
Sau3AI GATC 6 cut(s) 76, 230, 667, 898, 943, 1167
Sau96I GGNCC 3 cut(s) 386, 737, 1200
ScaI AGTACT 2 cut(s) 849, 956
SchI GAGTC 3 cut(s) 137, 415, 1031
ScrFI CCNGG 3 cut(s) 363, 1027, 1208
SduI GDGCHC 2 cut(s) 48, 909
SfaNI GCATC 1 cut(s) 704
SfcI CTRYAG 2 cut(s) 717, 843
SfuI TTCGAA 1 cut(s) 971
SinI GGWCC 3 cut(s) 386, 737, 1200
SmlI CTYRAG 2 cut(s) 53, 448
SmoI CTYRAG 2 cut(s) 53, 448
SpeI ACTAGT 1 cut(s) 290
SphI GCATGC 1 cut(s) 1146
Sse9I AATT 5 cut(s) 801, 820, 887, 1002, 1256
SsiI CCGC 3 cut(s) 5, 40, 348
SspMI CTAG 7 cut(s) 291, 437, 585, 702, 902, 1077, 1248
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 3 cut(s) 361, 1025, 1206
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 4 cut(s) 321, 559, 733, 847
TaiI ACGT 5 cut(s) 27, 138, 222, 927, 935
TaqI TCGA 3 cut(s) 21, 120, 971
TasI AATT 5 cut(s) 801, 820, 887, 1002, 1256
TatI WGTACW 2 cut(s) 847, 954
TauI GCSGC 2 cut(s) 8, 351
Tru1I TTAA 5 cut(s) 287, 306, 326, 449, 1017
Tru9I TTAA 5 cut(s) 287, 306, 326, 449, 1017
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 2 cut(s) 920, 1228
TseI GCWGC 4 cut(s) 581, 614, 680, 1283
Tsp45I GTSAC 2 cut(s) 920, 1228
TspDTI ATGAA 4 cut(s) 704, 777, 818, 1287
TspRI CASTG 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 398
Vha464I CTTAAG 1 cut(s) 448
VpaK11BI GGWCC 3 cut(s) 386, 737, 1200
XapI RAATTY 1 cut(s) 820
XceI RCATGY 2 cut(s) 1146, 1236
XspI CTAG 7 cut(s) 291, 437, 585, 702, 902, 1077, 1248
ZraI GACGTC 1 cut(s) 25
ZrmI AGTACT 2 cut(s) 849, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.