FvH4_5g24910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018310
Physical Location & Seq
Forward (+)
16344685 .. 16345968
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24910.t1

Sequence Viewer

Length: 576 bp
ATGGCTTCCAGGACCTTCATGGTAAGCTTCTTGCTGGTTGTTCTCCTTTCAGAGAAAAACTTTGATTTGATAGCAGCGTCAAGGCCGCTAAGTATACAGCCACCAGTACTAATCCATAAAGGATGGTCAAGCAAGCCAAAACCACCTTCCACTGCGGGATTTACTATAAGCCGCTACAAGCTGATGCAGGCCGCTTCAACTGATGCCTTCCGGCCAACTTCTCCCGGTCATAGTCCCGGCGTTGGCCATGACGTACCACCTGATATCCTAGCGCCTCCACTCTCTTTTCCAAGTTCGATTGCGAGAGGTGATGCCTCACACAACGACTTTTCTACTGCGGATTACACAAACACGATTCGTCCTAGATCTCCCGGCCCCATGCTTTCCAACGGTTTGAAGCCATTAATTTGCAATTTTATTGTCGATGTCAGCGACGCTCTTGGGTTAGGTTCAGTGTCGACTAGGACTACAGTCACCGGAATCAAAGAAGCTTTTGGAGATGGCAGTGGTCTGCCGATTGGATTGGGTGCTAAAGGTTCTAGATCTGGGTTTGGGACCCATGCATCATCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

19.92

Weight (kDa)

9.66

Isoelectric Point (pI)

