Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

12197806 .. 12211998

Gene Structure 14193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG143100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGCTCCTCTCTTTCAGATTTAGAGGTGAGGTCGCAAACTGAAACAGTCACTTTGAAACCCTTGTTCTTCCATTCTCGAACCCTCTTGTCGATCTATGCCTGGTTACCAGCACATGCACTTCTGAGGCAATCACGGCTATTAAGGAGCAAGAGAAGCAAATTAACGATTTTAGACAACATTGGTGGGATTATAAGACCTTCAAGATTGACGTTGTTATTGGGTCCACCGAGCTCCGGCAAGACGACGCTACTATTGGGAGTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGGTCTATCTAAATTCATGGACTGCAATTTACTTACCTTTGGACAATGTGGGAACGTGGAATGTGAGATATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

125

Amino Acids

13.87

Weight (kDa)

10.66

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	280
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	58, 204
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	2 cut(s)	6, 234
AluI	AGCT	2 cut(s)	6, 234
Alw21I	GWGCWC	2 cut(s)	8, 236
ApoI	RAATTY	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	8, 236
BbsI	GAAGAC	1 cut(s)	287
Bbv12I	GWGCWC	2 cut(s)	8, 236
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	287
BplI	GAGNNNNNCTC	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	280
BsaJI	CCNNGG	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	295
BsiHKAI	GWGCWC	2 cut(s)	8, 236
BsiSI	CCGG	2 cut(s)	237, 276
BslI	CCNNNNNNNGG	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	8, 236
Bsp143I	GATC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	283
BssMI	GATC	1 cut(s)	93
BssNI	GRCGYC	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	49
BstACI	GRCGYC	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	125
BstEII	GGTNACC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 156
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	119
BstPI	GGTNACC	1 cut(s)	105
BstSCI	CCNGG	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	224
CseI	GACGC	2 cut(s)	256, 288
CspCI	CAANNNNNGTGG	2 cut(s)	166, 201
CviAII	CATG	2 cut(s)	116, 315
CviJI	RGCY	4 cut(s)	6, 139, 234, 269
CviKI_1	RGCY	4 cut(s)	6, 139, 234, 269
DdeI	CTNAG	1 cut(s)	125
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
Ecl136II	GAGCTC	2 cut(s)	6, 234
Eco130I	CCWWGG	1 cut(s)	283
Eco24I	GRGCYC	2 cut(s)	8, 236
Eco47I	GGWCC	1 cut(s)	224
Eco53kI	GAGCTC	2 cut(s)	6, 234
Eco57I	CTGAAG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	105
EcoICRI	GAGCTC	2 cut(s)	6, 234
EcoO65I	GGTNACC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	283
EcoT38I	GRGCYC	2 cut(s)	8, 236
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	2 cut(s)	119, 318
FaiI	YATR	5 cut(s)	99, 117, 194, 316, 369
FatI	CATG	2 cut(s)	115, 314
FriOI	GRGCYC	2 cut(s)	8, 236
HapII	CCGG	2 cut(s)	237, 276
HgaI	GACGC	2 cut(s)	256, 288
Hin1I	GRCGYC	1 cut(s)	280
Hin1II	CATG	2 cut(s)	119, 318
HpaII	CCGG	2 cut(s)	237, 276
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	19, 126
Hpy188III	TCNNGA	2 cut(s)	78, 204
Hpy8I	GTNNAC	1 cut(s)	227
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	210
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	2 cut(s)	212, 353
HpyCH4V	TGCA	2 cut(s)	119, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 156
HpyF3I	CTNAG	1 cut(s)	125
HpySE526I	ACGT	2 cut(s)	212, 353
Hsp92I	GRCGYC	1 cut(s)	280
Hsp92II	CATG	2 cut(s)	119, 318
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	3 cut(s)	11, 147, 239
LpnPI	CCDG	7 cut(s)	88, 115, 123, 250, 276, 284, 289
MaeII	ACGT	2 cut(s)	212, 353
MaeIII	GTNAC	2 cut(s)	49, 105
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	2 cut(s)	61, 287
MhlI	GDGCHC	2 cut(s)	8, 236
MluCI	AATT	4 cut(s)	161, 310, 324, 373
MnlI	CCTC	5 cut(s)	19, 19, 24, 95, 120
MseI	TTAA	2 cut(s)	143, 164
MspI	CCGG	2 cut(s)	237, 276
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	136, 156
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	2 cut(s)	119, 318
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	194
Psp124BI	GAGCTC	2 cut(s)	8, 236
Psp6I	CCWGG	1 cut(s)	101
PspEI	GGTNACC	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	224
SacI	GAGCTC	2 cut(s)	8, 236
SaqAI	TTAA	2 cut(s)	143, 164
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	2 cut(s)	8, 236
SetI	ASST	9 cut(s)	8, 30, 35, 202, 215, 236, 303, 337, 356
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	4 cut(s)	161, 310, 324, 373
SstI	GAGCTC	2 cut(s)	8, 236
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	2 cut(s)	215, 356
TaqI	TCGA	2 cut(s)	79, 92
TasI	AATT	4 cut(s)	161, 310, 324, 373
Tru1I	TTAA	2 cut(s)	143, 164
Tru9I	TTAA	2 cut(s)	143, 164
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.