Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0017672

Physical Location & Seq

Genomic Coordinates Forward (+)

10974948 .. 10975811

Gene Structure 864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0139300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCGGAAGCTTTCGTTCCGGTGTACTCCACTCCATTTCTTCCACCATATGTATCTCAGTGGGAAAATATTAACTTTGGTTTTCGGTTGGCGTGGGCTGAGCCTGATTGTGGTTACTGTGAACTAACTCATAGAGCTTGTCGGTTTGAGAATGCTACAAGTTGGCAGATTGGTTGCTCTGGTCGAAGAGGTCTCTCAAATGCTGCAAGAACTGGCTTAATTATAGGCCTGGGAATCCCGGGGCTTGTGGGCATTTCTGGGCTTGCAATGCTTATAACGGACAGGATGAGGACCCGTCGTCAGGGCAACCACACAACCATGGAACTATCCACGGTAACTAATGAACAATCTCCAGTAGTCACAGCAGTGGCCGGCCTTGATGCTGCGACCATCGAATCGTATCCTAAGACTCAACTTGGTGAGAGCGTGGATTTACCTAGCCCAAATGATAAAACTTGCTCTATATGTTTGGCCGAGTACCAGCCCAAGGAATCTCTCAGGGGTATACCTGTATGCAACCATTATTTTCATGCTATATGTATAGATGAATGGCTAAGAAATAATTCGACTTGTCCGCTTTGTCGGAATCCACCTGATCGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

201

Amino Acids

22.21

Weight (kDa)

