Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

37051584 .. 37062670

Gene Structure 11087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG314600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCAGTTGATACTTAGCAAATACCATAAATTGGAGGAGCTAGGAGCTTTACTAGACGACATTTTGATGGATATGGAGAGCATACCAGGTATGCAAATCCAACATGCATTGAGAACTTATAGCACTGTAGCACATAGGCTTGCTGCAATGGCTTTTGAATCGAACCATTGTACTCATATTGACGTTGTTATTGGGTCCACCGAGCTCCGGCAAGACGACGCTACTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGATATGCTAGTAGAACTAGCAAGAAGGGAAAAGATTGCGGGGATAAAACCCGATGGTGATCTTGATATATTCATGAAGTCATTAGCTCTTGGAGAGAAAGAGACAAGCCTTGTGGTAGAGTACATCATGAAGGTATTTTCTCGATTCCAGTTATTGAAATTCCTACTATGTTGTATCAAGATTTCTTGTTTTCATTCTCTTTCTAGTACTAACATATTTCTGACAAAGATTTTAGGGTTGGACATATGCGCTGAGACAGGATATTCTTTTGAGTTTTCTGATGCAAGCTTTCTCTGTCTTAGACACAATGGGATGTTTCTAACTTTCTATACTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

199

Amino Acids

22.62

Weight (kDa)

