Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7982184.1

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 488

Gene Structure 488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7982184.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

cttcttcttggacctccgggatcaggaaaaacaacattgctaaaagcactttctggcaaactagatagggatcttagggtaactgggaaagtgacttactgcggccatgaatttaacgaatttgtacctcagagaacctctgcttatattagccagcatgatcttcattatggtgagatgacagttcgtgaaacctttgatttctccggacgttgcctaggagttggaacaaggtatgatatactagcagagttgtctagacgggagaaagatgcaggtatcaaaccagatccggcgattgatgcatacatgaaagccacatctgtggccggccaggaaacaagtttgatcacagattatgtcctcaaggtctgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

125

Amino Acids

13.77

Weight (kDa)

7.01

Isoelectric Point (pI)

26.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AccIII	TCCGGA	1 cut(s)	206
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	3 cut(s)	28, 78, 284
AcoI	YGGCCR	3 cut(s)	103, 327, 331
AcsI	RAATTY	2 cut(s)	110, 119
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	333
AleI	CACNNNNGTG	1 cut(s)	323
AlwI	GGATC	3 cut(s)	28, 78, 284
Aor13HI	TCCGGA	1 cut(s)	206
AoxI	GGCC	3 cut(s)	103, 327, 331
ApoI	RAATTY	2 cut(s)	110, 119
AspA2I	CCTAGG	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	11
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	11
AvrII	CCTAGG	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	335
BclI	TGATCA	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	18
BfaI	CTAG	4 cut(s)	62, 218, 245, 258
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	1 cut(s)	103
BlnI	CCTAGG	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	18, 335
Bme18I	GGWCC	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	11
BmrFI	CCNGG	2 cut(s)	18, 335
BmrI	ACTGGG	1 cut(s)	93
BmsI	GCATC	2 cut(s)	262, 292
BmuI	ACTGGG	1 cut(s)	93
BpuEI	CTTGAG	1 cut(s)	350
BpuMI	CCSGG	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	217
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	69
BseAI	TCCGGA	1 cut(s)	206
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	1 cut(s)	217
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMI	GCAATG	1 cut(s)	35
BseMII	CTCAG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	88
BshFI	GGCC	3 cut(s)	105, 329, 333
BsiSI	CCGG	4 cut(s)	17, 207, 293, 330
BslI	CCNNNNNNNGG	1 cut(s)	23
BsnI	GGCC	3 cut(s)	105, 329, 333
Bsp13I	TCCGGA	1 cut(s)	206
Bsp143I	GATC	5 cut(s)	20, 70, 160, 289, 348
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	3 cut(s)	105, 329, 333
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	206
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	3 cut(s)	28, 78, 284
BsrDI	GCAATG	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	5 cut(s)	20, 70, 160, 289, 348
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	184
BstC8I	GCNNGC	2 cut(s)	155, 331
BstDEI	CTNAG	2 cut(s)	74, 129
BstKTI	GATC	5 cut(s)	23, 73, 163, 292, 351
BstMBI	GATC	5 cut(s)	20, 70, 160, 289, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	2 cut(s)	16, 333
BstX2I	RGATCY	2 cut(s)	70, 289
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	2 cut(s)	70, 289
BsuRI	GGCC	3 cut(s)	105, 329, 333
BveI	ACCTGC	1 cut(s)	266
Cac8I	GCNNGC	2 cut(s)	155, 331
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	3 cut(s)	107, 158, 310
CviJI	RGCY	5 cut(s)	105, 153, 317, 329, 333
CviKI_1	RGCY	5 cut(s)	105, 153, 317, 329, 333
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	2 cut(s)	74, 129
DpnI	GATC	5 cut(s)	22, 72, 162, 291, 350
DpnII	GATC	5 cut(s)	20, 70, 160, 289, 348
EaeI	YGGCCR	3 cut(s)	103, 327, 331
Eco130I	CCWWGG	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	3 cut(s)	110, 161, 313
FaiI	YATR	9 cut(s)	108, 147, 159, 171, 237, 242, 307, 311, 360
FatI	CATG	3 cut(s)	106, 157, 309
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	103
FseI	GGCCGGCC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	4 cut(s)	62, 218, 245, 258
GluI	GCNGC	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	105, 329, 333
HapII	CCGG	4 cut(s)	17, 207, 293, 330
Hin1II	CATG	3 cut(s)	110, 161, 313
HpaII	CCGG	4 cut(s)	17, 207, 293, 330
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	4 cut(s)	24, 188, 207, 258
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	275, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	74, 129
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	3 cut(s)	110, 161, 313
Kpn2I	TCCGGA	1 cut(s)	206
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	5 cut(s)	20, 70, 160, 289, 348
LweI	GCATC	2 cut(s)	262, 292
MaeI	CTAG	4 cut(s)	62, 218, 245, 258
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	2 cut(s)	79, 91
MalI	GATC	5 cut(s)	22, 72, 162, 291, 350
MboI	GATC	5 cut(s)	20, 70, 160, 289, 348
MboII	GAAGA	1 cut(s)	155
MflI	RGATCY	2 cut(s)	70, 289
MluCI	AATT	2 cut(s)	110, 119
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	4 cut(s)	24, 138, 148, 374
Mph1103I	ATGCAT	1 cut(s)	307
MroI	TCCGGA	1 cut(s)	206
MroNI	GCCGGC	1 cut(s)	329
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	2 cut(s)	171, 323
MspI	CCGG	4 cut(s)	17, 207, 293, 330
MspR9I	CCNGG	2 cut(s)	18, 335
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	302
NaeI	GCCGGC	1 cut(s)	331
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	5 cut(s)	20, 70, 160, 289, 348
NgoMIV	GCCGGC	1 cut(s)	329
NlaIII	CATG	3 cut(s)	110, 161, 313
NmuCI	GTSAC	1 cut(s)	91
NsiI	ATGCAT	1 cut(s)	307
OliI	CACNNNNGTG	1 cut(s)	323
PdiI	GCCGGC	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspPI	GGNCC	1 cut(s)	11
PsuI	RGATCY	2 cut(s)	70, 289
RigI	GGCCGGCC	1 cut(s)	333
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
RseI	CAYNNNNRTG	2 cut(s)	171, 323
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	5 cut(s)	20, 70, 160, 289, 348
Sau96I	GGNCC	1 cut(s)	11
ScrFI	CCNGG	2 cut(s)	18, 335
SetI	ASST	8 cut(s)	16, 130, 140, 197, 214, 236, 280, 372
SfaNI	GCATC	2 cut(s)	262, 292
SinI	GGWCC	1 cut(s)	11
SmiMI	CAYNNNNRTG	2 cut(s)	171, 323
SmlI	CTYRAG	1 cut(s)	365
SmoI	CTYRAG	1 cut(s)	365
Sse9I	AATT	2 cut(s)	110, 119
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	4 cut(s)	62, 218, 245, 258
StyD4I	CCNGG	2 cut(s)	16, 333
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	214
TasI	AATT	2 cut(s)	110, 119
TauI	GCSGC	1 cut(s)	105
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	123, 155, 326
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	2 cut(s)	110, 119
XbaI	TCTAGA	1 cut(s)	257
XmaJI	CCTAGG	1 cut(s)	217
XspI	CTAG	4 cut(s)	62, 218, 245, 258
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.