36.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31670 AT2G35612
fragaria_vesca FvH4_5g24910
prunus_persica Prupe.5G014000_v2.0.a1
rosa_roxburghii Rroxscaffold_3G00244440
rosa_samantha Rh7AG287900 Rh7BG279700 Rh7CG307700 Rh7DG291200
rosa_wichuraiana Rw7G024580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 94, 458
AciI CCGC 5 cut(s) 86, 155, 172, 192, 338
AcoI YGGCCR 2 cut(s) 212, 244
AfaI GTAC 2 cut(s) 108, 255
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 2 cut(s) 198, 397
AjnI CCWGG 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 130, 162
AluBI AGCT 3 cut(s) 27, 181, 491
AluI AGCT 3 cut(s) 27, 181, 491
AoxI GGCC 5 cut(s) 83, 189, 212, 244, 373
ApeKI GCWGC 1 cut(s) 74
AseI ATTAAT 1 cut(s) 404
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 3 cut(s) 12, 374, 555
AsuC2I CCSGG 3 cut(s) 225, 237, 372
AsuHPI GGTGA 2 cut(s) 320, 466
AvaII GGWCC 2 cut(s) 12, 555
BalI TGGCCA 1 cut(s) 246
BbvI GCAGC 1 cut(s) 86
BccI CCATC 2 cut(s) 117, 494
BciT130I CCWGG 1 cut(s) 10
BcnI CCSGG 3 cut(s) 225, 237, 372
BfaI CTAG 4 cut(s) 269, 363, 462, 540
BfmI CTRYAG 1 cut(s) 468
BfoI RGCGCY 1 cut(s) 275
BglII AGATCT 2 cut(s) 365, 542
BisI GCNGC 4 cut(s) 75, 86, 172, 192
BlsI GCNGC 4 cut(s) 76, 87, 173, 193
BmcAI AGTACT 1 cut(s) 108
Bme1390I CCNGG 4 cut(s) 10, 225, 237, 372
Bme18I GGWCC 2 cut(s) 12, 555
BmgT120I GGNCC 3 cut(s) 12, 374, 555
BmiI GGNNCC 3 cut(s) 376, 556, 557
BmrFI CCNGG 4 cut(s) 10, 225, 237, 372
BmsI GCATC 4 cut(s) 174, 193, 301, 572
BoxI GACNNNNGTC 1 cut(s) 470
BpuMI CCSGG 3 cut(s) 225, 237, 372
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 10
BseGI GGATG 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 5 cut(s) 85, 191, 214, 246, 375
BsiSI CCGG 5 cut(s) 211, 225, 237, 372, 477
BslFI GGGAC 2 cut(s) 219, 568
BslI CCNNNNNNNGG 1 cut(s) 242
BsmFI GGGAC 2 cut(s) 219, 568
BsnI GGCC 5 cut(s) 85, 191, 214, 246, 375
Bsp143I GATC 2 cut(s) 365, 542
BspACI CCGC 5 cut(s) 86, 155, 172, 192, 338
BspANI GGCC 5 cut(s) 85, 191, 214, 246, 375
BspLI GGNNCC 3 cut(s) 376, 556, 557
BsrI ACTGG 1 cut(s) 104
BssMI GATC 2 cut(s) 365, 542
BssNAI GTATAC 1 cut(s) 95
Bst1107I GTATAC 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 392, 472
BstC8I GCNNGC 2 cut(s) 134, 189
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 128
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 2 cut(s) 368, 545
BstMBI GATC 2 cut(s) 365, 542
BstNI CCWGG 1 cut(s) 10
BstPAI GACNNNNGTC 1 cut(s) 470
BstSCI CCNGG 4 cut(s) 8, 223, 235, 370
BstSFI CTRYAG 1 cut(s) 468
BstV1I GCAGC 1 cut(s) 86
BstX2I RGATCY 2 cut(s) 365, 542
BstYI RGATCY 2 cut(s) 365, 542
BstZ17I GTATAC 1 cut(s) 95
BsuRI GGCC 5 cut(s) 85, 191, 214, 246, 375
BtsCI GGATG 1 cut(s) 128
BtsI GCAGTG 2 cut(s) 150, 511
BtsIMutI CAGTG 3 cut(s) 150, 459, 511
Cac8I GCNNGC 2 cut(s) 134, 189
CfoI GCGC 1 cut(s) 274
Cfr13I GGNCC 3 cut(s) 12, 374, 555
CseI GACGC 2 cut(s) 66, 443
Csp6I GTAC 2 cut(s) 107, 254
CviAII CATG 4 cut(s) 19, 248, 379, 560
CviQI GTAC 2 cut(s) 107, 254
DdeI CTNAG 1 cut(s) 89
DpnI GATC 2 cut(s) 367, 544
DpnII GATC 2 cut(s) 365, 542
EaeI YGGCCR 2 cut(s) 212, 244
Eco32I GATATC 1 cut(s) 265
Eco47I GGWCC 2 cut(s) 12, 555
EcoO109I RGGNCCY 2 cut(s) 12, 555
EcoRII CCWGG 1 cut(s) 8
EcoRV GATATC 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 565
FaeI CATG 4 cut(s) 22, 251, 382, 563
FaiI YATR 8 cut(s) 20, 95, 117, 167, 231, 249, 380, 561
FaqI GGGAC 2 cut(s) 219, 568
FatI CATG 4 cut(s) 18, 247, 378, 559
FauI CCCGC 1 cut(s) 148
FblI GTMKAC 2 cut(s) 94, 458
Fnu4HI GCNGC 4 cut(s) 75, 86, 172, 192