5.62

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	31
AciI	CCGC	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	242
AfaI	GTAC	3 cut(s)	172, 383, 469
AfiI	CCNNNNNNNGG	2 cut(s)	31, 207
AgsI	TTSAA	2 cut(s)	158, 418
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	5 cut(s)	40, 47, 205, 347, 549
AluI	AGCT	5 cut(s)	40, 47, 205, 347, 549
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	356, 509
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	512
AspS9I	GGNCC	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	2 cut(s)	61, 308
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	356, 509
BfaI	CTAG	5 cut(s)	41, 53, 269, 278, 465
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmcAI	AGTACT	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	532
BpiI	GAAGAC	1 cut(s)	249
BsaBI	GATNNNNATC	1 cut(s)	318
BsaHI	GRCGYC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 207
Bse1I	ACTGG	2 cut(s)	257, 409
Bse3DI	GCAATG	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	579
BseJI	GATNNNNATC	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	31, 207
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	2 cut(s)	257, 409
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	130
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	208, 238
BslI	CCNNNNNNNGG	2 cut(s)	31, 207
BsmAI	GTCTC	2 cut(s)	356, 509
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	319
BspACI	CCGC	1 cut(s)	299
BspCNI	CTCAG	1 cut(s)	505
BspHI	TCATGA	2 cut(s)	333, 387
BspLI	GGNNCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	257, 409
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	1 cut(s)	319
BssNI	GRCGYC	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	127
BstACI	GRCGYC	1 cut(s)	242
BstC8I	GCNNGC	2 cut(s)	141, 547
BstDEI	CTNAG	3 cut(s)	14, 513, 560
BstF5I	GGATG	1 cut(s)	579
BstHHI	GCGC	1 cut(s)	512
BstKTI	GATC	1 cut(s)	322
BstMAI	GTCTC	2 cut(s)	356, 509
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNI	CCWGG	1 cut(s)	87
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	579
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	141, 547
CciI	TCATGA	2 cut(s)	333, 387
CfoI	GCGC	1 cut(s)	512
Cfr13I	GGNCC	1 cut(s)	195
CseI	GACGC	2 cut(s)	227, 250
CsiI	ACCWGGT	1 cut(s)	85
Csp6I	GTAC	3 cut(s)	171, 382, 468
CspCI	CAANNNNNGTGG	2 cut(s)	354, 389
CviAII	CATG	3 cut(s)	104, 334, 388
CviJI	RGCY	9 cut(s)	40, 47, 139, 152, 205, 231, 347, 369, 549
CviKI_1	RGCY	9 cut(s)	40, 47, 139, 152, 205, 231, 347, 369, 549
CviQI	GTAC	3 cut(s)	171, 382, 468
DdeI	CTNAG	3 cut(s)	14, 513, 560
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	243
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	245
EcoT22I	ATGCAT	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	3 cut(s)	107, 337, 391
FatI	CATG	3 cut(s)	103, 333, 387
FauI	CCCGC	1 cut(s)	292
FauNDI	CATATG	1 cut(s)	506
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	586
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	5 cut(s)	41, 53, 269, 278, 465
GlaI	GCGC	1 cut(s)	511
GluI	GCNGC	1 cut(s)	144
HapII	CCGG	2 cut(s)	208, 238
HgaI	GACGC	2 cut(s)	227, 250
HhaI	GCGC	1 cut(s)	512
Hin1I	GRCGYC	1 cut(s)	242
Hin1II	CATG	3 cut(s)	107, 337, 391
Hin6I	GCGC	1 cut(s)	510
HinP1I	GCGC	1 cut(s)	510
HindIII	AAGCTT	1 cut(s)	547
HinfI	GANTC	2 cut(s)	158, 405
HpaII	CCGG	2 cut(s)	208, 238
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	1 cut(s)	198
Hpy188I	TCNGA	3 cut(s)	262, 483, 541
Hpy188III	TCNNGA	5 cut(s)	323, 334, 388, 402, 439
Hpy8I	GTNNAC	1 cut(s)	198
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	279, 385
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	4, 94, 107, 146, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	3 cut(s)	14, 513, 560
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	242
Hsp92II	CATG	3 cut(s)	107, 337, 391
HspAI	GCGC	1 cut(s)	510
Kzo9I	GATC	1 cut(s)	319
LmnI	GCTCC	3 cut(s)	37, 44, 210
LpnPI	CCDG	7 cut(s)	72, 99, 221, 238, 251, 422, 504
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	532
MabI	ACCWGGT	1 cut(s)	85
MaeI	CTAG	5 cut(s)	41, 53, 269, 278, 465
MaeII	ACGT	1 cut(s)	183
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	1 cut(s)	249
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	2 cut(s)	29, 419
MmeI	TCCRAC	2 cut(s)	124, 480
MnlI	CCTC	1 cut(s)	28
Mph1103I	ATGCAT	1 cut(s)	109
MslI	CAYNNNNRTG	1 cut(s)	65
MspI	CCGG	2 cut(s)	208, 238
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	1 cut(s)	149
NdeI	CATATG	1 cut(s)	506
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	3 cut(s)	107, 337, 391
NlaIV	GGNNCC	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	107
PagI	TCATGA	2 cut(s)	333, 387
PfeI	GAWTC	2 cut(s)	158, 405
PflMI	CCANNNNNTGG	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	195
RsaI	GTAC	3 cut(s)	172, 383, 469
RsaNI	GTAC	3 cut(s)	171, 382, 468
RseI	CAYNNNNRTG	1 cut(s)	65
SacI	GAGCTC	1 cut(s)	207
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	319
Sau96I	GGNCC	1 cut(s)	195
ScaI	AGTACT	1 cut(s)	469
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	8 cut(s)	42, 49, 91, 186, 207, 349, 396, 551
SexAI	ACCWGGT	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	65
Sse9I	AATT	2 cut(s)	29, 419
SsiI	CCGC	1 cut(s)	299
SspMI	CTAG	5 cut(s)	41, 53, 269, 278, 465
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	1 cut(s)	127
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	161, 403
TasI	AATT	2 cut(s)	29, 419
TatI	WGTACW	3 cut(s)	170, 381, 467
TfiI	GAWTC	2 cut(s)	158, 405
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	4 cut(s)	322, 350, 404, 443
TspRI	CASTG	1 cut(s)	130
Van91I	CCANNNNNTGG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	195
XapI	RAATTY	1 cut(s)	419
XceI	RCATGY	1 cut(s)	107
XspI	CTAG	5 cut(s)	41, 53, 269, 278, 465
ZrmI	AGTACT	1 cut(s)	469
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.