Rh7BG279700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
26025270 .. 26042404
17135 bp
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UTR
Exon/CDS
Intron
Rh7BG279700.1

Sequence Viewer

Length: 210 bp
ATGTTGGCGAAATGCGTTGATCTTGACGCTATGGAGGGTGTCCAGACGTCAAGGCCACTACATATACTGCAGCCACCAGTACTTGTTCGCAAAAGATGGTCGAGCAAGCCAAGACCACCTGCCACTGGGGGAGTTACTACAAAACGCTACAAGCTGACACAGGACTCTTCAGCTGATGCCTTCCGGCCAACATCTCCCGGTATGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.59

Weight (kDa)

10.28

Isoelectric Point (pI)

73.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31670 AT2G35612
fragaria_vesca FvH4_5g24910
prunus_persica Prupe.5G014000_v2.0.a1
rosa_roxburghii Rroxscaffold_3G00244440
rosa_samantha Rh7AG287900 Rh7BG279700 Rh7CG307700 Rh7DG291200
rosa_wichuraiana Rw7G024580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
AatII GACGTC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 185
AcuI CTGAAG 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 1 cut(s) 125
AluBI AGCT 2 cut(s) 154, 173
AluI AGCT 2 cut(s) 154, 173
AoxI GGCC 2 cut(s) 53, 185
ApeKI GCWGC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 198
BbvI GCAGC 1 cut(s) 82
BccI CCATC 1 cut(s) 90
BcnI CCSGG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 127
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
BmcAI AGTACT 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 198
BmrFI CCNGG 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 77, 130
BseLI CCNNNNNNNGG 1 cut(s) 125
BseNI ACTGG 2 cut(s) 77, 130
BseXI GCAGC 1 cut(s) 82
BshFI GGCC 2 cut(s) 55, 187
BsiSI CCGG 2 cut(s) 184, 198
BslI CCNNNNNNNGG 1 cut(s) 125
BsnI GGCC 2 cut(s) 55, 187
Bsp143I GATC 1 cut(s) 19
BspANI GGCC 2 cut(s) 55, 187
BspMAI CTGCAG 1 cut(s) 72
BspMI ACCTGC 1 cut(s) 127
BsrI ACTGG 2 cut(s) 77, 130
BssMI GATC 1 cut(s) 19
BssNI GRCGYC 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 107
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 82
BsuRI GGCC 2 cut(s) 55, 187
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 107
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 80
CviJI RGCY 6 cut(s) 55, 73, 109, 154, 173, 187
CviKI_1 RGCY 6 cut(s) 55, 73, 109, 154, 173, 187
CviQI GTAC 1 cut(s) 80
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
EaeI YGGCCR 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 153
FaiI YATR 4 cut(s) 32, 63, 65, 203
Fnu4HI GCNGC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 71
HaeIII GGCC 2 cut(s) 55, 187
HapII CCGG 2 cut(s) 184, 198
HgaI GACGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 47
HinfI GANTC 1 cut(s) 164
HpaII CCGG 2 cut(s) 184, 198
Hpy188III TCNNGA 2 cut(s) 23, 43
HpyAV CCTTC 1 cut(s) 190
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 1 cut(s) 70
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 47
Kzo9I GATC 1 cut(s) 19
LpnPI CCDG 6 cut(s) 56, 90, 111, 132, 146, 197
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 166
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 133
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 1 cut(s) 159
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 1 cut(s) 28
MseI TTAA 1 cut(s) 208
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 2 cut(s) 184, 198
MspR9I CCNGG 1 cut(s) 198
NciI CCSGG 1 cut(s) 198
NdeII GATC 1 cut(s) 19
PaqCI CACCTGC 1 cut(s) 127
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PstI CTGCAG 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 208
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 19
ScaI AGTACT 1 cut(s) 81
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 198
SetI ASST 4 cut(s) 50, 121, 156, 175
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 196
TaiI ACGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 101
TatI WGTACW 1 cut(s) 79
Tru1I TTAA 1 cut(s) 208
Tru9I TTAA 1 cut(s) 208
TscAI CASTG 1 cut(s) 130
TseI GCWGC 1 cut(s) 70
TspRI CASTG 1 cut(s) 130
ZraI GACGTC 1 cut(s) 48
ZrmI AGTACT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.