Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001121.1

Orthogroup ID

OG0017672

Physical Location & Seq

Genomic Coordinates Forward (+)

19584 .. 20309

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001121.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgatggagattgatatggagcgtcggccgtctctcgatcaaagctatcgctgctacactgcaactttcttggacaaaaaccaagctgcaaaactcgaaaccggtgacaaaatctttatgccaccctcagccctcagtgtccttttgtctcggcccagcagtaacccgatgctcttcgagctacgaaacccgaatgctgccgagagagagttggtttcacactgtggggttttggagttcactgcattagaagacaccatttatatgccttcctggaagatgaagagcctggacttggaagagggagaccttgttcaagtcaagaatgtgactcttccaaaaggcaaattctttaaattgcaaccccacaccaaaaacttcttggacattgcaaatccgagagctgtgttggagacaacactgaggagttttacatgtttcacgactggtgatactattaagctgccttataatggcaaggaatactatgtggatatcgtagaaacaaagcctggtaaggccataagtatcgttgacacagactgtgaggttgactttgcgcctcctcgcgactataaggaacccgagatgcctgttgctgcagctactcctccgacaaacaaggcggcattggtggcagctgatcagattgaagaacctaaattccaaggagcacatcaatcaaagacccttcaaaggctgcagaaaaatatatattataggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

241

Amino Acids

27.29

Weight (kDa)

