Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0017672

Physical Location & Seq

Genomic Coordinates Reverse (-)

15067800 .. 15070125

Gene Structure 2326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g23750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTTCTTCACGCCCGGAGGATCGGATGAATCCGAATTGGATACGTCAACGGATGATTGAGATGGAAATAGAGCGTGATCCACCTCTCAATCGAAGTTATCGCTGCTATTCTGGAACTTACTTGAAAGATTTTTACTTGAACGCAGACCAAGCTGCAAAACTTGAAGCCGGTGATAAAATCTTTATGCCACCCTCAGCTCTAGGAATCCTTTCACCTCTAAATCTGCCCATTATGCTCTTCCAGCTACGAAACCCTAAAGCTGCCGACAGAGAGCTGGTATCTCACTGTGGGGTTTTGGAGTTCATTGCGGAAGAAGACACGATCTATATGCCTTCCTGGAAGATGAGGAGCCTGCAATTGGAAGAGGGAGACGCTGTTCACGTCAAGATTGCCTTTCTTCCAAAGGGCAGGTTCGTTAAATTCCAACCCCATACCACGAGCTTTTTGGACATCACAAATCCGAGAGCTGTGTTGGAGAAAACACTGAGGACTTTTACATGTTTCACTACTGGGGATACTATCATGCTGCCGTATAATGGCAAGGAATACTATGTGGATATCGTAGAAACAAAGCCTCCCAGGGGCATAAGCATTGTTGACACAGACTGTGAGGTTGACTTTGTGGCTCCTCTCGACTATAAGGAACCCGAAAAGCCTGTTGCCGCGGCTTCTCCTCCAACAAACAAGGCGGCATTGGTGGCACCTGATCAGGTTGAAGAGCCTAAGTTCAGCCCTTTTACCGGAGCTGGAAGGCGTTTGGATGGAAAGCCTTTGCCCCCTCCCCCAATTTCTTCTTCCTCATTCGTTGCGGCAGCCAGTAATGGTAAGGGTGATGCGCAGCTGTCTTCTACAGGATCTAGCTCACAAGGAACCAGTGGTCGAGCTCATGGAAAGCTTGTTTTCGGAACAAATAATGCCGCTGCCAACCGTGCTACTAATAGTACTAATTCTCAGAAGGAAATAGAAAAGAAAGCTTCAAAAGAGCAGGCTAAGCCAGAAAAGAAAGAACCACCGAAGTTCCAGCCTTTTACAGGGAAAGGGTACTCATTAAAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

354

Amino Acids

38.92

Weight (kDa)

