Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Reverse (-)

60455811 .. 60458272

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG388600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGGCGTCGCAGACCATCGACGTCCGGAACCTCAACCGCGAGCTCGTCCTCAAGAAAGCCCTCGCCACTGACGATCAGGACAACCAGCACCTCCTCGCCGGAATAAAAGAACGCCTCGACAGGATTGTTAAACCCAAGCGACGGTCTTTAACGATTTTGAACAACATCAGCGGCCTTATCAAACCCGGAAGGATGACTTTGCTTTTAGGACCCCCAAGTTCTGGCAAATCCACTTTGCTCATGACTCTTGCAGGAAAACTAGACTGCAACTTAAGGAATAGTGGTACCATCACATATAATGGCCATAAGCTTGATGAGTTCTGCGTTCAAAGAACATCTGCTTACATAAGCCAAACAGATAATCACATTGCAGAACTCACCGTAAGAGAAACCTTGGACTTTGCAGCTAGAGTTCAAGGTACAAGCGAAGGTTTTGCAGCGTGCTTGAAACAGCTGGTCAGACTGGAGCAGGAAAGACAAATAAGGCCGGATCCACATATTGCTGCCTTTATGAAGGCATCATCTGTTGGTAAAATTTCAACAGATTATGTTCTGTTCAGATACAATCATCGGAAACAACATGATAAGAGGGGTTTCTGGGGGACAGAGGAAAAGGGTTACTACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006855 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042221 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

210

Amino Acids

23.73

Weight (kDa)

