Rw7G024580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0018310
Physical Location & Seq
Forward (+)
30312012 .. 30312293
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G024580.1

Sequence Viewer

Length: 282 bp
ATGGCATCAAGAATCTTCATGGTAACCTTTTTTCTGGTTGTTCTCCTTTTAGAGAAAAACTTTGATTTGATAGCAGCGTCAAGGCCACTACATATACTGCAGCCACCAGTACTTGTTCCCAAAAGATGGTCGAGCAAGCGAAGACCACCTGCCACCGGGGGAGTTACTACAAACCGCTACAAGCTGACAGAGGACTCTTCAGCTGATGCCTTCCGGCCAACAAGTCCTGGTCATAGTCCCGGCGTTGGCCATCAAACACCACCTAGTGCACATCTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.23

Weight (kDa)

10.92

Isoelectric Point (pI)

81.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31670 AT2G35612
fragaria_vesca FvH4_5g24910
prunus_persica Prupe.5G014000_v2.0.a1
rosa_roxburghii Rroxscaffold_3G00244440
rosa_samantha Rh7AG287900 Rh7BG279700 Rh7CG307700 Rh7DG291200
rosa_wichuraiana Rw7G024580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 157
Acc36I ACCTGC 1 cut(s) 157
AccB7I CCANNNNNTGG 1 cut(s) 126
AciI CCGC 1 cut(s) 175
AcoI YGGCCR 2 cut(s) 215, 247
AcuI CTGAAG 1 cut(s) 183
AdeI CACNNNGTG 1 cut(s) 266
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 3 cut(s) 126, 155, 245
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 2 cut(s) 184, 203
AluI AGCT 2 cut(s) 184, 203
Alw21I GWGCWC 1 cut(s) 271
Alw44I GTGCAC 1 cut(s) 267
AoxI GGCC 3 cut(s) 83, 215, 247
ApaLI GTGCAC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 74, 100
AsuC2I CCSGG 2 cut(s) 157, 240
BaeGI GKGCMC 1 cut(s) 271
BalI TGGCCA 1 cut(s) 249
BbsI GAAGAC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 86, 112
BccI CCATC 2 cut(s) 120, 258
BciT130I CCWGG 1 cut(s) 228
BcnI CCSGG 2 cut(s) 157, 240
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 98
BfuAI ACCTGC 1 cut(s) 157
BisI GCNGC 2 cut(s) 75, 101
BlsI GCNGC 2 cut(s) 76, 102
BmcAI AGTACT 1 cut(s) 111
Bme1390I CCNGG 3 cut(s) 157, 228, 240
BmrFI CCNGG 3 cut(s) 157, 228, 240
BmsI GCATC 2 cut(s) 14, 196
BpiI GAAGAC 1 cut(s) 148
BpuMI CCSGG 2 cut(s) 157, 240
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 155, 245
Bse1I ACTGG 1 cut(s) 107
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 3 cut(s) 126, 155, 245
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 271
BseXI GCAGC 2 cut(s) 86, 112
BshFI GGCC 3 cut(s) 85, 217, 249
BsiHKAI GWGCWC 1 cut(s) 271
BsiSI CCGG 3 cut(s) 156, 214, 240
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 3 cut(s) 126, 155, 245
BsmFI GGGAC 1 cut(s) 222
BsnI GGCC 3 cut(s) 85, 217, 249
Bsp1286I GDGCHC 1 cut(s) 271
BspACI CCGC 1 cut(s) 175
BspANI GGCC 3 cut(s) 85, 217, 249
BspMAI CTGCAG 1 cut(s) 102
BspMI ACCTGC 1 cut(s) 157
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 137
BstEII GGTNACC 1 cut(s) 22
BstNI CCWGG 1 cut(s) 228
BstPI GGTNACC 1 cut(s) 22
BstSCI CCNGG 3 cut(s) 155, 226, 238
BstSFI CTRYAG 1 cut(s) 98
BstSLI GKGCMC 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 86, 112
BstV2I GAAGAC 1 cut(s) 148
BsuRI GGCC 3 cut(s) 85, 217, 249
BveI ACCTGC 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 137
CseI GACGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 110
CviAII CATG 1 cut(s) 19
CviJI RGCY 6 cut(s) 85, 103, 184, 203, 217, 249
CviKI_1 RGCY 6 cut(s) 85, 103, 184, 203, 217, 249
CviQI GTAC 1 cut(s) 110
DraIII CACNNNGTG 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 215, 247
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 183
Eco91I GGTNACC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 226
FaeI CATG 1 cut(s) 22
FaiI YATR 5 cut(s) 20, 93, 95, 234, 280
FaqI GGGAC 1 cut(s) 222
FatI CATG 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 75, 101
Fsp4HI GCNGC 2 cut(s) 75, 101
FspBI CTAG 1 cut(s) 264
GluI GCNGC 2 cut(s) 75, 101
HaeIII GGCC 3 cut(s) 85, 217, 249
HapII CCGG 3 cut(s) 156, 214, 240
HgaI GACGC 1 cut(s) 66
Hin1II CATG 1 cut(s) 22
HinfI GANTC 2 cut(s) 12, 194
HpaII CCGG 3 cut(s) 156, 214, 240
Hpy166II GTNNAC 1 cut(s) 269
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 220
HpyCH4V TGCA 2 cut(s) 100, 269
Hsp92II CATG 1 cut(s) 22
LpnPI CCDG 8 cut(s) 20, 120, 162, 169, 213, 227, 240, 253
Lsp1109I GCAGC 2 cut(s) 86, 112
LweI GCATC 2 cut(s) 14, 196
MaeI CTAG 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 22, 163
MboII GAAGA 3 cut(s) 7, 153, 189
MhlI GDGCHC 1 cut(s) 271
MlsI TGGCCA 1 cut(s) 249
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 1 cut(s) 184
Mox20I TGGCCA 1 cut(s) 249
MscI TGGCCA 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 249
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 3 cut(s) 156, 214, 240
MspR9I CCNGG 3 cut(s) 157, 228, 240
MvaI CCWGG 1 cut(s) 228
NciI CCSGG 2 cut(s) 157, 240
NlaIII CATG 1 cut(s) 22
PaqCI CACCTGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 12
PflMI CCANNNNNTGG 1 cut(s) 126
PkrI GCNGC 2 cut(s) 76, 102
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 22
PspGI CCWGG 1 cut(s) 226
PstI CTGCAG 1 cut(s) 102
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
SatI GCNGC 2 cut(s) 75, 101
ScaI AGTACT 1 cut(s) 111
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 3 cut(s) 157, 228, 240
SduI GDGCHC 1 cut(s) 271
SetI ASST 5 cut(s) 29, 151, 186, 205, 265
SfaNI GCATC 2 cut(s) 14, 196
SfcI CTRYAG 1 cut(s) 98
SsiI CCGC 1 cut(s) 175
SspMI CTAG 1 cut(s) 264
StyD4I CCNGG 3 cut(s) 155, 226, 238
TaqI TCGA 1 cut(s) 131
TatI WGTACW 1 cut(s) 109
TfiI GAWTC 1 cut(s) 12
TseI GCWGC 2 cut(s) 74, 100
TspDTI ATGAA 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 126
VneI GTGCAC 1 cut(s) 267
XspI CTAG 1 cut(s) 264
ZrmI AGTACT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.