Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017672

Physical Location & Seq

Genomic Coordinates Reverse (-)

30239769 .. 30240788

Gene Structure 1020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19071

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGATTCTTTAAACATAGAACAGAATTGGGTACGGCAACGGATGATGGAGATTGATATGGAGCGTCGGCCGTCTCTCGATCTAAGCTATCGCTGCTATTCTGCAACTTTCTTGGACAAAAACCAAGCTGCAAAACTGGAAACCGGTGACAAAATCTTCATGCCACCCTCAGCCCTCAGTGTCCTTTTGTCTCTGCCCAGCAGTAACCCGATGCTCTTCCAGCTACGAAACCCGAATGCTGCCGAGAGAGAGTTGGTTTCACACTGTGGGGTTTTGGAGTTCACTGCATTAGAAGACACCATTTATATGCCTTCCTGGAAGATGAAGAGCCTGGACTTGGAAGAGGGAGAACTTGTTCAAGTCAAGAATGTGACTCTTCCAAAAGGCAAATTCGTTAAATTGCAACCCCACACCAAAAACTTCTTGGACATTGCAAATCCGAGAGCTATGTTGGAGACAACACTGAGGAGTTTTACATGTTTCACAACTGGTGATACTATCAAGCTGCCTTATAATGGCAAGGAGTACTATGTGGATATCGTAGAAACAAAGCCTGGTAAGGCCATAAGTATCGTTGACACAGACTGTGAGGTTGACTTTGCCCCTCCTCGTGACTATAAGGAACCCGAGATGCCTGTTGCTGCAGCTTCTTCTCCGACAAACAAGGCGGCATTGGTGGCAGCTGATCAGATTGAAGAACCTAAATTCAACCCTTTTACCGGAGCTGGAAGGCGTTTGGATGGAAAACCTTTGTCCGCTGCCCCAGTTTCTTCTTCCTCATTAGTTGCAGCAGCCAATAATGGTAAGGGAAATGCACAGCCATCGAATACAGGATCCAGCTCACAAGGGACCAGTCGTCGGGCTCAGGGGAAGCTTGTTTTCGGATCAAATGCTGCCAACCGTACTACTACTCCAAAGGAAACAGAAAAGGAAGCTTCAAAAGAGCAGGCTAAGCCAGAAAAGAAAGAAGATCCAAAGTTCCAGCCCTTTACAGGGAAAAGGTACTCATTAAAGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

339

Amino Acids

37.38

Weight (kDa)

