Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0016016

Physical Location & Seq

Genomic Coordinates Forward (+)

41258474 .. 41262590

Gene Structure 4117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAGTAGTTCGTCACCGGCACATTCTTCGATATCGACGACGGCGATTGCCGGAGAAAGAAATGGAGGCAGCAATGGGAGTGGTGCTGCTGCTTTGTCCACTGACGATTTCTACTTCCCATCTGATCTCATTTCGATTCAAGATCGAAAAGACGAGGCAATGCATGTTTTAAAGGCCAATCTCATGGTTGCACTTAATAAGGAGGTTAAATCTCTTGATGAAGATAACTGGATGTTTGAAGGGCCACGGTCCCGTATCAACTTGATATCTAGACAAGATGCGGGGGTTTTCTCCAGAAGCGGCTGGGAATTTCAAAGAACTGGAATTTGGCGGGACCAAGATGATTTTCAGCACCTCATGCAAGATGTTGTATTTCTTTGTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007049 GO:0007275 GO:0008150 GO:0009555 GO:0009556 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0010997 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0032501 GO:0032502 GO:0034293 GO:0040008 GO:0042176 GO:0043934 GO:0044703 GO:0044877 GO:0045732 GO:0045926 GO:0046620 GO:0046621 GO:0048229 GO:0048236 GO:0048518 GO:0048519 GO:0048638 GO:0048640 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0051093 GO:0051171 GO:0051173 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051321 GO:0051704 GO:0060255 GO:0065007 GO:0080090 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.23

Weight (kDa)

