Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8462811.1

Orthogroup ID

OG0017672

Physical Location & Seq

Genomic Coordinates Reverse (-)

61 .. 1041

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8462811.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atgatggagattgatatggagcgtcggccgtctctcgatcaaagctatcgctgctacactgcaactttcttggacaaaaaccaagctgcaaaactcgaaaccggtgacaaaatctttatgccaccctcagccctcagtgtccttttgtctcggcccagcagtaacccgatgctcttcgagctacgaaacccgaatgctgccgagagagagttggtttcacactgtggggttttggagttcactgcattagaagacaccatttatatgccttcctggaagatgaagagcctggacttggaagagggagaccttgttcaagtcaagaatgtgactcttccaaaaggcaaattctttaaattgcaaccccacaccaaaaacttcttggacattgcaaatccgagagctgtgttggagacaacactgaggagttttacatgtttcacgactggtgatactattaagctgccttataatggcaaggaatactatgtggatatcgtagaaacaaagcctggtaaggccataagtatcgttgacacagactgtgaggttgactttgcgcctcctcgcgactataaggaacccgagatgcctgttgctgcagctactcctccgacaaacaaggcggcattggtggcagctgatcagattgaagaacctaaattcaacccttttaccggagctggaaggcgtttggatggaaaacctttgtccgctgccccagtttcttcttcctcattagttgcagcagccaataatggtaagggaaatgcacagccatcgaatacaggatccagctcacaagggaacagtcgtcgggctcaggggaagcttgttttcggatcaaatgctgccaaccgtactactactcctccaaaggaaacagaaaaggaagcttcaaaagagcaggctaagccagaaaagaaagaagatccaaagttccagccctttacagggaaaaggtactcattaaagggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

326

Amino Acids

35.82

Weight (kDa)