8.49

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	29 - 127	4.4e-29	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	128 - 203	3.2e-33	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017672)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23750 FvH4_5g23750
rosa_chinensis	RchiOBHm_Chr7g0213071
rosa_laevigata	RLG00000002833
rosa_multiflora	Rmu_co8462811.1_g000001 Rmu_sc0001121.1_g000007
rosa_roxburghii	Rroxscaffold_3G00246260
rosa_rugosa	Rorug07G0139300
rosa_samantha	Rh7AG270600 Rh7CG289900 Rh7DG278800
rosa_wichuraiana	Rw7G023510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AciI	CCGC	2 cut(s)	668, 756
AclWI	GGATC	4 cut(s)	828, 841, 892, 965
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	389, 704
AdeI	CACNNNGTG	1 cut(s)	266
AfaI	GTAC	4 cut(s)	33, 527, 904, 1004
AfiI	CCNNNNNNNGG	6 cut(s)	337, 515, 719, 858, 992, 993
AflIII	ACRYGT	1 cut(s)	476
AgeI	ACCGGT	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	359, 695, 709, 939
AhdI	GACNNNNNGTC	1 cut(s)	855
AjnI	CCWGG	3 cut(s)	314, 330, 553
AloI	GAACNNNNNNTCC	2 cut(s)	339, 371
Alw26I	GTCTC	3 cut(s)	78, 195, 449
AlwI	GGATC	4 cut(s)	828, 841, 892, 965
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	2 cut(s)	68, 561
ApoI	RAATTY	2 cut(s)	389, 704
AsiGI	ACCGGT	1 cut(s)	143
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	1 cut(s)	849
AsuHPI	GGTGA	2 cut(s)	158, 503
AvaI	CYCGRG	1 cut(s)	626
AvaII	GGWCC	1 cut(s)	849
BamHI	GGATCC	1 cut(s)	833
BanII	GRGCYC	1 cut(s)	865
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	1 cut(s)	300
BbvCI	CCTCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	40, 734, 829
BceAI	ACGGC	2 cut(s)	50, 55
BcgI	CGANNNNNNTGC	2 cut(s)	804, 838
BciT130I	CCWGG	3 cut(s)	316, 332, 555
BclI	TGATCA	1 cut(s)	685
BcoDI	GTCTC	3 cut(s)	78, 195, 449
BfmI	CTRYAG	1 cut(s)	642
BlpI	GCTNAGC	1 cut(s)	951
BmcAI	AGTACT	1 cut(s)	527
Bme1390I	CCNGG	3 cut(s)	316, 332, 555
Bme18I	GGWCC	1 cut(s)	849
BmeRI	GACNNNNNGTC	1 cut(s)	855
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	1 cut(s)	849
BmiI	GGNNCC	3 cut(s)	624, 835, 850
BmrFI	CCNGG	3 cut(s)	316, 332, 555
BmrI	ACTGGG	1 cut(s)	758
BmsI	GCATC	2 cut(s)	201, 621
BmuI	ACTGGG	1 cut(s)	758
BpiI	GAAGAC	1 cut(s)	300
Bpu10I	CCTNAGC	2 cut(s)	169, 864
Bpu1102I	GCTNAGC	1 cut(s)	951
BsaWI	WCCGGW	2 cut(s)	143, 719
BsaXI	ACNNNNNCTCC	4 cut(s)	339, 369, 895, 925
Bsc4I	CCNNNNNNNGG	6 cut(s)	337, 515, 719, 858, 992, 993
Bse118I	RCCGGY	1 cut(s)	143
Bse1I	ACTGG	4 cut(s)	141, 493, 764, 852
Bse3DI	GCAATG	1 cut(s)	429
BseBI	CCWGG	3 cut(s)	316, 332, 555
BseGI	GGATG	2 cut(s)	48, 745
BseLI	CCNNNNNNNGG	6 cut(s)	337, 515, 719, 858, 992, 993
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	4 cut(s)	183, 190, 455, 878
BseNI	ACTGG	4 cut(s)	141, 493, 764, 852
BseRI	GAGGAG	2 cut(s)	481, 597
BseX3I	CGGCCG	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	70, 563
BshTI	ACCGGT	1 cut(s)	143
BsiEI	CGRYCG	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	2 cut(s)	144, 720
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	6 cut(s)	337, 515, 719, 858, 992, 993
BsmAI	GTCTC	3 cut(s)	78, 195, 449
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	862