4.88

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32310
fragaria_vesca	FvH4_5g22750
malus_domestica	MD06G1038000.v1.1
prunus_persica	Prupe.5G030900_v2.0.a1
pyrus_communis	pycom06g03170
rosa_chinensis	RchiOBHm_Chr7g0211351
rosa_laevigata	RLG00000003007
rosa_multiflora	Rmu_sc0001226.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247910
rosa_rugosa	Rorug07G0125300
rosa_samantha	Rh7AG257700 Rh7BG251800 Rh7CG274400 Rh7DG264100
rosa_wichuraiana	Rw7G022020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	281, 300, 331
AcsI	RAATTY	2 cut(s)	308, 324
AgsI	TTSAA	3 cut(s)	140, 239, 314
AjuI	GAANNNNNNNTTGG	4 cut(s)	310, 330, 342, 362
AoxI	GGCC	2 cut(s)	174, 242
ApeKI	GCWGC	3 cut(s)	69, 86, 89
ApoI	RAATTY	2 cut(s)	308, 324
AspS9I	GGNCC	3 cut(s)	242, 249, 334
AsuHPI	GGTGA	1 cut(s)	6
AvaII	GGWCC	2 cut(s)	249, 334
BbvI	GCAGC	3 cut(s)	73, 76, 81
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BfaI	CTAG	1 cut(s)	270
BisI	GCNGC	4 cut(s)	70, 87, 90, 301
BlsI	GCNGC	4 cut(s)	71, 88, 91, 302
Bme18I	GGWCC	2 cut(s)	249, 334
BmgT120I	GGNCC	3 cut(s)	242, 249, 334
BmiI	GGNNCC	2 cut(s)	251, 335
BmsI	GCATC	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	233, 325
Bse3DI	GCAATG	2 cut(s)	79, 165
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	237
BseMI	GCAATG	2 cut(s)	79, 165
BseNI	ACTGG	2 cut(s)	233, 325
BseXI	GCAGC	3 cut(s)	73, 76, 81
BseYI	CCCAGC	1 cut(s)	303
BshFI	GGCC	2 cut(s)	176, 244
BsiSI	CCGG	2 cut(s)	17, 51
BslFI	GGGAC	2 cut(s)	235, 347
BsmFI	GGGAC	2 cut(s)	235, 347
BsnI	GGCC	2 cut(s)	176, 244
Bsp143I	GATC	2 cut(s)	124, 142
BspACI	CCGC	3 cut(s)	281, 300, 331
BspANI	GGCC	2 cut(s)	176, 244
BspLI	GGNNCC	2 cut(s)	251, 335
BsrDI	GCAATG	2 cut(s)	79, 165
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	233, 325
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	2 cut(s)	124, 142
Bst4CI	ACNGT	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	2 cut(s)	127, 145
BstMBI	GATC	2 cut(s)	124, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	167
BstV1I	GCAGC	3 cut(s)	73, 76, 81
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	176, 244
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	99
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	242, 249, 334
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	3 cut(s)	164, 184, 358
CviJI	RGCY	3 cut(s)	176, 244, 303
CviKI_1	RGCY	3 cut(s)	176, 244, 303
DpnI	GATC	2 cut(s)	126, 144
DpnII	GATC	2 cut(s)	124, 142
DraI	TTTAAA	1 cut(s)	171
Eco32I	GATATC	2 cut(s)	33, 267
Eco47I	GGWCC	2 cut(s)	249, 334
EcoRV	GATATC	2 cut(s)	33, 267
EcoT22I	ATGCAT	1 cut(s)	165
FaeI	CATG	3 cut(s)	167, 187, 361
FaiI	YATR	4 cut(s)	165, 185, 359, 385
FaqI	GGGAC	2 cut(s)	235, 347
FatI	CATG	3 cut(s)	163, 183, 357
FauI	CCCGC	2 cut(s)	274, 324
Fnu4HI	GCNGC	4 cut(s)	70, 87, 90, 301
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	4 cut(s)	70, 87, 90, 301
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	4 cut(s)	70, 87, 90, 301
GsaI	CCCAGC	1 cut(s)	307
GsuI	CTGGAG	1 cut(s)	277
HaeIII	GGCC	2 cut(s)	176, 244
HapII	CCGG	2 cut(s)	17, 51
Hin1II	CATG	3 cut(s)	167, 187, 361
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	2 cut(s)	17, 51
HphI	GGTGA	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	4 cut(s)	140, 215, 270, 294
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	2 cut(s)	40, 43
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	163, 191, 361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
Hsp92II	CATG	3 cut(s)	167, 187, 361
Kzo9I	GATC	2 cut(s)	124, 142
LpnPI	CCDG	6 cut(s)	30, 64, 214, 289, 306, 307
Lsp1109I	GCAGC	3 cut(s)	73, 76, 81
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	2 cut(s)	126, 144
MboI	GATC	2 cut(s)	124, 142
MboII	GAAGA	2 cut(s)	18, 233
MluCI	AATT	2 cut(s)	308, 324
MnlI	CCTC	4 cut(s)	59, 148, 196, 365
Mph1103I	ATGCAT	1 cut(s)	165
MseI	TTAA	3 cut(s)	170, 195, 207
MspI	CCGG	2 cut(s)	17, 51
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	2 cut(s)	124, 142
NlaIII	CATG	3 cut(s)	167, 187, 361
NlaIV	GGNNCC	2 cut(s)	251, 335
NmuCI	GTSAC	1 cut(s)	12
NsiI	ATGCAT	1 cut(s)	165
NspI	RCATGY	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	2 cut(s)	35, 41
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	4 cut(s)	71, 88, 91, 302
PspFI	CCCAGC	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	251, 335
PspPI	GGNCC	3 cut(s)	242, 249, 334
SaqAI	TTAA	3 cut(s)	170, 195, 207
SatI	GCNGC	4 cut(s)	70, 87, 90, 301
Sau3AI	GATC	2 cut(s)	124, 142
Sau96I	GGNCC	3 cut(s)	242, 249, 334
SetI	ASST	2 cut(s)	207, 357
SfaNI	GCATC	1 cut(s)	268
SinI	GGWCC	2 cut(s)	249, 334
Sse9I	AATT	2 cut(s)	308, 324
SsiI	CCGC	3 cut(s)	281, 300, 331
SspMI	CTAG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	249
TaqI	TCGA	4 cut(s)	29, 35, 134, 145
TasI	AATT	2 cut(s)	308, 324
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	3 cut(s)	170, 195, 207
Tru9I	TTAA	3 cut(s)	170, 195, 207
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	12
TseI	GCWGC	3 cut(s)	69, 86, 89
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	1 cut(s)	234
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	2 cut(s)	249, 334
XapI	RAATTY	2 cut(s)	308, 324
XbaI	TCTAGA	1 cut(s)	269
XceI	RCATGY	1 cut(s)	167
XspI	CTAG	1 cut(s)	270
Zsp2I	ATGCAT	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.