9.73

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	54 - 151	1.1e-12	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	27
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	287
AccB7I	CCANNNNNTGG	1 cut(s)	224
AccII	CGCG	1 cut(s)	42
AccIII	TCCGGA	1 cut(s)	27
AciI	CCGC	3 cut(s)	5, 40, 174
AclWI	GGATC	2 cut(s)	488, 501
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	537
AcyI	GRCGYC	2 cut(s)	8, 24
AfaI	GTAC	2 cut(s)	289, 424
AfiI	CCNNNNNNNGG	2 cut(s)	144, 224
AflII	CTTAAG	1 cut(s)	274
AgsI	TTSAA	5 cut(s)	163, 332, 419, 451, 543
AluBI	AGCT	4 cut(s)	46, 313, 410, 457
AluI	AGCT	4 cut(s)	46, 313, 410, 457
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	488, 501
Aor13HI	TCCGGA	1 cut(s)	27
AoxI	GGCC	3 cut(s)	175, 304, 488
ApeKI	GCWGC	3 cut(s)	407, 440, 506
ApoI	RAATTY	1 cut(s)	537
Asp718I	GGTACC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	373
AvaII	GGWCC	1 cut(s)	212
BalI	TGGCCA	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	493
BanI	GGYRCC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	3 cut(s)	419, 452, 493
BccI	CCATC	2 cut(s)	26, 299
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BcnI	CCSGG	1 cut(s)	189
BfaI	CTAG	2 cut(s)	263, 411
BfmI	CTRYAG	1 cut(s)	625
BfrI	CTTAAG	1 cut(s)	274
BisI	GCNGC	5 cut(s)	6, 175, 408, 441, 507
BlsI	GCNGC	5 cut(s)	7, 176, 409, 442, 508
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	4 cut(s)	32, 214, 289, 495
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	189
BsaHI	GRCGYC	2 cut(s)	8, 24
BsaJI	CCNNGG	1 cut(s)	396
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 224
Bse1I	ACTGG	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	144, 224
BseMI	GCAATG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	471
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	419, 452, 493
Bsh1236I	CGCG	1 cut(s)	42
BshFI	GGCC	3 cut(s)	177, 306, 490
BshNI	GGYRCC	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	4 cut(s)	28, 102, 189, 491
BslFI	GGGAC	1 cut(s)	619
BslI	CCNNNNNNNGG	2 cut(s)	144, 224
BsmFI	GGGAC	1 cut(s)	619
BsnI	GGCC	3 cut(s)	177, 306, 490
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp13I	TCCGGA	1 cut(s)	27
Bsp143I	GATC	2 cut(s)	76, 493
BspACI	CCGC	3 cut(s)	5, 40, 174
BspANI	GGCC	3 cut(s)	177, 306, 490
BspEI	TCCGGA	1 cut(s)	27
BspFNI	CGCG	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	243
BspLI	GGNNCC	4 cut(s)	32, 214, 289, 495
BspPI	GGATC	2 cut(s)	488, 501
BspT107I	GGYRCC	1 cut(s)	287
BspTI	CTTAAG	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	2 cut(s)	76, 493
BssNI	GRCGYC	2 cut(s)	8, 24
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	147, 385
BstACI	GRCGYC	2 cut(s)	8, 24
BstAFI	CTTAAG	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	44, 445
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	42
BstKTI	GATC	2 cut(s)	79, 496
BstMBI	GATC	2 cut(s)	76, 493
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	625
BstUI	CGCG	1 cut(s)	42
BstV1I	GCAGC	3 cut(s)	419, 452, 493
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	3 cut(s)	177, 306, 490
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	2 cut(s)	44, 445
CciI	TCATGA	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	288, 423
CviAII	CATG	2 cut(s)	244, 584
CviJI	RGCY	9 cut(s)	46, 62, 177, 306, 313, 354, 410, 457, 490
CviKI_1	RGCY	9 cut(s)	46, 62, 177, 306, 313, 354, 410, 457, 490
CviQI	GTAC	2 cut(s)	288, 423
DpnI	GATC	2 cut(s)	78, 495
DpnII	GATC	2 cut(s)	76, 493
EaeI	YGGCCR	1 cut(s)	304
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	2 cut(s)	247, 587
FaiI	YATR	9 cut(s)	245, 298, 300, 309, 350, 501, 515, 552, 585
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FaqI	GGGAC	1 cut(s)	619
FatI	CATG	2 cut(s)	243, 583
Fnu4HI	GCNGC	5 cut(s)	6, 175, 408, 441, 507
FokI	GGATG	1 cut(s)	208
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	5 cut(s)	6, 175, 408, 441, 507
FspBI	CTAG	2 cut(s)	263, 411
GluI	GCNGC	5 cut(s)	6, 175, 408, 441, 507
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	3 cut(s)	177, 306, 490
HapII	CCGG	4 cut(s)	28, 102, 189, 491
Hin1I	GRCGYC	2 cut(s)	8, 24
Hin1II	CATG	2 cut(s)	247, 587
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	4 cut(s)	28, 102, 189, 491
HphI	GGTGA	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	464, 563, 576
Hpy188III	TCNNGA	4 cut(s)	28, 55, 80, 244
Hpy99I	CGWCG	3 cut(s)	13, 26, 147
HpyAV	CCTTC	3 cut(s)	186, 425, 511
HpyCH4III	ACNGT	2 cut(s)	147, 385
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	5 cut(s)	254, 270, 374, 407, 440
HpySE526I	ACGT	1 cut(s)	24
Hsp92I	GRCGYC	2 cut(s)	8, 24
Hsp92II	CATG	2 cut(s)	247, 587
Kpn2I	TCCGGA	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	76, 493
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	3 cut(s)	419, 452, 493
LweI	GCATC	1 cut(s)	530
MaeI	CTAG	2 cut(s)	263, 411
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	2 cut(s)	78, 495
MboI	GATC	2 cut(s)	76, 493
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	1 cut(s)	537
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	8 cut(s)	44, 62, 74, 104, 107, 128, 585, 604
Mox20I	TGGCCA	1 cut(s)	306
MroI	TCCGGA	1 cut(s)	27
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	3 cut(s)	132, 152, 275
Msp20I	TGGCCA	1 cut(s)	306
MspA1I	CMGCKG	2 cut(s)	174, 457
MspCI	CTTAAG	1 cut(s)	274
MspI	CCGG	4 cut(s)	28, 102, 189, 491
MspR9I	CCNGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	42
NciI	CCSGG	1 cut(s)	189
NdeII	GATC	2 cut(s)	76, 493
NlaIII	CATG	2 cut(s)	247, 587
NlaIV	GGNNCC	4 cut(s)	32, 214, 289, 495
PagI	TCATGA	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	224
PkrI	GCNGC	5 cut(s)	7, 176, 409, 442, 508
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PpuMI	RGGWCCY	1 cut(s)	212
Psp124BI	GAGCTC	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	212
PspN4I	GGNNCC	4 cut(s)	32, 214, 289, 495
PspPI	GGNCC	1 cut(s)	212
PspPPI	RGGWCCY	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	2 cut(s)	289, 424
RsaNI	GTAC	2 cut(s)	288, 423
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	132, 152, 275
SatI	GCNGC	5 cut(s)	6, 175, 408, 441, 507
Sau3AI	GATC	2 cut(s)	76, 493
Sau96I	GGNCC	1 cut(s)	212
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	1 cut(s)	530
SfcI	CTRYAG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	2 cut(s)	53, 274
SmoI	CTYRAG	2 cut(s)	53, 274
Sse9I	AATT	1 cut(s)	537
SsiI	CCGC	3 cut(s)	5, 40, 174
SspMI	CTAG	2 cut(s)	263, 411
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	147, 385
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	2 cut(s)	21, 120
TasI	AATT	1 cut(s)	537
TauI	GCSGC	2 cut(s)	8, 177
Tru1I	TTAA	3 cut(s)	132, 152, 275
Tru9I	TTAA	3 cut(s)	132, 152, 275
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	3 cut(s)	407, 440, 506
TspDTI	ATGAA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	76
Van91I	CCANNNNNTGG	1 cut(s)	224
Vha464I	CTTAAG	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	1 cut(s)	537
XspI	CTAG	2 cut(s)	263, 411
ZraI	GACGTC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.