8.49

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23750 FvH4_5g23750
rosa_chinensis	RchiOBHm_Chr7g0213071
rosa_laevigata	RLG00000002833
rosa_multiflora	Rmu_co8462811.1_g000001 Rmu_sc0001121.1_g000007
rosa_roxburghii	Rroxscaffold_3G00246260
rosa_rugosa	Rorug07G0139300
rosa_samantha	Rh7AG270600 Rh7CG289900 Rh7DG278800
rosa_wichuraiana	Rw7G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AccII	CGCG	1 cut(s)	570
AciI	CCGC	2 cut(s)	626, 714
AclWI	GGATC	4 cut(s)	786, 799, 850, 926
AcoI	YGGCCR	1 cut(s)	26
AcsI	RAATTY	2 cut(s)	347, 662
AdeI	CACNNNGTG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	862, 965
AfiI	CCNNNNNNNGG	5 cut(s)	295, 473, 677, 953, 954
AflIII	ACRYGT	1 cut(s)	434
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	317, 653, 667, 900
AjnI	CCWGG	3 cut(s)	272, 288, 511
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
Alw26I	GTCTC	4 cut(s)	36, 153, 300, 407
AlwI	GGATC	4 cut(s)	786, 799, 850, 926
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	3 cut(s)	26, 152, 519
ApoI	RAATTY	2 cut(s)	347, 662
AsiGI	ACCGGT	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	116, 461
AvaI	CYCGRG	1 cut(s)	584
BamHI	GGATCC	1 cut(s)	791
BanII	GRGCYC	1 cut(s)	823
BbsI	GAAGAC	1 cut(s)	258
BbvCI	CCTCAGC	1 cut(s)	127
BccI	CCATC	2 cut(s)	692, 787
BceAI	ACGGC	1 cut(s)	13
BcgI	CGANNNNNNTGC	2 cut(s)	762, 796
BciT130I	CCWGG	3 cut(s)	274, 290, 513
BclI	TGATCA	1 cut(s)	643
BcoDI	GTCTC	4 cut(s)	36, 153, 300, 407
BfmI	CTRYAG	1 cut(s)	600
BlpI	GCTNAGC	1 cut(s)	912
Bme1390I	CCNGG	3 cut(s)	274, 290, 513
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	582, 793
BmrFI	CCNGG	3 cut(s)	274, 290, 513
BmrI	ACTGGG	1 cut(s)	716
BmsI	GCATC	2 cut(s)	159, 579
BmuI	ACTGGG	1 cut(s)	716
BpiI	GAAGAC	1 cut(s)	258
Bpu10I	CCTNAGC	2 cut(s)	127, 822
Bpu1102I	GCTNAGC	1 cut(s)	912
BsaI	GGTCTC	1 cut(s)	300
BsaWI	WCCGGW	2 cut(s)	101, 677
BsaXI	ACNNNNNCTCC	6 cut(s)	297, 327, 853, 856, 883, 886
Bsc4I	CCNNNNNNNGG	5 cut(s)	295, 473, 677, 953, 954
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	451, 722
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	3 cut(s)	274, 290, 513
BseGI	GGATG	1 cut(s)	703
BseLI	CCNNNNNNNGG	5 cut(s)	295, 473, 677, 953, 954
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	4 cut(s)	141, 148, 413, 836
BseNI	ACTGG	2 cut(s)	451, 722
BseRI	GAGGAG	4 cut(s)	439, 555, 600, 861
BseX3I	CGGCCG	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	570
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	3 cut(s)	28, 154, 521
BshTI	ACCGGT	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	2 cut(s)	102, 678
BslI	CCNNNNNNNGG	5 cut(s)	295, 473, 677, 953, 954
BsmAI	GTCTC	4 cut(s)	36, 153, 300, 407
BsmBI	CGTCTC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	28, 154, 521
Bso31I	GGTCTC	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	823
Bsp143I	GATC	5 cut(s)	37, 643, 791, 842, 931
Bsp1720I	GCTNAGC	1 cut(s)	912
Bsp68I	TCGCGA	1 cut(s)	570
BspACI	CCGC	2 cut(s)	626, 714
BspANI	GGCC	3 cut(s)	28, 154, 521
BspCNI	CTCAG	4 cut(s)	140, 147, 414, 835
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	582, 793
BspMAI	CTGCAG	1 cut(s)	604
BspPI	GGATC	4 cut(s)	786, 799, 850, 926
BspQI	GCTCTTC	2 cut(s)	179, 278
BspTNI	GGTCTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	451, 722
BssAI	RCCGGY	1 cut(s)	101
BssMI	GATC	5 cut(s)	37, 643, 791, 842, 931
Bst2UI	CCWGG	3 cut(s)	274, 290, 513
Bst4CI	ACNGT	4 cut(s)	224, 545, 812, 860
Bst6I	CTCTTC	4 cut(s)	179, 278, 294, 339
BstC8I	GCNNGC	1 cut(s)	909
BstDEI	CTNAG	5 cut(s)	127, 134, 422, 822, 912
BstF5I	GGATG	1 cut(s)	703
BstFNI	CGCG	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	5 cut(s)	40, 646, 794, 845, 934
BstMAI	GTCTC	4 cut(s)	36, 153, 300, 407
BstMBI	GATC	5 cut(s)	37, 643, 791, 842, 931
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 178, 635, 913
BstNI	CCWGG	3 cut(s)	274, 290, 513
BstNSI	RCATGY	1 cut(s)	438
BstSCI	CCNGG	3 cut(s)	272, 288, 511
BstSFI	CTRYAG	1 cut(s)	600
BstUI	CGCG	1 cut(s)	570
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	2 cut(s)	791, 931
BstYI	RGATCY	2 cut(s)	791, 931
BstZI	CGGCCG	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	28, 154, 521
BtsCI	GGATG	1 cut(s)	703
BtsI	GCAGTG	2 cut(s)	57, 240
BtsIMutI	CAGTG	5 cut(s)	57, 142, 220, 240, 419
BtuMI	TCGCGA	1 cut(s)	570
Cac8I	GCNNGC	1 cut(s)	909
CfoI	GCGC	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	153
CseI	GACGC	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	861, 964