6.08

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	151 - 195	5.6e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	152 - 195	7e-14	Ring finger domain
zf-RING_11	PF17123	153 - 181	2.8e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	153 - 194	1.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	153 - 194	5e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23750 FvH4_5g23750
rosa_chinensis	RchiOBHm_Chr7g0213071
rosa_laevigata	RLG00000002833
rosa_multiflora	Rmu_co8462811.1_g000001 Rmu_sc0001121.1_g000007
rosa_roxburghii	Rroxscaffold_3G00246260
rosa_rugosa	Rorug07G0139300
rosa_samantha	Rh7AG270600 Rh7CG289900 Rh7DG278800
rosa_wichuraiana	Rw7G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
AccI	GTMKAC	1 cut(s)	505
AciI	CCGC	1 cut(s)	575
AcoI	YGGCCR	2 cut(s)	369, 471
AfaI	GTAC	2 cut(s)	26, 479
AfiI	CCNNNNNNNGG	3 cut(s)	110, 301, 487
AhdI	GACNNNNNGTC	1 cut(s)	297
AjnI	CCWGG	1 cut(s)	228
AleI	CACNNNNGTG	1 cut(s)	365
AluBI	AGCT	2 cut(s)	11, 137
AluI	AGCT	2 cut(s)	11, 137
Alw26I	GTCTC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	4 cut(s)	226, 369, 373, 471
ApeKI	GCWGC	2 cut(s)	203, 383
Asp700I	GAANNNNTTC	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	291
AsuC2I	CCSGG	2 cut(s)	239, 240
AsuHPI	GGTGA	1 cut(s)	431
AvaI	CYCGRG	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	190, 370
BccI	CCATC	1 cut(s)	398
BciT130I	CCWGG	1 cut(s)	230
BciVI	GTATCC	1 cut(s)	411
BcnI	CCSGG	2 cut(s)	239, 240
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	411
BisI	GCNGC	2 cut(s)	204, 384
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	2 cut(s)	205, 385
Bme1390I	CCNGG	3 cut(s)	230, 239, 240
Bme18I	GGWCC	1 cut(s)	291
BmeRI	GACNNNNNGTC	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	3 cut(s)	230, 239, 240
BmsI	GCATC	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	336
Bpu1102I	GCTNAGC	1 cut(s)	99
BpuMI	CCSGG	2 cut(s)	239, 240
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	6 cut(s)	229, 238, 239, 318, 330, 486
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 301, 487
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	2 cut(s)	217, 353
Bse3DI	GCAATG	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	6 cut(s)	229, 238, 239, 318, 330, 486
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	3 cut(s)	110, 301, 487
BseMI	GCAATG	1 cut(s)	273
BseMII	CTCAG	3 cut(s)	71, 90, 511
BseNI	ACTGG	2 cut(s)	217, 353
BseXI	GCAGC	2 cut(s)	190, 370
BshFI	GGCC	4 cut(s)	228, 371, 375, 473
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	3 cut(s)	20, 239, 372
BslI	CCNNNNNNNGG	3 cut(s)	110, 301, 487
BsmAI	GTCTC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	4 cut(s)	228, 371, 375, 473
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	595
Bsp1720I	GCTNAGC	1 cut(s)	99
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	1 cut(s)	575
BspANI	GGCC	4 cut(s)	228, 371, 375, 473
BspCNI	CTCAG	3 cut(s)	70, 91, 510
BspLI	GGNNCC	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	217, 353
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	6 cut(s)	229, 238, 239, 318, 330, 486
BssMI	GATC	1 cut(s)	595
BssNAI	GTATAC	1 cut(s)	506
BssT1I	CCWWGG	2 cut(s)	318, 486
Bst1107I	GTATAC	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	3 cut(s)	119, 334, 603
Bst6I	CTCTTC	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	264, 373
BstDEI	CTNAG	5 cut(s)	57, 99, 405, 497, 554
BstDSI	CCRYGG	2 cut(s)	318, 330
BstF5I	GGATG	1 cut(s)	291
BstKTI	GATC	1 cut(s)	598
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	595
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	3 cut(s)	228, 237, 238
BstV1I	GCAGC	2 cut(s)	190, 370
BstZ17I	GTATAC	1 cut(s)	506
BsuI	GTATCC	1 cut(s)	411
BsuRI	GGCC	4 cut(s)	228, 371, 375, 473
BtgI	CCRYGG	2 cut(s)	318, 330
BtsCI	GGATG	1 cut(s)	291
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	2 cut(s)	65, 372
Cac8I	GCNNGC	2 cut(s)	264, 373
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	291
Cfr9I	CCCGGG	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	25, 478
CviAII	CATG	2 cut(s)	319, 530