8.68

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	31 - 134	3.6e-24	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	136 - 211	6.2e-32	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0017672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23750 FvH4_5g23750
rosa_chinensis	RchiOBHm_Chr7g0213071
rosa_laevigata	RLG00000002833
rosa_multiflora	Rmu_co8462811.1_g000001 Rmu_sc0001121.1_g000007
rosa_roxburghii	Rroxscaffold_3G00246260
rosa_rugosa	Rorug07G0139300
rosa_samantha	Rh7AG270600 Rh7CG289900 Rh7DG278800
rosa_wichuraiana	Rw7G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	840
Acc36I	ACCTGC	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	703
AccII	CGCG	1 cut(s)	668
AciI	CCGC	6 cut(s)	311, 666, 668, 692, 812, 921
AclWI	GGATC	3 cut(s)	30, 74, 865
AcsI	RAATTY	1 cut(s)	422
AfaI	GTAC	2 cut(s)	946, 1046
AfiI	CCNNNNNNNGG	5 cut(s)	361, 539, 584, 743, 1034
AflIII	ACRYGT	1 cut(s)	500
AgsI	TTSAA	5 cut(s)	127, 142, 167, 719, 981
AjiI	CACGTC	1 cut(s)	385
AjnI	CCWGG	2 cut(s)	338, 581
AjuI	GAANNNNNNNTTGG	2 cut(s)	781, 813
AloI	GAACNNNNNNTCC	2 cut(s)	363, 395
Alw21I	GWGCWC	1 cut(s)	889
Alw26I	GTCTC	1 cut(s)	366
AlwI	GGATC	3 cut(s)	30, 74, 865
ApeKI	GCWGC	7 cut(s)	105, 155, 263, 529, 815, 841, 923
ApoI	RAATTY	1 cut(s)	422
Asp700I	GAANNNNTTC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	841
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	3 cut(s)	185, 207, 845
BanI	GGYRCC	1 cut(s)	703
BanII	GRGCYC	1 cut(s)	889
BauI	CACGAG	1 cut(s)	439
BbsI	GAAGAC	2 cut(s)	324, 840
Bbv12I	GWGCWC	1 cut(s)	889
BbvCI	CCTCAGC	1 cut(s)	196
BbvI	GCAGC	7 cut(s)	92, 142, 250, 516, 827, 853, 910
BccI	CCATC	2 cut(s)	58, 758
BceAI	ACGGC	1 cut(s)	517
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciT130I	CCWGG	2 cut(s)	340, 583
BciVI	GTATCC	2 cut(s)	36, 511
BclI	TGATCA	1 cut(s)	709
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	366
BfaI	CTAG	2 cut(s)	203, 861
BfmI	CTRYAG	1 cut(s)	852
BfuAI	ACCTGC	1 cut(s)	402
BfuI	GTATCC	2 cut(s)	36, 511
BlpI	GCTNAGC	1 cut(s)	993
BmcAI	AGTACT	1 cut(s)	946
Bme1390I	CCNGG	3 cut(s)	17, 340, 583
BmgBI	CACGTC	1 cut(s)	385
BmiI	GGNNCC	5 cut(s)	353, 630, 648, 705, 874
BmrFI	CCNGG	3 cut(s)	17, 340, 583
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	1 cut(s)	826
BmuI	ACTGGG	1 cut(s)	522
BpiI	GAAGAC	2 cut(s)	324, 840
Bpu10I	CCTNAGC	1 cut(s)	196
Bpu1102I	GCTNAGC	1 cut(s)	993
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	3 cut(s)	581, 582, 666
BsaWI	WCCGGW	1 cut(s)	743
BsaXI	ACNNNNNCTCC	4 cut(s)	363, 393, 562, 592
Bsc4I	CCNNNNNNNGG	5 cut(s)	361, 539, 584, 743, 1034
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	3 cut(s)	517, 819, 876
Bse3DI	GCAATG	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	340, 583
BseDI	CCNNGG	3 cut(s)	581, 582, 666
BseGI	GGATG	3 cut(s)	33, 60, 769
BseLI	CCNNNNNNNGG	5 cut(s)	361, 539, 584, 743, 1034
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	3 cut(s)	210, 479, 968
BseNI	ACTGG	3 cut(s)	517, 819, 876
BseRI	GAGGAG	3 cut(s)	364, 621, 666
BseXI	GCAGC	7 cut(s)	92, 142, 250, 516, 827, 853, 910
Bsh1236I	CGCG	1 cut(s)	668
BshNI	GGYRCC	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	889
BsiSI	CCGG	3 cut(s)	17, 171, 744