5.75

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23750 FvH4_5g23750
rosa_chinensis	RchiOBHm_Chr7g0213071
rosa_laevigata	RLG00000002833
rosa_multiflora	Rmu_co8462811.1_g000001 Rmu_sc0001121.1_g000007
rosa_roxburghii	Rroxscaffold_3G00246260
rosa_rugosa	Rorug07G0139300
rosa_samantha	Rh7AG270600 Rh7CG289900 Rh7DG278800
rosa_wichuraiana	Rw7G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AccII	CGCG	1 cut(s)	570
AciI	CCGC	1 cut(s)	626
AcoI	YGGCCR	1 cut(s)	26
AcsI	RAATTY	2 cut(s)	347, 662
AdeI	CACNNNGTG	1 cut(s)	224
AfiI	CCNNNNNNNGG	3 cut(s)	295, 473, 696
AflIII	ACRYGT	1 cut(s)	434
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	317, 653, 695
AjnI	CCWGG	3 cut(s)	272, 288, 511
AloI	GAACNNNNNNTCC	4 cut(s)	297, 329, 648, 680
AluBI	AGCT	7 cut(s)	45, 86, 181, 404, 463, 605, 641
AluI	AGCT	7 cut(s)	45, 86, 181, 404, 463, 605, 641
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	4 cut(s)	36, 153, 300, 407
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	3 cut(s)	26, 152, 519
ApeKI	GCWGC	8 cut(s)	51, 86, 197, 463, 599, 602, 638, 700
ApoI	RAATTY	2 cut(s)	347, 662
AsiGI	ACCGGT	1 cut(s)	101
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	116, 461
AvaI	CYCGRG	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	676
BbvCI	CCTCAGC	1 cut(s)	127
BbvI	GCAGC	8 cut(s)	38, 73, 184, 450, 586, 614, 650, 687
BceAI	ACGGC	1 cut(s)	13
BciT130I	CCWGG	3 cut(s)	274, 290, 513
BclI	TGATCA	1 cut(s)	643
BcoDI	GTCTC	4 cut(s)	36, 153, 300, 407
BfmI	CTRYAG	2 cut(s)	600, 701
BisI	GCNGC	9 cut(s)	52, 87, 198, 464, 600, 603, 627, 639, 701
BlsI	GCNGC	9 cut(s)	53, 88, 199, 465, 601, 604, 628, 640, 702
Bme1390I	CCNGG	3 cut(s)	274, 290, 513
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	3 cut(s)	274, 290, 513
BmsI	GCATC	2 cut(s)	159, 579
BpiI	GAAGAC	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	667
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 473, 696
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	451
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	3 cut(s)	274, 290, 513
BseDI	CCNNGG	1 cut(s)	667
BseLI	CCNNNNNNNGG	3 cut(s)	295, 473, 696
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	141, 148, 413
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	3 cut(s)	439, 555, 600
BseX3I	CGGCCG	1 cut(s)	26
BseXI	GCAGC	8 cut(s)	38, 73, 184, 450, 586, 614, 650, 687
BseYI	CCCAGC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	570
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	3 cut(s)	28, 154, 521
BshTI	ACCGGT	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	676
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	1 cut(s)	102
BslI	CCNNNNNNNGG	3 cut(s)	295, 473, 696
BsmAI	GTCTC	4 cut(s)	36, 153, 300, 407
BsmBI	CGTCTC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	28, 154, 521
Bso31I	GGTCTC	1 cut(s)	300
BsoBI	CYCGRG	1 cut(s)	584
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp143I	GATC	2 cut(s)	37, 643
Bsp68I	TCGCGA	1 cut(s)	570
BspACI	CCGC	1 cut(s)	626
BspANI	GGCC	3 cut(s)	28, 154, 521
BspCNI	CTCAG	3 cut(s)	140, 147, 414
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	2 cut(s)	604, 705
BspQI	GCTCTTC	2 cut(s)	179, 278
BspTNI	GGTCTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	387
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	667
BssMI	GATC	2 cut(s)	37, 643
BssT1I	CCWWGG	1 cut(s)	667
Bst2UI	CCWGG	3 cut(s)	274, 290, 513
Bst4CI	ACNGT	2 cut(s)	224, 545
Bst6I	CTCTTC	4 cut(s)	179, 278, 294, 339
BstDEI	CTNAG	3 cut(s)	127, 134, 422
BstFNI	CGCG	1 cut(s)	570
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	2 cut(s)	40, 646
BstMAI	GTCTC	4 cut(s)	36, 153, 300, 407
BstMBI	GATC	2 cut(s)	37, 643
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 178, 635
BstNI	CCWGG	3 cut(s)	274, 290, 513
BstNSI	RCATGY	1 cut(s)	438
BstSCI	CCNGG	3 cut(s)	272, 288, 511
BstSFI	CTRYAG	2 cut(s)	600, 701
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	8 cut(s)	38, 73, 184, 450, 586, 614, 650, 687
BstV2I	GAAGAC	1 cut(s)	258
BstZI	CGGCCG	1 cut(s)	26
BsuRI	GGCC	3 cut(s)	28, 154, 521
BtsI	GCAGTG	2 cut(s)	57, 240
BtsIMutI	CAGTG	5 cut(s)	57, 142, 220, 240, 419
BtuMI	TCGCGA	1 cut(s)	570
CfoI	GCGC	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	1 cut(s)	153
CseI	GACGC	1 cut(s)	11
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	1 cut(s)	435
DdeI	CTNAG	3 cut(s)	127, 134, 422
