Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

83658317 .. 83658813

Gene Structure 497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35237

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGCTTGCACTTCTGAGTCAATTACGGCTATTAAGGAGCAAGAGAAGCAAATTAACGATTTTAGACAACATTAGTGGGATTATAAGACCTTCAAGATTGACGTTGTTATTGGGTCCACCGAGCTCCGGCAAGACGACGCTACTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGGTAGCACAACATACAATGGCCATGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

69

Amino Acids

7.35

Weight (kDa)

12.0

Isoelectric Point (pI)

61.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	93
AluBI	AGCT	1 cut(s)	123
AluI	AGCT	1 cut(s)	123
Alw21I	GWGCWC	1 cut(s)	125
AoxI	GGCC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	163, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	163, 201
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	175
BshFI	GGCC	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	126, 156
BslI	CCNNNNNNNGG	1 cut(s)	125
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp19I	CCATGG	1 cut(s)	201
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	163, 201
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	2 cut(s)	163, 201
BstACI	GRCGYC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	14
BstDSI	CCRYGG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	113
CseI	GACGC	2 cut(s)	145, 168
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	5 cut(s)	28, 123, 149, 200, 206
CviKI_1	RGCY	5 cut(s)	28, 123, 149, 200, 206
DdeI	CTNAG	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	163, 201
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	123
EcoT14I	CCWWGG	2 cut(s)	163, 201
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	2 cut(s)	163, 201
FaeI	CATG	1 cut(s)	205
FaiI	YATR	3 cut(s)	83, 192, 203
FatI	CATG	1 cut(s)	201
FriOI	GRGCYC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	2 cut(s)	126, 156
HgaI	GACGC	2 cut(s)	145, 168
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	205
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	126, 156
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	99
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	1 cut(s)	8
HpyF10VI	GCNNNNNNNGC	1 cut(s)	45
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	101
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	205
LmnI	GCTCC	2 cut(s)	36, 128
LpnPI	CCDG	4 cut(s)	139, 156, 164, 169
MaeII	ACGT	1 cut(s)	101
MboII	GAAGA	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	2 cut(s)	20, 50
MluNI	TGGCCA	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	25
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MseI	TTAA	3 cut(s)	32, 53, 208
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	2 cut(s)	126, 156
MwoI	GCNNNNNNNGC	1 cut(s)	45
NcoI	CCATGG	1 cut(s)	201
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	24
PsiI	TTATAA	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	32, 53, 208
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	4 cut(s)	91, 104, 125, 183
SinI	GGWCC	1 cut(s)	113
Sse9I	AATT	2 cut(s)	20, 50
SstI	GAGCTC	1 cut(s)	125
StyI	CCWWGG	2 cut(s)	163, 201
TaiI	ACGT	1 cut(s)	104
TasI	AATT	2 cut(s)	20, 50
Tru1I	TTAA	3 cut(s)	32, 53, 208
Tru9I	TTAA	3 cut(s)	32, 53, 208
VpaK11BI	GGWCC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.