BslI	CCNNNNNNNGG	5 cut(s)	361, 539, 584, 743, 1034
BsmAI	GTCTC	1 cut(s)	366
BsmBI	CGTCTC	1 cut(s)	366
Bsp1286I	GDGCHC	1 cut(s)	889
Bsp143I	GATC	5 cut(s)	22, 79, 324, 709, 857
Bsp1720I	GCTNAGC	1 cut(s)	993
BspACI	CCGC	6 cut(s)	311, 666, 668, 692, 812, 921
BspCNI	CTCAG	3 cut(s)	209, 480, 967
BspFNI	CGCG	1 cut(s)	668
BspLI	GGNNCC	5 cut(s)	353, 630, 648, 705, 874
BspMI	ACCTGC	1 cut(s)	402
BspPI	GGATC	3 cut(s)	30, 74, 865
BspQI	GCTCTTC	2 cut(s)	245, 714
BspT107I	GGYRCC	1 cut(s)	703
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	3 cut(s)	517, 819, 876
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	3 cut(s)	581, 582, 666
BssMI	GATC	5 cut(s)	22, 79, 324, 709, 857
BssSI	CACGAG	1 cut(s)	439
Bst2BI	CACGAG	1 cut(s)	439
Bst2UI	CCWGG	2 cut(s)	340, 583
Bst4CI	ACNGT	3 cut(s)	290, 611, 932
Bst6I	CTCTTC	3 cut(s)	245, 360, 714
BstC8I	GCNNGC	2 cut(s)	356, 990
BstDEI	CTNAG	5 cut(s)	196, 488, 726, 954, 993
BstDSI	CCRYGG	1 cut(s)	666
BstENI	CCTNNNNNAGG	1 cut(s)	1032
BstF5I	GGATG	3 cut(s)	33, 60, 769
BstFNI	CGCG	1 cut(s)	668
BstHHI	GCGC	1 cut(s)	841
BstKTI	GATC	5 cut(s)	25, 82, 327, 712, 860
BstMAI	GTCTC	1 cut(s)	366
BstMBI	GATC	5 cut(s)	22, 79, 324, 709, 857
BstMWI	GCNNNNNNNGC	6 cut(s)	152, 235, 244, 701, 932, 994
BstNI	CCWGG	2 cut(s)	340, 583
BstNSI	RCATGY	1 cut(s)	504
BstSCI	CCNGG	3 cut(s)	15, 338, 581
BstSFI	CTRYAG	1 cut(s)	852
BstUI	CGCG	1 cut(s)	668
BstV1I	GCAGC	7 cut(s)	92, 142, 250, 516, 827, 853, 910
BstV2I	GAAGAC	2 cut(s)	324, 840
BstX2I	RGATCY	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	857
BsuI	GTATCC	2 cut(s)	36, 511
BtgI	CCRYGG	1 cut(s)	666
BtrI	CACGTC	1 cut(s)	385
BtsCI	GGATG	3 cut(s)	33, 60, 769
BtsIMutI	CAGTG	3 cut(s)	286, 485, 883
BveI	ACCTGC	1 cut(s)	402
Cac8I	GCNNGC	2 cut(s)	356, 990
CfoI	GCGC	1 cut(s)	841
Cfr10I	RCCGGY	1 cut(s)	170
Cfr42I	CCGCGG	1 cut(s)	669
CseI	GACGC	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	945, 1045
CviAII	CATG	3 cut(s)	501, 526, 890
CviQI	GTAC	2 cut(s)	945, 1045
DdeI	CTNAG	5 cut(s)	196, 488, 726, 954, 993
DpnI	GATC	5 cut(s)	24, 81, 326, 711, 859
DpnII	GATC	5 cut(s)	22, 79, 324, 709, 857
Eam1104I	CTCTTC	3 cut(s)	245, 360, 714
EarI	CTCTTC	3 cut(s)	245, 360, 714
Ecl136II	GAGCTC	1 cut(s)	887
Eco24I	GRGCYC	1 cut(s)	889
Eco32I	GATATC	1 cut(s)	562
Eco53kI	GAGCTC	1 cut(s)	887
EcoICRI	GAGCTC	1 cut(s)	887
EcoNI	CCTNNNNNAGG	1 cut(s)	1032
EcoRII	CCWGG	2 cut(s)	338, 581
EcoRV	GATATC	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	889
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	3 cut(s)	504, 529, 893
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FatI	CATG	3 cut(s)	500, 525, 889
FbaI	TGATCA	1 cut(s)	709
FokI	GGATG	3 cut(s)	40, 67, 776
FriOI	GRGCYC	1 cut(s)	889
FspBI	CTAG	2 cut(s)	203, 861
FspI	TGCGCA	1 cut(s)	840
GlaI	GCGC	1 cut(s)	840
HapII	CCGG	3 cut(s)	17, 171, 744
HgaI	GACGC	1 cut(s)	383
HhaI	GCGC	1 cut(s)	841
Hin1II	CATG	3 cut(s)	504, 529, 893
Hin6I	GCGC	1 cut(s)	839
HinP1I	GCGC	1 cut(s)	839
HincII	GTYRAC	3 cut(s)	50, 601, 619
HindII	GTYRAC	3 cut(s)	50, 601, 619
HindIII	AAGCTT	2 cut(s)	896, 975
HinfI	GANTC	2 cut(s)	31, 207
HpaII	CCGG	3 cut(s)	17, 171, 744
HphI	GGTGA	3 cut(s)	185, 207, 845
Hpy166II	GTNNAC	4 cut(s)	50, 382, 601, 619
Hpy188I	TCNGA	5 cut(s)	27, 36, 465, 908, 957
