Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

21390196 .. 21391973

Gene Structure 1778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG138700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGCTTGCACTTCTGAGGCAATTACGGCTATTAAGGAGCAAGAGAAGCAAATTAACGATTTTAGACAACATTAGTGGGATTATAAGACCTTCAAGATTGACGTTGTTATTGGGTCCACCGAGCTCCGGCAAGACGACGCTATTATTGGCTCTCGCCGGACGCCTTGGAACTGGTCTTCAGATCAAGCATTCAATGAAGAATTTGAATCAAGACCTTTCATTGCATAAACCCTTCATTCATTCATTGATGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006855 GO:0007275 GO:0008150 GO:0015399 GO:0015405 GO:0015893 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0032501 GO:0032502 GO:0042221 GO:0042335 GO:0042493 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

84

Amino Acids

9.3

Weight (kDa)

12.0

Isoelectric Point (pI)

59.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AcsI	RAATTY	1 cut(s)	199
AcuI	CTGAAG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	93, 192, 205
AluBI	AGCT	1 cut(s)	123
AluI	AGCT	1 cut(s)	123
Alw21I	GWGCWC	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	199
AspS9I	GGNCC	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	175
Bse3DI	GCAATG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	5
BseNI	ACTGG	1 cut(s)	175
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	126, 156
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	6
BspLI	GGNNCC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	163
BstACI	GRCGYC	1 cut(s)	160
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	14
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 45
BstV2I	GAAGAC	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	113
CseI	GACGC	2 cut(s)	145, 168
CspCI	CAANNNNNGTGG	2 cut(s)	55, 90
CviJI	RGCY	3 cut(s)	28, 123, 149
CviKI_1	RGCY	3 cut(s)	28, 123, 149
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	123
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	163
FaiI	YATR	3 cut(s)	83, 225, 253
FriOI	GRGCYC	1 cut(s)	125
HapII	CCGG	2 cut(s)	126, 156
HgaI	GACGC	2 cut(s)	145, 168
Hin1I	GRCGYC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	2 cut(s)	126, 156
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	15, 180
Hpy188III	TCNNGA	2 cut(s)	93, 209
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	99, 241
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	2 cut(s)	8, 223
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 45
HpyF3I	CTNAG	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	101
Hsp92I	GRCGYC	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	2 cut(s)	36, 128
LpnPI	CCDG	3 cut(s)	139, 156, 169
MaeII	ACGT	1 cut(s)	101
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	2 cut(s)	167, 208
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	3 cut(s)	20, 50, 199
MnlI	CCTC	1 cut(s)	9
MseI	TTAA	2 cut(s)	32, 53
MspI	CCGG	2 cut(s)	126, 156
Mva1269I	GAATGC	1 cut(s)	187
MwoI	GCNNNNNNNGC	2 cut(s)	25, 45
NdeII	GATC	1 cut(s)	180
NlaIV	GGNNCC	1 cut(s)	114
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	205
PsiI	TTATAA	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	32, 53
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	1 cut(s)	113
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	4 cut(s)	91, 104, 125, 216
SinI	GGWCC	1 cut(s)	113
Sse9I	AATT	3 cut(s)	20, 50, 199
SstI	GAGCTC	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	163
TaiI	ACGT	1 cut(s)	104
TasI	AATT	3 cut(s)	20, 50, 199
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	2 cut(s)	32, 53
Tru9I	TTAA	2 cut(s)	32, 53
TspDTI	ATGAA	5 cut(s)	207, 209, 223, 227, 231
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.