CviQI	GTAC	2 cut(s)	25, 478
DdeI	CTNAG	5 cut(s)	57, 99, 405, 497, 554
DpnI	GATC	1 cut(s)	597
DpnII	GATC	1 cut(s)	595
DriI	GACNNNNNGTC	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	369, 471
Eam1104I	CTCTTC	1 cut(s)	181
Eam1105I	GACNNNNNGTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	181
Eco130I	CCWWGG	2 cut(s)	318, 486
Eco147I	AGGCCT	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	318, 486
ErhI	CCWWGG	2 cut(s)	318, 486
FaeI	CATG	2 cut(s)	322, 533
FatI	CATG	2 cut(s)	318, 529
FauNDI	CATATG	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	505
Fnu4HI	GCNGC	2 cut(s)	204, 384
FokI	GGATG	1 cut(s)	298
FseI	GGCCGGCC	1 cut(s)	375
Fsp4HI	GCNGC	2 cut(s)	204, 384
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	2 cut(s)	204, 384
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	4 cut(s)	228, 371, 375, 473
HapII	CCGG	3 cut(s)	20, 239, 372
Hin1II	CATG	2 cut(s)	322, 533
HindIII	AAGCTT	1 cut(s)	9
HinfI	GANTC	5 cut(s)	234, 395, 409, 491, 586
HpaII	CCGG	3 cut(s)	20, 239, 372
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	3 cut(s)	25, 122, 506
Hpy188I	TCNGA	2 cut(s)	7, 585
Hpy8I	GTNNAC	3 cut(s)	25, 122, 506
Hpy99I	CGWCG	1 cut(s)	300
HpyCH4III	ACNGT	3 cut(s)	119, 334, 603
HpyCH4V	TGCA	3 cut(s)	206, 266, 516
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	5 cut(s)	57, 99, 405, 497, 554
Hsp92II	CATG	2 cut(s)	322, 533
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
Kzo9I	GATC	1 cut(s)	595
Lsp1109I	GCAGC	2 cut(s)	190, 370
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	3 cut(s)	113, 334, 358
MalI	GATC	1 cut(s)	597
MboI	GATC	1 cut(s)	595
MboII	GAAGA	2 cut(s)	32, 198
MluCI	AATT	2 cut(s)	219, 562
MlyI	GAGTC	1 cut(s)	403
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	2 cut(s)	182, 282
MroNI	GCCGGC	1 cut(s)	371
MroXI	GAANNNNTTC	1 cut(s)	562
MseI	TTAA	2 cut(s)	72, 218
MslI	CAYNNNNRTG	2 cut(s)	317, 365
MspI	CCGG	3 cut(s)	20, 239, 372
MspR9I	CCNGG	3 cut(s)	230, 239, 240
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	268
NaeI	GCCGGC	1 cut(s)	373
NciI	CCSGG	2 cut(s)	239, 240
NcoI	CCATGG	1 cut(s)	318
NdeI	CATATG	1 cut(s)	49
NdeII	GATC	1 cut(s)	595
NgoMIV	GCCGGC	1 cut(s)	371
NlaIII	CATG	2 cut(s)	322, 533
NlaIV	GGNNCC	1 cut(s)	293
NmeAIII	GCCGAG	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	358
OliI	CACNNNNGTG	1 cut(s)	365
PceI	AGGCCT	1 cut(s)	228
PctI	GAATGC	1 cut(s)	157
PdiI	GCCGGC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	562
PfeI	GAWTC	4 cut(s)	234, 395, 491, 586
PkrI	GCNGC	2 cut(s)	205, 385
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
PpuMI	RGGWCCY	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	1 cut(s)	291
PspPPI	RGGWCCY	1 cut(s)	291
RigI	GGCCGGCC	1 cut(s)	375
RsaI	GTAC	2 cut(s)	26, 479
RsaNI	GTAC	2 cut(s)	25, 478
RseI	CAYNNNNRTG	2 cut(s)	317, 365
SaqAI	TTAA	2 cut(s)	72, 218
SatI	GCNGC	2 cut(s)	204, 384
Sau3AI	GATC	1 cut(s)	595
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	403
ScrFI	CCNGG	3 cut(s)	230, 239, 240
SetI	ASST	6 cut(s)	13, 139, 193, 439, 511, 595
SfaNI	GCATC	1 cut(s)	370
SinI	GGWCC	1 cut(s)	291
SmaI	CCCGGG	1 cut(s)	240
SmiMI	CAYNNNNRTG	2 cut(s)	317, 365
Sse9I	AATT	2 cut(s)	219, 562
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	1 cut(s)	575
SspI	AATATT	1 cut(s)	70
SspMI	CTAG	1 cut(s)	438
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	3 cut(s)	228, 237, 238
StyI	CCWWGG	2 cut(s)	318, 486
TaaI	ACNGT	3 cut(s)	119, 334, 603
TaqI	TCGA	4 cut(s)	184, 393, 566, 598
TasI	AATT	2 cut(s)	219, 562
TatI	WGTACW	1 cut(s)	24
TfiI	GAWTC	4 cut(s)	234, 395, 491, 586
Tru1I	TTAA	2 cut(s)	72, 218
Tru9I	TTAA	2 cut(s)	72, 218
TscAI	CASTG	2 cut(s)	65, 372
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	2 cut(s)	203, 383
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	3 cut(s)	357, 518, 561
TspGWI	ACGGA	1 cut(s)	293
TspMI	CCCGGG	1 cut(s)	238
TspRI	CASTG	2 cut(s)	65, 372
VpaK11BI	GGWCC	1 cut(s)	291
XmaI	CCCGGG	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	505
XmnI	GAANNNNTTC	1 cut(s)	562
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.