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	1 cut(s)	435
CviQI	GTAC	2 cut(s)	861, 964
DdeI	CTNAG	5 cut(s)	127, 134, 422, 822, 912
DpnI	GATC	5 cut(s)	39, 645, 793, 844, 933
DpnII	GATC	5 cut(s)	37, 643, 791, 842, 931
DraI	TTTAAA	1 cut(s)	355
DraIII	CACNNNGTG	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	26
EagI	CGGCCG	1 cut(s)	26
Eam1104I	CTCTTC	4 cut(s)	179, 278, 294, 339
EarI	CTCTTC	4 cut(s)	179, 278, 294, 339
EclXI	CGGCCG	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	823
Eco31I	GGTCTC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	496
Eco52I	CGGCCG	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	272, 288, 511
EcoRV	GATATC	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	823
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	1 cut(s)	438
FaiI	YATR	9 cut(s)	17, 119, 264, 266, 436, 471, 489, 524, 576
FatI	CATG	1 cut(s)	434
FbaI	TGATCA	1 cut(s)	643
FokI	GGATG	1 cut(s)	710
FriOI	GRGCYC	1 cut(s)	823
GlaI	GCGC	1 cut(s)	561
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	28, 154, 521
HapII	CCGG	2 cut(s)	102, 678
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	1 cut(s)	438
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	2 cut(s)	535, 553
HindII	GTYRAC	2 cut(s)	535, 553
HindIII	AAGCTT	2 cut(s)	830, 894
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	2 cut(s)	102, 678
HphI	GGTGA	2 cut(s)	116, 461
Hpy166II	GTNNAC	3 cut(s)	240, 535, 553
Hpy188I	TCNGA	4 cut(s)	399, 615, 648, 842
Hpy188III	TCNNGA	4 cut(s)	35, 322, 442, 569
Hpy8I	GTNNAC	3 cut(s)	240, 535, 553
Hpy99I	CGWCG	2 cut(s)	27, 819
HpyAV	CCTTC	2 cut(s)	279, 681
HpyCH4III	ACNGT	4 cut(s)	224, 545, 812, 860
HpyCH4V	TGCA	8 cut(s)	62, 89, 245, 361, 392, 602, 746, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 178, 635, 913
HpyF3I	CTNAG	5 cut(s)	127, 134, 422, 822, 912
Hsp92II	CATG	1 cut(s)	438
HspAI	GCGC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	5 cut(s)	37, 643, 791, 842, 931
LguI	GCTCTTC	2 cut(s)	179, 278
LmnI	GCTCC	2 cut(s)	19, 680
LweI	GCATC	2 cut(s)	159, 579
MaeIII	GTNAC	3 cut(s)	104, 161, 328
MalI	GATC	5 cut(s)	39, 645, 793, 844, 933
MboI	GATC	5 cut(s)	37, 643, 791, 842, 931
MflI	RGATCY	2 cut(s)	791, 931
MhlI	GDGCHC	1 cut(s)	823
MluCI	AATT	3 cut(s)	347, 356, 662
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	2 cut(s)	390, 638
MseI	TTAA	3 cut(s)	354, 459, 971
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	2 cut(s)	641, 716
MspI	CCGG	2 cut(s)	102, 678
MspR9I	CCNGG	3 cut(s)	274, 290, 513
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	3 cut(s)	274, 290, 513
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	4 cut(s)	51, 178, 635, 913
NdeII	GATC	5 cut(s)	37, 643, 791, 842, 931
NlaIII	CATG	1 cut(s)	438
NlaIV	GGNNCC	2 cut(s)	582, 793
NmeAIII	GCCGAG	2 cut(s)	130, 226
NmuCI	GTSAC	2 cut(s)	104, 328
NruI	TCGCGA	1 cut(s)	570
NspI	RCATGY	1 cut(s)	438
PciI	ACATGT	1 cut(s)	434
PciSI	GCTCTTC	2 cut(s)	179, 278
PctI	GAATGC	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	272
PinAI	ACCGGT	1 cut(s)	101
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PscI	ACATGT	1 cut(s)	434
PsiI	TTATAA	1 cut(s)	471
Psp6I	CCWGG	3 cut(s)	272, 288, 511
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	3 cut(s)	272, 288, 511
PspN4I	GGNNCC	2 cut(s)	582, 793
PspPI	GGNCC	1 cut(s)	153
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	2 cut(s)	791, 931
PvuII	CAGCTG	1 cut(s)	641
RruI	TCGCGA	1 cut(s)	570
RsaI	GTAC	2 cut(s)	862, 965
RsaNI	GTAC	2 cut(s)	861, 964
RseI	CAYNNNNRTG	1 cut(s)	263
SapI	GCTCTTC	2 cut(s)	179, 278
SaqAI	TTAA	3 cut(s)	354, 459, 971
Sau3AI	GATC	5 cut(s)	37, 643, 791, 842, 931
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	3 cut(s)	274, 290, 513
SduI	GDGCHC	1 cut(s)	823
SfaNI	GCATC	2 cut(s)	159, 579
SfcI	CTRYAG	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	347, 356, 662
SsiI	CCGC	2 cut(s)	626, 714
StyD4I	CCNGG	3 cut(s)	272, 288, 511
TaaI	ACNGT	4 cut(s)	224, 545, 812, 860
TaqI	TCGA	4 cut(s)	36, 96, 177, 782
TasI	AATT	3 cut(s)	347, 356, 662
TauI	GCSGC	1 cut(s)	629
Tru1I	TTAA	3 cut(s)	354, 459, 971
Tru9I	TTAA	3 cut(s)	354, 459, 971
TscAI	CASTG	5 cut(s)	64, 142, 227, 247, 426
TseFI	GTSAC	2 cut(s)	104, 328
Tsp45I	GTSAC	2 cut(s)	104, 328
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	5 cut(s)	64, 142, 227, 247, 426
XapI	RAATTY	2 cut(s)	347, 662
XceI	RCATGY	1 cut(s)	438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.