DpnI	GATC	2 cut(s)	39, 645
DpnII	GATC	2 cut(s)	37, 643
DraI	TTTAAA	1 cut(s)	355
DraIII	CACNNNGTG	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	26
EagI	CGGCCG	1 cut(s)	26
Eam1104I	CTCTTC	4 cut(s)	179, 278, 294, 339
EarI	CTCTTC	4 cut(s)	179, 278, 294, 339
EclXI	CGGCCG	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	667
Eco31I	GGTCTC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	496
Eco52I	CGGCCG	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	272, 288, 511
EcoRV	GATATC	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	667
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	1 cut(s)	438
FatI	CATG	1 cut(s)	434
FbaI	TGATCA	1 cut(s)	643
Fnu4HI	GCNGC	9 cut(s)	52, 87, 198, 464, 600, 603, 627, 639, 701
Fsp4HI	GCNGC	9 cut(s)	52, 87, 198, 464, 600, 603, 627, 639, 701
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	9 cut(s)	52, 87, 198, 464, 600, 603, 627, 639, 701
GsaI	CCCAGC	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	28, 154, 521
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	1 cut(s)	438
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	2 cut(s)	535, 553
HindII	GTYRAC	2 cut(s)	535, 553
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	2 cut(s)	116, 461
Hpy166II	GTNNAC	3 cut(s)	240, 535, 553
Hpy188I	TCNGA	3 cut(s)	399, 615, 648
Hpy188III	TCNNGA	4 cut(s)	35, 322, 442, 569
Hpy8I	GTNNAC	3 cut(s)	240, 535, 553
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	2 cut(s)	279, 701
HpyCH4III	ACNGT	2 cut(s)	224, 545
HpyCH4V	TGCA	7 cut(s)	62, 89, 245, 361, 392, 602, 703
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 178, 635
HpyF3I	CTNAG	3 cut(s)	127, 134, 422
Hsp92II	CATG	1 cut(s)	438
HspAI	GCGC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	37, 643
LguI	GCTCTTC	2 cut(s)	179, 278
LmnI	GCTCC	2 cut(s)	19, 671
Lsp1109I	GCAGC	8 cut(s)	38, 73, 184, 450, 586, 614, 650, 687
LweI	GCATC	2 cut(s)	159, 579
MaeIII	GTNAC	3 cut(s)	104, 161, 328
MalI	GATC	2 cut(s)	39, 645
MboI	GATC	2 cut(s)	37, 643
MboII	GAAGA	7 cut(s)	166, 263, 289, 295, 311, 326, 665
MhlI	GDGCHC	1 cut(s)	676
MluCI	AATT	3 cut(s)	347, 356, 662
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	2 cut(s)	390, 638
MnlI	CCTC	8 cut(s)	136, 143, 295, 417, 541, 573, 576, 621
MseI	TTAA	2 cut(s)	354, 459
MslI	CAYNNNNRTG	1 cut(s)	263
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	3 cut(s)	274, 290, 513
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	3 cut(s)	274, 290, 513
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	3 cut(s)	51, 178, 635
NdeII	GATC	2 cut(s)	37, 643
NlaIII	CATG	1 cut(s)	438
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	2 cut(s)	130, 226
NmuCI	GTSAC	2 cut(s)	104, 328
NruI	TCGCGA	1 cut(s)	570
NspI	RCATGY	1 cut(s)	438
PciI	ACATGT	1 cut(s)	434
PciSI	GCTCTTC	2 cut(s)	179, 278
PctI	GAATGC	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	272
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	9 cut(s)	53, 88, 199, 465, 601, 604, 628, 640, 702
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PscI	ACATGT	1 cut(s)	434
PsiI	TTATAA	1 cut(s)	471
Psp6I	CCWGG	3 cut(s)	272, 288, 511
PspFI	CCCAGC	1 cut(s)	155
PspGI	CCWGG	3 cut(s)	272, 288, 511
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	153
PstI	CTGCAG	2 cut(s)	604, 705
PvuII	CAGCTG	1 cut(s)	641
RruI	TCGCGA	1 cut(s)	570
RseI	CAYNNNNRTG	1 cut(s)	263
SapI	GCTCTTC	2 cut(s)	179, 278
SaqAI	TTAA	2 cut(s)	354, 459
SatI	GCNGC	9 cut(s)	52, 87, 198, 464, 600, 603, 627, 639, 701
Sau3AI	GATC	2 cut(s)	37, 643
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	3 cut(s)	274, 290, 513
SduI	GDGCHC	1 cut(s)	676
SfaNI	GCATC	2 cut(s)	159, 579
SfcI	CTRYAG	2 cut(s)	600, 701
SmiMI	CAYNNNNRTG	1 cut(s)	263
Sse9I	AATT	3 cut(s)	347, 356, 662
SsiI	CCGC	1 cut(s)	626
StyD4I	CCNGG	3 cut(s)	272, 288, 511
StyI	CCWWGG	1 cut(s)	667
TaaI	ACNGT	2 cut(s)	224, 545
TaqI	TCGA	3 cut(s)	36, 96, 177
TasI	AATT	3 cut(s)	347, 356, 662
TauI	GCSGC	1 cut(s)	629
Tru1I	TTAA	2 cut(s)	354, 459
Tru9I	TTAA	2 cut(s)	354, 459
TscAI	CASTG	5 cut(s)	64, 142, 227, 247, 426
TseFI	GTSAC	2 cut(s)	104, 328
TseI	GCWGC	8 cut(s)	51, 86, 197, 463, 599, 602, 638, 700
Tsp45I	GTSAC	2 cut(s)	104, 328
TspDTI	ATGAA	1 cut(s)	296
TspRI	CASTG	5 cut(s)	64, 142, 227, 247, 426
XapI	RAATTY	2 cut(s)	347, 662
XceI	RCATGY	1 cut(s)	438
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.