BsmI	GAATGC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	70, 563
BsoBI	CYCGRG	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	865
Bsp143I	GATC	5 cut(s)	79, 685, 833, 884, 970
Bsp1720I	GCTNAGC	1 cut(s)	951
BspACI	CCGC	2 cut(s)	668, 756
BspANI	GGCC	2 cut(s)	70, 563
BspCNI	CTCAG	4 cut(s)	182, 189, 456, 877
BspLI	GGNNCC	3 cut(s)	624, 835, 850
BspMAI	CTGCAG	1 cut(s)	646
BspPI	GGATC	4 cut(s)	828, 841, 892, 965
BspQI	GCTCTTC	2 cut(s)	221, 320
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	143
BsrI	ACTGG	4 cut(s)	141, 493, 764, 852
BssAI	RCCGGY	1 cut(s)	143
BssMI	GATC	5 cut(s)	79, 685, 833, 884, 970
BssSI	CACGAG	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	3 cut(s)	316, 332, 555
Bst4CI	ACNGT	3 cut(s)	266, 587, 902
Bst6I	CTCTTC	4 cut(s)	221, 320, 336, 381
BstC8I	GCNNGC	1 cut(s)	948
BstDEI	CTNAG	6 cut(s)	83, 169, 176, 464, 864, 951
BstF5I	GGATG	2 cut(s)	48, 745
BstKTI	GATC	5 cut(s)	82, 688, 836, 887, 973
BstMAI	GTCTC	3 cut(s)	78, 195, 449
BstMBI	GATC	5 cut(s)	79, 685, 833, 884, 970
BstMCI	CGRYCG	1 cut(s)	71
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 220, 677, 952
BstNI	CCWGG	3 cut(s)	316, 332, 555
BstNSI	RCATGY	1 cut(s)	480
BstSCI	CCNGG	3 cut(s)	314, 330, 553
BstSFI	CTRYAG	1 cut(s)	642
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	2 cut(s)	833, 970
BstYI	RGATCY	2 cut(s)	833, 970
BstZI	CGGCCG	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	70, 563
BtsCI	GGATG	2 cut(s)	48, 745
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	4 cut(s)	184, 262, 282, 461
Cac8I	GCNNGC	1 cut(s)	948
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	849
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	4 cut(s)	32, 526, 903, 1003
CspAI	ACCGGT	1 cut(s)	143
CviAII	CATG	2 cut(s)	160, 477
CviQI	GTAC	4 cut(s)	32, 526, 903, 1003
DdeI	CTNAG	6 cut(s)	83, 169, 176, 464, 864, 951
DpnI	GATC	5 cut(s)	81, 687, 835, 886, 972
DpnII	GATC	5 cut(s)	79, 685, 833, 884, 970
DraI	TTTAAA	1 cut(s)	12
DraIII	CACNNNGTG	1 cut(s)	266
DriI	GACNNNNNGTC	1 cut(s)	855
EaeI	YGGCCR	1 cut(s)	68
EagI	CGGCCG	1 cut(s)	68
Eam1104I	CTCTTC	4 cut(s)	221, 320, 336, 381
Eam1105I	GACNNNNNGTC	1 cut(s)	855
EarI	CTCTTC	4 cut(s)	221, 320, 336, 381
EclXI	CGGCCG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	865
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	849
Eco52I	CGGCCG	1 cut(s)	68
Eco88I	CYCGRG	1 cut(s)	626
EcoRII	CCWGG	3 cut(s)	314, 330, 553
EcoRV	GATATC	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	865
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	2 cut(s)	163, 480
FaqI	GGGAC	1 cut(s)	862
FatI	CATG	2 cut(s)	159, 476
FbaI	TGATCA	1 cut(s)	685
FokI	GGATG	2 cut(s)	55, 752
FriOI	GRGCYC	1 cut(s)	865
GsaI	CCCAGC	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	70, 563
HapII	CCGG	2 cut(s)	144, 720
HgaI	GACGC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	163, 480
HincII	GTYRAC	2 cut(s)	577, 595
HindII	GTYRAC	2 cut(s)	577, 595
HindIII	AAGCTT	2 cut(s)	872, 933
HinfI	GANTC	2 cut(s)	5, 373
HpaII	CCGG	2 cut(s)	144, 720
HphI	GGTGA	2 cut(s)	158, 503
Hpy166II	GTNNAC	3 cut(s)	282, 577, 595
Hpy188I	TCNGA	4 cut(s)	441, 657, 690, 884
