Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001009

Physical Location & Seq

Genomic Coordinates Forward (+)

3752610 .. 3754944

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCCTCCATTGATGCCGTCACCGCTAGTCGTGCCGCCTCCCTTGCGCTTGCAGAGGGAGGTAGTGCTCCCGATTTGGGGAGAATTGGTGGCGGCCCTATCAGTCCCTTAAAGGGAGGCAAACCCATAAGGATCCCAACACAAGTTTGTGGTGGAGATATGCTAGCTCATGCATATTCCACAATTAAGGTGTCACCTACTTTGGAGAATAGATTAAGTAAGGATAATGAGAAGCAAACTTGGAGTTATGAGAATGATGCGTCAAGAGAAGGTACCATTTATGGTAGAGAATTAGTTCAAGGGAATGTTGCTCGAGGTGAGCCGTGCAAACCATTAAAGATCGCTCCTATTAGGTTTGACAACTTTGATGGAGACTTGGATTGCATGCAAGCTGCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

133

Amino Acids

13.99

Weight (kDa)

5.8

Isoelectric Point (pI)

19.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001009)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g21872
rosa_chinensis	RchiOBHm_Chr2g0123681 RchiOBHm_Chr3g0479491 RchiOBHm_Chr3g0495041 RchiOBHm_Chr4g0441021 RchiOBHm_Chr5g0077811
rosa_laevigata	RLG00000002955 RLG00000006128 RLG00000014337 RLG00000017254 RLG00000017794 RLG00000018824 RLG00000020500 RLG00000021064 RLG00000022633 RLG00000023474 RLG00000034052 RLG00000034977 RLG00000035113
rosa_multiflora	Rmu_co7982184.1_g000001 Rmu_sc0001018.1_g000026 Rmu_sc0002302.1_g000019 Rmu_sc0004092.1_g000029 Rmu_sc0006432.1_g000003 Rmu_sc0014274.1_g000001 Rmu_sc0018911.1_g000009 Rmu_sc0028049.1_g000001
rosa_roxburghii	Rroxscaffold_1G00025310 Rroxscaffold_1G00070230 Rroxscaffold_2G00096810 Rroxscaffold_2G00096990 Rroxscaffold_3G00225320 Rroxscaffold_3G00247800 Rroxscaffold_3G00274690 Rroxscaffold_4G00297310 Rroxscaffold_4G00307210 Rroxscaffold_5G00336010 Rroxscaffold_5G00381920 Rroxscaffold_6G00398320
rosa_rugosa	Rorug02G0632200 Rorug07G0125300
rosa_samantha	Rh1AG414900 Rh1BG210400 Rh1CG235800 Rh2AG532500 Rh2BG232700 Rh2BG314600 Rh3AG318500 Rh3DG143100 Rh3DG252200 Rh4DG388600 Rh5AG088200 Rh5CG447300 Rh5DG116100 Rh6AG138700 Rh6BG076200 Rh6CG272500 Rh7AG212400 Rh7BG356600 Rh7BG449300 Rh7DG357700
rosa_wichuraiana	Rw6G042780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	272
AciI	CCGC	3 cut(s)	24, 36, 93
AclWI	GGATC	2 cut(s)	127, 140
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	3 cut(s)	77, 78, 113
AgsI	TTSAA	1 cut(s)	299
AluBI	AGCT	2 cut(s)	167, 392
AluI	AGCT	2 cut(s)	167, 392
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	2 cut(s)	127, 140
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	2 cut(s)	3, 94
ApeKI	GCWGC	2 cut(s)	392, 395
Asp700I	GAANNNNTTC	1 cut(s)	294
Asp718I	GGTACC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	49
AspS9I	GGNCC	1 cut(s)	95
AsuHPI	GGTGA	3 cut(s)	13, 186, 329
AsuNHI	GCTAGC	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	312
BamHI	GGATCC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	379, 382
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	2 cut(s)	2, 307
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	2 cut(s)	27, 164
BisI	GCNGC	4 cut(s)	36, 94, 393, 396
BlsI	GCNGC	4 cut(s)	37, 95, 394, 397
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	2 cut(s)	134, 274
BmsI	GCATC	2 cut(s)	4, 247
BmtI	GCTAGC	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 78, 113
BseLI	CCNNNNNNNGG	3 cut(s)	77, 78, 113
BseXI	GCAGC	2 cut(s)	379, 382
BshFI	GGCC	2 cut(s)	5, 96
BshNI	GGYRCC	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	3 cut(s)	77, 78, 113
BsmAI	GTCTC	1 cut(s)	366
BsmFI	GGGAC	1 cut(s)	90
BsnI	GGCC	2 cut(s)	5, 96
BsoBI	CYCGRG	1 cut(s)	312
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	2 cut(s)	132, 339
BspACI	CCGC	3 cut(s)	24, 36, 93
BspANI	GGCC	2 cut(s)	5, 96
BspLI	GGNNCC	2 cut(s)	134, 274
