Rh7CG307700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0018310
Physical Location & Seq
Forward (+)
32303004 .. 32304225
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG307700.1

Sequence Viewer

Length: 354 bp
ATGACGCTAGCTAAAGAAGATGTCATGACGCTAGCTAATCTCTCGTGTCTAAATTCTAATCCATGCCACCATCTCATGGCGCAGGGTACAGCTCAAAAGTGGTGCACACGTGGGTGCACTACAAAGAAAAACTTTGATTTGATAGCAGCATCAAGGCCACTACATATACTGCAGCCACCAGTACTTGTTCGCAAAAGATGGTCGAGCAAGCCAAGACCACCTGCCACTGGGGGAGTTACTACAAAACGCTACAAGCTGACACAGGATTCTTCAGCTGATGCCTTCCGGCCAACATCTCCCGGTCATAGTCCCGGCGTTGGCCATCAAACACCACCTAGTGCACCTCTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.68

Weight (kDa)

10.13

Isoelectric Point (pI)

69.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018310)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31670 AT2G35612
fragaria_vesca FvH4_5g24910
prunus_persica Prupe.5G014000_v2.0.a1
rosa_roxburghii Rroxscaffold_3G00244440
rosa_samantha Rh7AG287900 Rh7BG279700 Rh7CG307700 Rh7DG291200
rosa_wichuraiana Rw7G024580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 229
Acc36I ACCTGC 1 cut(s) 229
AccB7I CCANNNNNTGG 1 cut(s) 76
AcoI YGGCCR 2 cut(s) 287, 319
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 255
AcvI CACGTG 1 cut(s) 110
AdeI CACNNNGTG 1 cut(s) 338
AfaI GTAC 2 cut(s) 88, 183
AfiI CCNNNNNNNGG 3 cut(s) 76, 227, 317
AflIII ACRYGT 1 cut(s) 107
AleI CACNNNNGTG 1 cut(s) 112
AluBI AGCT 5 cut(s) 11, 35, 92, 256, 275
AluI AGCT 5 cut(s) 11, 35, 92, 256, 275
Alw21I GWGCWC 3 cut(s) 107, 119, 343
Alw44I GTGCAC 3 cut(s) 103, 115, 339
AoxI GGCC 3 cut(s) 155, 287, 319
ApaLI GTGCAC 3 cut(s) 103, 115, 339
ApeKI GCWGC 2 cut(s) 146, 172
ApoI RAATTY 1 cut(s) 52
AspLEI GCGC 1 cut(s) 82
AsuC2I CCSGG 2 cut(s) 300, 312
AsuNHI GCTAGC 2 cut(s) 7, 31
BaeGI GKGCMC 3 cut(s) 107, 119, 343
BalI TGGCCA 1 cut(s) 321
BauI CACGAG 1 cut(s) 43
BbrPI CACGTG 1 cut(s) 110
Bbv12I GWGCWC 3 cut(s) 107, 119, 343
BbvI GCAGC 2 cut(s) 158, 184
BccI CCATC 3 cut(s) 78, 192, 330
BcnI CCSGG 2 cut(s) 300, 312
BfaI CTAG 3 cut(s) 8, 32, 336
BfmI CTRYAG 1 cut(s) 170
BfuAI ACCTGC 1 cut(s) 229
BisI GCNGC 2 cut(s) 147, 173
BlsI GCNGC 2 cut(s) 148, 174
BmcAI AGTACT 1 cut(s) 183
Bme1390I CCNGG 2 cut(s) 300, 312
BmrFI CCNGG 2 cut(s) 300, 312
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 2 cut(s) 158, 268
BmtI GCTAGC 2 cut(s) 11, 35
BmuI ACTGGG 1 cut(s) 237
BpuMI CCSGG 2 cut(s) 300, 312
BsaAI YACGTR 1 cut(s) 110
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 227, 317
Bse1I ACTGG 2 cut(s) 179, 232
BseLI CCNNNNNNNGG 3 cut(s) 76, 227, 317
BseNI ACTGG 2 cut(s) 179, 232
BseSI GKGCMC 3 cut(s) 107, 119, 343
BseXI GCAGC 2 cut(s) 158, 184
BshFI GGCC 3 cut(s) 157, 289, 321
BsiHKAI GWGCWC 3 cut(s) 107, 119, 343
BsiSI CCGG 3 cut(s) 286, 300, 312
BslFI GGGAC 1 cut(s) 294
BslI CCNNNNNNNGG 3 cut(s) 76, 227, 317
BsmFI GGGAC 1 cut(s) 294