Hpy188III	TCNNGA	3 cut(s)	77, 364, 611
Hpy8I	GTNNAC	3 cut(s)	282, 577, 595
Hpy99I	CGWCG	2 cut(s)	69, 861
HpyAV	CCTTC	2 cut(s)	321, 723
HpyCH4III	ACNGT	3 cut(s)	266, 587, 902
HpyCH4V	TGCA	8 cut(s)	104, 131, 287, 403, 434, 644, 788, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 220, 677, 952
HpyF3I	CTNAG	6 cut(s)	83, 169, 176, 464, 864, 951
Hsp92II	CATG	2 cut(s)	163, 480
Ksp22I	TGATCA	1 cut(s)	685
Kzo9I	GATC	5 cut(s)	79, 685, 833, 884, 970
LguI	GCTCTTC	2 cut(s)	221, 320
LmnI	GCTCC	2 cut(s)	61, 722
LweI	GCATC	2 cut(s)	201, 621
MaeIII	GTNAC	4 cut(s)	146, 203, 370, 611
MalI	GATC	5 cut(s)	81, 687, 835, 886, 972
MboI	GATC	5 cut(s)	79, 685, 833, 884, 970
MflI	RGATCY	2 cut(s)	833, 970
MhlI	GDGCHC	1 cut(s)	865
MluCI	AATT	4 cut(s)	25, 389, 398, 704
MlyI	GAGTC	1 cut(s)	367
MmeI	TCCRAC	2 cut(s)	432, 680
MnlI	CCTC	8 cut(s)	178, 185, 337, 459, 583, 615, 618, 787
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	3 cut(s)	11, 396, 1010
MslI	CAYNNNNRTG	1 cut(s)	305
MspA1I	CMGCKG	2 cut(s)	683, 758
MspI	CCGG	2 cut(s)	144, 720
MspR9I	CCNGG	3 cut(s)	316, 332, 555
Mva1269I	GAATGC	1 cut(s)	241
MvaI	CCWGG	3 cut(s)	316, 332, 555
MwoI	GCNNNNNNNGC	4 cut(s)	93, 220, 677, 952
NdeII	GATC	5 cut(s)	79, 685, 833, 884, 970
NlaIII	CATG	2 cut(s)	163, 480
NlaIV	GGNNCC	3 cut(s)	624, 835, 850
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	3 cut(s)	146, 370, 611
NspI	RCATGY	1 cut(s)	480
PciI	ACATGT	1 cut(s)	476
PciSI	GCTCTTC	2 cut(s)	221, 320
PctI	GAATGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	5
PfoI	TCCNGGA	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	143
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PscI	ACATGT	1 cut(s)	476
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	3 cut(s)	314, 330, 553
PspFI	CCCAGC	1 cut(s)	197
PspGI	CCWGG	3 cut(s)	314, 330, 553
PspN4I	GGNNCC	3 cut(s)	624, 835, 850
PspPI	GGNCC	1 cut(s)	849
PstI	CTGCAG	1 cut(s)	646
PsuI	RGATCY	2 cut(s)	833, 970
PvuII	CAGCTG	1 cut(s)	683
RsaI	GTAC	4 cut(s)	33, 527, 904, 1004
RsaNI	GTAC	4 cut(s)	32, 526, 903, 1003
RseI	CAYNNNNRTG	1 cut(s)	305
SapI	GCTCTTC	2 cut(s)	221, 320
SaqAI	TTAA	3 cut(s)	11, 396, 1010
Sau3AI	GATC	5 cut(s)	79, 685, 833, 884, 970
Sau96I	GGNCC	1 cut(s)	849
ScaI	AGTACT	1 cut(s)	527
SchI	GAGTC	1 cut(s)	367
ScrFI	CCNGG	3 cut(s)	316, 332, 555
SduI	GDGCHC	1 cut(s)	865
SfaNI	GCATC	2 cut(s)	201, 621
SfcI	CTRYAG	1 cut(s)	642
SinI	GGWCC	1 cut(s)	849
SmiMI	CAYNNNNRTG	1 cut(s)	305
Sse9I	AATT	4 cut(s)	25, 389, 398, 704
SsiI	CCGC	2 cut(s)	668, 756
StyD4I	CCNGG	3 cut(s)	314, 330, 553
TaaI	ACNGT	3 cut(s)	266, 587, 902
TaqI	TCGA	2 cut(s)	78, 824
TasI	AATT	4 cut(s)	25, 389, 398, 704
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	1 cut(s)	671
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	3 cut(s)	11, 396, 1010
Tru9I	TTAA	3 cut(s)	11, 396, 1010
TscAI	CASTG	4 cut(s)	184, 269, 289, 468
TseFI	GTSAC	3 cut(s)	146, 370, 611
Tsp45I	GTSAC	3 cut(s)	146, 370, 611
TspDTI	ATGAA	2 cut(s)	148, 338
TspGWI	ACGGA	1 cut(s)	55
TspRI	CASTG	4 cut(s)	184, 269, 289, 468
VpaK11BI	GGWCC	1 cut(s)	849
XapI	RAATTY	2 cut(s)	389, 704
XceI	RCATGY	1 cut(s)	480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.