BspOI	GCTAGC	1 cut(s)	167
BspPI	GGATC	2 cut(s)	127, 140
BspT107I	GGYRCC	1 cut(s)	272
BssMI	GATC	2 cut(s)	132, 339
BstC8I	GCNNGC	4 cut(s)	51, 165, 386, 390
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	2 cut(s)	135, 342
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	2 cut(s)	132, 339
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 32, 44
BstNSI	RCATGY	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	379, 382
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	2 cut(s)	5, 96
Cac8I	GCNNGC	4 cut(s)	51, 165, 386, 390
CfoI	GCGC	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	95
CseI	GACGC	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	2 cut(s)	170, 385
CviJI	RGCY	5 cut(s)	5, 96, 167, 322, 392
CviKI_1	RGCY	5 cut(s)	5, 96, 167, 322, 392
CviQI	GTAC	1 cut(s)	273
DpnI	GATC	2 cut(s)	134, 341
DpnII	GATC	2 cut(s)	132, 339
Eco88I	CYCGRG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	175
FaeI	CATG	2 cut(s)	173, 388
FaiI	YATR	8 cut(s)	128, 161, 171, 175, 249, 282, 386, 400
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	2 cut(s)	169, 384
Fnu4HI	GCNGC	4 cut(s)	36, 94, 393, 396
Fsp4HI	GCNGC	4 cut(s)	36, 94, 393, 396
FspBI	CTAG	2 cut(s)	27, 164
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	4 cut(s)	36, 94, 393, 396
HaeIII	GGCC	2 cut(s)	5, 96
HgaI	GACGC	1 cut(s)	249
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	2 cut(s)	173, 388
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HphI	GGTGA	3 cut(s)	13, 186, 329
Hpy188III	TCNNGA	2 cut(s)	71, 264
HpyAV	CCTTC	1 cut(s)	263
HpyCH4V	TGCA	6 cut(s)	53, 173, 327, 384, 388, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 32, 44
Hsp92II	CATG	2 cut(s)	173, 388
HspAI	GCGC	1 cut(s)	47
KpnI	GGTACC	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	132, 339
LmnI	GCTCC	2 cut(s)	73, 349
Lsp1109I	GCAGC	2 cut(s)	379, 382
LweI	GCATC	2 cut(s)	4, 247
MaeI	CTAG	2 cut(s)	27, 164
MaeIII	GTNAC	2 cut(s)	19, 192
MalI	GATC	2 cut(s)	134, 341
MboI	GATC	2 cut(s)	132, 339
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	3 cut(s)	84, 183, 290
MnlI	CCTC	6 cut(s)	16, 49, 49, 53, 110, 308
Mph1103I	ATGCAT	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	294
MseI	TTAA	4 cut(s)	110, 186, 215, 335
MwoI	GCNNNNNNNGC	3 cut(s)	23, 32, 44
NdeII	GATC	2 cut(s)	132, 339
NheI	GCTAGC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	173, 388
NlaIV	GGNNCC	2 cut(s)	134, 274
NmuCI	GTSAC	2 cut(s)	19, 192
NsiI	ATGCAT	1 cut(s)	175
NspI	RCATGY	1 cut(s)	388
PaeI	GCATGC	1 cut(s)	388
PaeR7I	CTCGAG	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	37, 95, 394, 397
PspN4I	GGNNCC	2 cut(s)	134, 274
PspPI	GGNCC	1 cut(s)	95
PspXI	VCTCGAGB	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SaqAI	TTAA	4 cut(s)	110, 186, 215, 335
SatI	GCNGC	4 cut(s)	36, 94, 393, 396
Sau3AI	GATC	2 cut(s)	132, 339
Sau96I	GGNCC	1 cut(s)	95
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	8 cut(s)	64, 169, 192, 199, 274, 319, 356, 394
SfaNI	GCATC	2 cut(s)	4, 247
Sfr274I	CTCGAG	1 cut(s)	312
SlaI	CTCGAG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SphI	GCATGC	1 cut(s)	388
Sse9I	AATT	3 cut(s)	84, 183, 290
SsiI	CCGC	3 cut(s)	24, 36, 93
SspMI	CTAG	2 cut(s)	27, 164
TaqI	TCGA	1 cut(s)	313
TasI	AATT	3 cut(s)	84, 183, 290
TauI	GCSGC	2 cut(s)	38, 96
Tru1I	TTAA	4 cut(s)	110, 186, 215, 335
Tru9I	TTAA	4 cut(s)	110, 186, 215, 335
TseFI	GTSAC	2 cut(s)	19, 192
TseI	GCWGC	2 cut(s)	392, 395
Tsp45I	GTSAC	2 cut(s)	19, 192
XceI	RCATGY	1 cut(s)	388
XhoI	CTCGAG	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	2 cut(s)	27, 164
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.