FokI GGATG 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 75, 86, 172, 192
FspBI CTAG 4 cut(s) 269, 363, 462, 540
GlaI GCGC 1 cut(s) 273
GluI GCNGC 4 cut(s) 75, 86, 172, 192
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 5 cut(s) 85, 191, 214, 246, 375
HapII CCGG 5 cut(s) 211, 225, 237, 372, 477
HgaI GACGC 2 cut(s) 66, 443
HhaI GCGC 1 cut(s) 274
Hin1II CATG 4 cut(s) 22, 251, 382, 563
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HindIII AAGCTT 2 cut(s) 25, 489
HinfI GANTC 2 cut(s) 355, 480
HpaII CCGG 5 cut(s) 211, 225, 237, 372, 477
HphI GGTGA 2 cut(s) 320, 466
Hpy166II GTNNAC 2 cut(s) 95, 459
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 540
Hpy8I GTNNAC 2 cut(s) 95, 459
Hpy99I CGWCG 1 cut(s) 437
HpyAV CCTTC 3 cut(s) 25, 156, 217
HpyCH4III ACNGT 2 cut(s) 392, 472
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 187, 411, 563
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 4 cut(s) 22, 251, 382, 563
HspAI GCGC 1 cut(s) 272
KflI GGGWCCC 1 cut(s) 555
Kzo9I GATC 2 cut(s) 365, 542
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 4 cut(s) 174, 193, 301, 572
MaeI CTAG 4 cut(s) 269, 363, 462, 540
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 472
MalI GATC 2 cut(s) 367, 544
MboI GATC 2 cut(s) 365, 542
MflI RGATCY 2 cut(s) 365, 542
MlsI TGGCCA 1 cut(s) 246
MluCI AATT 3 cut(s) 405, 412, 570
MluNI TGGCCA 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 411
MnlI CCTC 3 cut(s) 285, 299, 325
Mox20I TGGCCA 1 cut(s) 246
Mph1103I ATGCAT 1 cut(s) 565
MscI TGGCCA 1 cut(s) 246
MseI TTAA 1 cut(s) 404
Msp20I TGGCCA 1 cut(s) 246
MspI CCGG 5 cut(s) 211, 225, 237, 372, 477
MspR9I CCNGG 4 cut(s) 10, 225, 237, 372
MvaI CCWGG 1 cut(s) 10
NciI CCSGG 3 cut(s) 225, 237, 372
NdeII GATC 2 cut(s) 365, 542
NlaIII CATG 4 cut(s) 22, 251, 382, 563
NlaIV GGNNCC 3 cut(s) 376, 556, 557
NmuCI GTSAC 1 cut(s) 472
NsiI ATGCAT 1 cut(s) 565
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 2 cut(s) 355, 480
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 4 cut(s) 76, 87, 173, 193
PpuMI RGGWCCY 2 cut(s) 12, 555
PshAI GACNNNNGTC 1 cut(s) 470
PshBI ATTAAT 1 cut(s) 404
Psp5II RGGWCCY 2 cut(s) 12, 555
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 3 cut(s) 376, 556, 557
PspPI GGNCC 3 cut(s) 12, 374, 555
PspPPI RGGWCCY 2 cut(s) 12, 555
PsuI RGATCY 2 cut(s) 365, 542
RsaI GTAC 2 cut(s) 108, 255
RsaNI GTAC 2 cut(s) 107, 254
SalI GTCGAC 1 cut(s) 457
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 4 cut(s) 75, 86, 172, 192
Sau3AI GATC 2 cut(s) 365, 542
Sau96I GGNCC 3 cut(s) 12, 374, 555
ScaI AGTACT 1 cut(s) 108
ScrFI CCNGG 4 cut(s) 10, 225, 237, 372
SfaNI GCATC 4 cut(s) 174, 193, 301, 572
SfcI CTRYAG 1 cut(s) 468
SinI GGWCC 2 cut(s) 12, 555
Sse9I AATT 3 cut(s) 405, 412, 570
SsiI CCGC 5 cut(s) 86, 155, 172, 192, 338
SspMI CTAG 4 cut(s) 269, 363, 462, 540
StyD4I CCNGG 4 cut(s) 8, 223, 235, 370
TaaI ACNGT 2 cut(s) 392, 472
TaiI ACGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 296, 423, 458
TasI AATT 3 cut(s) 405, 412, 570
TatI WGTACW 1 cut(s) 106
TauI GCSGC 3 cut(s) 88, 174, 194
TfiI GAWTC 2 cut(s) 355, 480
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TscAI CASTG 3 cut(s) 157, 459, 511
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 3 cut(s) 157, 459, 511
VpaK11BI GGWCC 2 cut(s) 12, 555
VspI ATTAAT 1 cut(s) 404
XbaI TCTAGA 1 cut(s) 539
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmiI GTMKAC 2 cut(s) 94, 458
XspI CTAG 4 cut(s) 269, 363, 462, 540
ZrmI AGTACT 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.