Prupe.5G030900_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
3535145 .. 3539148
4004 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G030900.1

Sequence Viewer

Length: 336 bp
ATGAGTAGTTCATCACCAGCACATTCTTCAATATCAACAACAGCAATAGCTGGAGAAAGAGGAGAACGAAATGGCAGCAGCAATCCTGCTTTGTCTACGGACGACTTCCTCTTCCCCATTGATCTGATTTCTATTCAAGATCGCAAAGAAGAGGCAATGCTTGTTATAAAATCTGATCTGATGGACGCACTTAACAAGGTGGTTAAATCTCTTGATGAAGATAATTGGATCTTTGAAGGACCACGCCACCGTATCAACCCTATATCAAGAAAAGGCGGTTTTCTCCAGAAGCATATGGAAATTTCAAATAATTGGAATTTAGCCCCACCAAAATGA

Protein Analysis

112

Amino Acids

12.32

Weight (kDa)

5.87

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0016016)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32310
fragaria_vesca FvH4_5g22750
malus_domestica MD06G1038000.v1.1
prunus_persica Prupe.5G030900_v2.0.a1
pyrus_communis pycom06g03170
rosa_chinensis RchiOBHm_Chr7g0211351
rosa_laevigata RLG00000003007
rosa_multiflora Rmu_sc0001226.1_g000004
rosa_roxburghii Rroxscaffold_3G00247910
rosa_rugosa Rorug07G0125300
rosa_samantha Rh7AG257700 Rh7BG251800 Rh7CG274400 Rh7DG264100
rosa_wichuraiana Rw7G022020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 167
AccI GTMKAC 1 cut(s) 95
AciI CCGC 1 cut(s) 276
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 2 cut(s) 300, 316
AgsI TTSAA 4 cut(s) 30, 137, 236, 306
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
AlwI GGATC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 75, 78
ApoI RAATTY 2 cut(s) 300, 316
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 6
AvaII GGWCC 1 cut(s) 239
BbvI GCAGC 2 cut(s) 87, 90
BccI CCATC 1 cut(s) 175
BisI GCNGC 2 cut(s) 76, 79
BlsI GCNGC 2 cut(s) 77, 80
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BpmI CTGGAG 2 cut(s) 72, 269
Bse3DI GCAATG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 87, 90
Bsp143I GATC 4 cut(s) 121, 139, 175, 228
BspACI CCGC 1 cut(s) 276
BspPI GGATC 1 cut(s) 236
BsrDI GCAATG 1 cut(s) 162
BssMI GATC 4 cut(s) 121, 139, 175, 228
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 2 cut(s) 116, 144
BstKTI GATC 4 cut(s) 124, 142, 178, 231
BstMBI GATC 4 cut(s) 121, 139, 175, 228
BstV1I GCAGC 2 cut(s) 87, 90
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
Cfr13I GGNCC 1 cut(s) 239
CseI GACGC 1 cut(s) 194
CviJI RGCY 2 cut(s) 50, 323
CviKI_1 RGCY 2 cut(s) 50, 323
DpnI GATC 4 cut(s) 123, 141, 177, 230
DpnII GATC 4 cut(s) 121, 139, 175, 228
Eam1104I CTCTTC 2 cut(s) 116, 144
EarI CTCTTC 2 cut(s) 116, 144
Eco47I GGWCC 1 cut(s) 239
FaiI YATR 4 cut(s) 167, 263, 294, 296
FauNDI CATATG 1 cut(s) 294
FblI GTMKAC 1 cut(s) 95
Fnu4HI GCNGC 2 cut(s) 76, 79
Fsp4HI GCNGC 2 cut(s) 76, 79
GluI GCNGC 2 cut(s) 76, 79
GsuI CTGGAG 2 cut(s) 72, 269
HgaI GACGC 1 cut(s) 194
HphI GGTGA 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 3 cut(s) 126, 175, 180
Hpy188III TCNNGA 4 cut(s) 137, 212, 267, 286
Hpy8I GTNNAC 1 cut(s) 96
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 251
Kzo9I GATC 4 cut(s) 121, 139, 175, 228
LpnPI CCDG 4 cut(s) 30, 36, 99, 299
Lsp1109I GCAGC 2 cut(s) 87, 90
MalI GATC 4 cut(s) 123, 141, 177, 230
MboI GATC 4 cut(s) 121, 139, 175, 228
MboII GAAGA 4 cut(s) 18, 103, 161, 230
MflI RGATCY 1 cut(s) 228
MluCI AATT 4 cut(s) 223, 300, 310, 316
MnlI CCTC 3 cut(s) 53, 119, 145
MseI TTAA 2 cut(s) 192, 204
MslI CAYNNNNRTG 1 cut(s) 331
NdeI CATATG 1 cut(s) 294
NdeII GATC 4 cut(s) 121, 139, 175, 228
PkrI GCNGC 2 cut(s) 77, 80
PsiI TTATAA 1 cut(s) 167
PspPI GGNCC 1 cut(s) 239
PsuI RGATCY 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 331
SaqAI TTAA 2 cut(s) 192, 204
SatI GCNGC 2 cut(s) 76, 79
Sau3AI GATC 4 cut(s) 121, 139, 175, 228
Sau96I GGNCC 1 cut(s) 239
SetI ASST 2 cut(s) 52, 201
SinI GGWCC 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 331
Sse9I AATT 4 cut(s) 223, 300, 310, 316
SsiI CCGC 1 cut(s) 276
TaaI ACNGT 1 cut(s) 251
TasI AATT 4 cut(s) 223, 300, 310, 316
Tru1I TTAA 2 cut(s) 192, 204
Tru9I TTAA 2 cut(s) 192, 204
TseI GCWGC 2 cut(s) 75, 78
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 2 cut(s) 300, 316
XmiI GTMKAC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.