Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

44359432 .. 44361516

Gene Structure 2085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45751

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATTTATAGGCTAATAACACGAGGAACAATTGAAGAAAGAATGATGCAACTGACTAAGAAGAAAATGGTATTGGAACATTTAGTTGTTGGAAGGTTAAAGGCTCGAAACATCAACCAGGAAGAGCTAGATGATATCATTCGATACGGATCAAAGGAGTTATTTGCTGATGAAAATGATGAAGCGGGAAAATCCCGTCAAATTCATTATGATGATGCTGCGATAGAGAGATTACTTGATCGTGAACAAGCTGGGGATGATGACACTCCGTTGGAGGAAGGAGATGAAGATGGATTTTTAAAGGCCTTTAAGGTTGCAAATTTTGAATACATTGACGAAGCAGAGGGCGTAGAAGAGGAGGAACCAAAAAAGGCTGCAGTTGACAGTAGTCCTACTGACAATGATAAATCAAATTTCTGGGAAGATTTGTTAAAGGACAGATATGAAGTGCATAAAGTTGAAGAATTAAACGCTTTAGGCAAAGGGAAGAGAAGTCGTAAGCAGGTAGTTCTTCAAATGTGGTTTTGTTGCAAACTATATATGGGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

183

Amino Acids

21.28

Weight (kDa)

4.8

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1087	PF06465	118 - 170	1.5e-21	CHD subfamily II, DUF1087

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	493
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	1 cut(s)	157
AcsI	RAATTY	3 cut(s)	201, 319, 412
AgsI	TTSAA	4 cut(s)	35, 326, 461, 515
AjnI	CCWGG	1 cut(s)	117
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	2 cut(s)	127, 251
AluI	AGCT	2 cut(s)	127, 251
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	2 cut(s)	218, 374
ApoI	RAATTY	3 cut(s)	201, 319, 412
BauI	CACGAG	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	205, 361
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	119
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	493
BisI	GCNGC	2 cut(s)	219, 375
BlsI	GCNGC	2 cut(s)	220, 376
Bme1390I	CCNGG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	2 cut(s)	36, 205
BoxI	GACNNNNGTC	1 cut(s)	387
BsaBI	GATNNNNATC	1 cut(s)	148
Bse8I	GATNNNNATC	1 cut(s)	148
BseBI	CCWGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	262
BseJI	GATNNNNATC	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	205, 361
BseYI	CCCAGC	1 cut(s)	251
BshFI	GGCC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	149, 238
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	1 cut(s)	305
BspLI	GGNNCC	1 cut(s)	363
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	1 cut(s)	157
BspQI	GCTCTTC	1 cut(s)	117
BssMI	GATC	2 cut(s)	149, 238
BssSI	CACGAG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	386
Bst6I	CTCTTC	3 cut(s)	117, 348, 482
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	2 cut(s)	152, 241
BstMBI	GATC	2 cut(s)	149, 238
BstNI	CCWGG	1 cut(s)	119
BstPAI	GACNNNNGTC	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	2 cut(s)	205, 361
BsuRI	GGCC	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	262
BveI	ACCTGC	1 cut(s)	493
CviJI	RGCY	6 cut(s)	13, 104, 127, 251, 305, 374
CviKI_1	RGCY	6 cut(s)	13, 104, 127, 251, 305, 374
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	151, 240
DpnII	GATC	2 cut(s)	149, 238
DraI	TTTAAA	1 cut(s)	300
Eam1104I	CTCTTC	3 cut(s)	117, 348, 482
EarI	CTCTTC	3 cut(s)	117, 348, 482
Eco147I	AGGCCT	1 cut(s)	305
Eco32I	GATATC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	117
EcoRV	GATATC	1 cut(s)	136
FaiI	YATR	7 cut(s)	9, 210, 444, 453, 538, 540, 542
FauI	CCCGC	1 cut(s)	178
Fnu4HI	GCNGC	2 cut(s)	219, 375
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	2 cut(s)	219, 375
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	2 cut(s)	219, 375
GsaI	CCCAGC	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
Hpy166II	GTNNAC	2 cut(s)	245, 382
Hpy188I	TCNGA	1 cut(s)	551
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	2 cut(s)	245, 382
HpyAV	CCTTC	2 cut(s)	87, 272
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4V	TGCA	5 cut(s)	49, 317, 377, 451, 531
HpyF3I	CTNAG	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	149, 238
LguI	GCTCTTC	1 cut(s)	117
LpnPI	CCDG	5 cut(s)	104, 131, 237, 403, 488
Lsp1109I	GCAGC	2 cut(s)	205, 361
LweI	GCATC	2 cut(s)	36, 205
MaeI	CTAG	1 cut(s)	128
MalI	GATC	2 cut(s)	151, 240
MboI	GATC	2 cut(s)	149, 238
MboII	GAAGA	9 cut(s)	47, 73, 134, 299, 365, 434, 473, 499, 503
MfeI	CAATTG	1 cut(s)	30
MluCI	AATT	5 cut(s)	30, 201, 319, 412, 464
MmeI	TCCRAC	2 cut(s)	70, 252
MnlI	CCTC	5 cut(s)	17, 268, 337, 349, 352
MseI	TTAA	5 cut(s)	98, 299, 309, 431, 467
MslI	CAYNNNNRTG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	119
NdeII	GATC	2 cut(s)	149, 238
NlaIV	GGNNCC	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	220, 376
PshAI	GACNNNNGTC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	363
PstI	CTGCAG	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	5 cut(s)	98, 299, 309, 431, 467
SatI	GCNGC	2 cut(s)	219, 375
Sau3AI	GATC	2 cut(s)	149, 238
ScrFI	CCNGG	1 cut(s)	119
SetI	ASST	5 cut(s)	98, 129, 253, 315, 507
SfaNI	GCATC	2 cut(s)	36, 205
SfcI	CTRYAG	1 cut(s)	375
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	5 cut(s)	30, 201, 319, 412, 464
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	386
TaqI	TCGA	2 cut(s)	106, 142
TasI	AATT	5 cut(s)	30, 201, 319, 412, 464
Tru1I	TTAA	5 cut(s)	98, 299, 309, 431, 467
Tru9I	TTAA	5 cut(s)	98, 299, 309, 431, 467
TseI	GCWGC	2 cut(s)	218, 374
TspDTI	ATGAA	5 cut(s)	186, 194, 195, 300, 459
TspGWI	ACGGA	2 cut(s)	162, 258
XapI	RAATTY	3 cut(s)	201, 319, 412
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.