Hpy188III	TCNNGA	3 cut(s)	114, 388, 635
Hpy8I	GTNNAC	4 cut(s)	50, 382, 601, 619
HpyAV	CCTTC	3 cut(s)	345, 747, 952
HpyCH4III	ACNGT	3 cut(s)	290, 611, 932
HpyCH4IV	ACGT	2 cut(s)	46, 384
HpyCH4V	TGCA	2 cut(s)	158, 358
HpyF10VI	GCNNNNNNNGC	6 cut(s)	152, 235, 244, 701, 932, 994
HpyF3I	CTNAG	5 cut(s)	196, 488, 726, 954, 993
HpySE526I	ACGT	2 cut(s)	46, 384
Hsp92II	CATG	3 cut(s)	504, 529, 893
HspAI	GCGC	1 cut(s)	839
Ksp22I	TGATCA	1 cut(s)	709
KspI	CCGCGG	1 cut(s)	669
Kzo9I	GATC	5 cut(s)	22, 79, 324, 709, 857
LguI	GCTCTTC	2 cut(s)	245, 714
LmnI	GCTCC	3 cut(s)	351, 634, 746
Lsp1109I	GCAGC	7 cut(s)	92, 142, 250, 516, 827, 853, 910
LweI	GCATC	1 cut(s)	826
MaeI	CTAG	2 cut(s)	203, 861
MaeII	ACGT	2 cut(s)	46, 384
MalI	GATC	5 cut(s)	24, 81, 326, 711, 859
MboI	GATC	5 cut(s)	22, 79, 324, 709, 857
MfeI	CAATTG	1 cut(s)	359
MflI	RGATCY	1 cut(s)	857
MhlI	GDGCHC	1 cut(s)	889
MluCI	AATT	5 cut(s)	37, 359, 422, 789, 949
MmeI	TCCRAC	3 cut(s)	451, 456, 704
MroXI	GAANNNNTTC	1 cut(s)	211
MseI	TTAA	3 cut(s)	420, 1052, 1060
MspA1I	CMGCKG	3 cut(s)	668, 844, 923
MspI	CCGG	3 cut(s)	17, 171, 744
MspR9I	CCNGG	3 cut(s)	17, 340, 583
MunI	CAATTG	1 cut(s)	359
MvaI	CCWGG	2 cut(s)	340, 583
MvnI	CGCG	1 cut(s)	668
MwoI	GCNNNNNNNGC	6 cut(s)	152, 235, 244, 701, 932, 994
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	5 cut(s)	22, 79, 324, 709, 857
NlaIII	CATG	3 cut(s)	504, 529, 893
NlaIV	GGNNCC	5 cut(s)	353, 630, 648, 705, 874
NsbI	TGCGCA	1 cut(s)	840
NspI	RCATGY	1 cut(s)	504
PasI	CCCWGGG	1 cut(s)	582
PciI	ACATGT	1 cut(s)	500
PciSI	GCTCTTC	2 cut(s)	245, 714
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	31, 207
PfoI	TCCNGGA	1 cut(s)	338
PscI	ACATGT	1 cut(s)	500
Psp124BI	GAGCTC	1 cut(s)	889
Psp6I	CCWGG	2 cut(s)	338, 581
PspGI	CCWGG	2 cut(s)	338, 581
PspN4I	GGNNCC	5 cut(s)	353, 630, 648, 705, 874
PsuI	RGATCY	1 cut(s)	857
PvuII	CAGCTG	1 cut(s)	844
RsaI	GTAC	2 cut(s)	946, 1046
RsaNI	GTAC	2 cut(s)	945, 1045
SacI	GAGCTC	1 cut(s)	889
SacII	CCGCGG	1 cut(s)	669
SapI	GCTCTTC	2 cut(s)	245, 714
SaqAI	TTAA	3 cut(s)	420, 1052, 1060
Sau3AI	GATC	5 cut(s)	22, 79, 324, 709, 857
ScaI	AGTACT	1 cut(s)	946
ScrFI	CCNGG	3 cut(s)	17, 340, 583
SduI	GDGCHC	1 cut(s)	889
SfaNI	GCATC	1 cut(s)	826
SfcI	CTRYAG	1 cut(s)	852
Sfr303I	CCGCGG	1 cut(s)	669
SgrBI	CCGCGG	1 cut(s)	669
Sse9I	AATT	5 cut(s)	37, 359, 422, 789, 949
SsiI	CCGC	6 cut(s)	311, 666, 668, 692, 812, 921
SspMI	CTAG	2 cut(s)	203, 861
SstI	GAGCTC	1 cut(s)	889
StyD4I	CCNGG	3 cut(s)	15, 338, 581
TaaI	ACNGT	3 cut(s)	290, 611, 932
TaiI	ACGT	2 cut(s)	49, 387
TaqI	TCGA	3 cut(s)	94, 636, 883
TasI	AATT	5 cut(s)	37, 359, 422, 789, 949
TatI	WGTACW	1 cut(s)	944
TauI	GCSGC	5 cut(s)	668, 671, 695, 815, 923
TfiI	GAWTC	2 cut(s)	31, 207
Tru1I	TTAA	3 cut(s)	420, 1052, 1060
Tru9I	TTAA	3 cut(s)	420, 1052, 1060
TscAI	CASTG	3 cut(s)	293, 492, 883
TseI	GCWGC	7 cut(s)	105, 155, 263, 529, 815, 841, 923
TspDTI	ATGAA	2 cut(s)	44, 295
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	3 cut(s)	293, 492, 883
XagI	CCTNNNNNAGG	1 cut(s)	1032
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	504
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	2 cut(s)	203, 861
ZrmI	AGTACT	1 cut(s)	946

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.