Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

64687054 .. 64702575

Gene Structure 15522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG414900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGATGCTTTCTGGGACTTGAAACTTGATCAATTGGTCTGCATTGATTGGCCGGAGTCAGCTGACCGGTGCAAAAGGCCGGCCGGCTACATTTGTCGGACTTGGTCTGAGAGATTGACGTTGTTATTGGGTCCACCGAGCTCCGGCAAGACGACGCTACTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGGGGACTTTTGCAGGAGAAGACGTTTCAAAATCTCCAAGCGTGCATTGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

83

Amino Acids

9.05

Weight (kDa)

7.66

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	50, 81
AcuI	CTGAAG	1 cut(s)	179
AcyI	GRCGYC	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgeI	ACCGGT	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	22, 225
AluBI	AGCT	2 cut(s)	62, 141
AluI	AGCT	2 cut(s)	62, 141
Alw21I	GWGCWC	1 cut(s)	143
AoxI	GGCC	3 cut(s)	50, 77, 81
AsiGI	ACCGGT	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	143
BbsI	GAAGAC	2 cut(s)	185, 222
Bbv12I	GWGCWC	1 cut(s)	143
BclI	TGATCA	1 cut(s)	28
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	132
BpiI	GAAGAC	2 cut(s)	185, 222
BsaHI	GRCGYC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	181
BsaWI	WCCGGW	1 cut(s)	66
BsaXI	ACNNNNNCTCC	2 cut(s)	204, 234
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse118I	RCCGGY	3 cut(s)	66, 79, 83
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	193
BseX3I	CGGCCG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	52, 79, 83
BshTI	ACCGGT	1 cut(s)	66
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	6 cut(s)	53, 67, 80, 84, 144, 174
BslFI	GGGAC	2 cut(s)	29, 214
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	29, 214
BsnI	GGCC	3 cut(s)	52, 79, 83
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	28
BspANI	GGCC	3 cut(s)	52, 79, 83
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	132
BsrDI	GCAATG	1 cut(s)	241
BsrFI	RCCGGY	3 cut(s)	66, 79, 83
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	3 cut(s)	66, 79, 83
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	178
BssT1I	CCWWGG	1 cut(s)	181
BstACI	GRCGYC	1 cut(s)	178
BstC8I	GCNNGC	3 cut(s)	81, 85, 239
BstDEI	CTNAG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	28
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	243
BstV2I	GAAGAC	2 cut(s)	185, 222
BstZI	CGGCCG	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	52, 79, 83
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	3 cut(s)	81, 85, 239
Cfr10I	RCCGGY	3 cut(s)	66, 79, 83
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	2 cut(s)	163, 186
CspAI	ACCGGT	1 cut(s)	66
CviJI	RGCY	7 cut(s)	52, 62, 79, 83, 87, 141, 167
CviKI_1	RGCY	7 cut(s)	52, 62, 79, 83, 87, 141, 167
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	2 cut(s)	50, 81
EagI	CGGCCG	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	141
EclXI	CGGCCG	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	131
Eco52I	CGGCCG	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	141
Eco57I	CTGAAG	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	181
FaqI	GGGAC	2 cut(s)	29, 214
FbaI	TGATCA	1 cut(s)	28
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	143
FseI	GGCCGGCC	1 cut(s)	83
HaeIII	GGCC	3 cut(s)	52, 79, 83
HapII	CCGG	6 cut(s)	53, 67, 80, 84, 144, 174
HgaI	GACGC	2 cut(s)	163, 186
Hin1I	GRCGYC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	6 cut(s)	53, 67, 80, 84, 144, 174
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	2 cut(s)	99, 109
Hpy8I	GTNNAC	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	157
HpyCH4IV	ACGT	2 cut(s)	119, 219
HpyCH4V	TGCA	5 cut(s)	42, 72, 209, 241, 246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	243
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	2 cut(s)	119, 219
Hsp92I	GRCGYC	1 cut(s)	178
KroI	GCCGGC	2 cut(s)	79, 83
KroNI	GCCGGC	2 cut(s)	81, 85
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	9 cut(s)	66, 80, 93, 97, 157, 174, 182, 187, 195
MaeII	ACGT	2 cut(s)	119, 219
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	2 cut(s)	185, 227
MfeI	CAATTG	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	77
MroNI	GCCGGC	2 cut(s)	79, 83
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	6 cut(s)	53, 67, 80, 84, 144, 174
MunI	CAATTG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	243
NaeI	GCCGGC	2 cut(s)	81, 85
NdeII	GATC	1 cut(s)	28
NgoMIV	GCCGGC	2 cut(s)	79, 83
NlaIV	GGNNCC	1 cut(s)	132
PdiI	GCCGGC	2 cut(s)	81, 85
PflFI	GACNNNGTC	1 cut(s)	103
PinAI	ACCGGT	1 cut(s)	66
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	131
PsyI	GACNNNGTC	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	62
RigI	GGCCGGCC	1 cut(s)	83
SacI	GAGCTC	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	4 cut(s)	64, 122, 143, 222
SinI	GGWCC	1 cut(s)	131
Sse9I	AATT	1 cut(s)	32
SstI	GAGCTC	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	181
TaiI	ACGT	2 cut(s)	122, 222
TasI	AATT	1 cut(s)	32
Tth111I	GACNNNGTC	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.