BsnI GGCC 3 cut(s) 157, 289, 321
Bsp1286I GDGCHC 3 cut(s) 107, 119, 343
BspANI GGCC 3 cut(s) 157, 289, 321
BspHI TCATGA 1 cut(s) 24
BspMAI CTGCAG 1 cut(s) 174
BspMI ACCTGC 1 cut(s) 229
BspOI GCTAGC 2 cut(s) 11, 35
BsrI ACTGG 2 cut(s) 179, 232
BssSI CACGAG 1 cut(s) 43
Bst2BI CACGAG 1 cut(s) 43
BstBAI YACGTR 1 cut(s) 110
BstC8I GCNNGC 3 cut(s) 9, 33, 209
BstHHI GCGC 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 298, 310
BstSFI CTRYAG 1 cut(s) 170
BstSLI GKGCMC 3 cut(s) 107, 119, 343
BstV1I GCAGC 2 cut(s) 158, 184
BsuRI GGCC 3 cut(s) 157, 289, 321
BtsIMutI CAGTG 1 cut(s) 225
BveI ACCTGC 1 cut(s) 229
Cac8I GCNNGC 3 cut(s) 9, 33, 209
CciI TCATGA 1 cut(s) 24
CfoI GCGC 1 cut(s) 82
CseI GACGC 2 cut(s) 13, 37
Csp6I GTAC 2 cut(s) 87, 182
CviAII CATG 3 cut(s) 25, 63, 76
CviQI GTAC 2 cut(s) 87, 182
DraIII CACNNNGTG 1 cut(s) 338
EaeI YGGCCR 2 cut(s) 287, 319
Eco57I CTGAAG 1 cut(s) 255
Eco72I CACGTG 1 cut(s) 110
FaeI CATG 3 cut(s) 28, 66, 79
FaiI YATR 7 cut(s) 26, 64, 77, 165, 167, 306, 352
FalI AAGNNNNNCTT 2 cut(s) 116, 148
FaqI GGGAC 1 cut(s) 294
FatI CATG 3 cut(s) 24, 62, 75
Fnu4HI GCNGC 2 cut(s) 147, 173
Fsp4HI GCNGC 2 cut(s) 147, 173
FspBI CTAG 3 cut(s) 8, 32, 336
GlaI GCGC 1 cut(s) 81
GluI GCNGC 2 cut(s) 147, 173
HaeIII GGCC 3 cut(s) 157, 289, 321
HapII CCGG 3 cut(s) 286, 300, 312
HgaI GACGC 2 cut(s) 13, 37
HhaI GCGC 1 cut(s) 82
Hin1II CATG 3 cut(s) 28, 66, 79
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 1 cut(s) 266
HpaII CCGG 3 cut(s) 286, 300, 312
Hpy166II GTNNAC 3 cut(s) 105, 117, 341
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 3 cut(s) 105, 117, 341
HpyAV CCTTC 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 4 cut(s) 105, 117, 172, 341
HpySE526I ACGT 1 cut(s) 109
Hsp92II CATG 3 cut(s) 28, 66, 79
HspAI GCGC 1 cut(s) 80
LpnPI CCDG 8 cut(s) 68, 192, 213, 234, 248, 299, 313, 325
Lsp1109I GCAGC 2 cut(s) 158, 184
LweI GCATC 2 cut(s) 158, 268
MaeI CTAG 3 cut(s) 8, 32, 336
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 235
MboII GAAGA 2 cut(s) 29, 261
MhlI GDGCHC 3 cut(s) 107, 119, 343
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 1 cut(s) 52
MluNI TGGCCA 1 cut(s) 321
MnlI CCTC 1 cut(s) 354
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 112
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 3 cut(s) 286, 300, 312
MspR9I CCNGG 2 cut(s) 300, 312
NciI CCSGG 2 cut(s) 300, 312
NheI GCTAGC 2 cut(s) 7, 31
NlaIII CATG 3 cut(s) 28, 66, 79
OliI CACNNNNGTG 1 cut(s) 112
PagI TCATGA 1 cut(s) 24
PaqCI CACCTGC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 76
PkrI GCNGC 2 cut(s) 148, 174
PmaCI CACGTG 1 cut(s) 110
PmlI CACGTG 1 cut(s) 110
Ppu21I YACGTR 1 cut(s) 110
PspCI CACGTG 1 cut(s) 110
PstI CTGCAG 1 cut(s) 174
PvuII CAGCTG 1 cut(s) 275
RsaI GTAC 2 cut(s) 88, 183
RsaNI GTAC 2 cut(s) 87, 182
RseI CAYNNNNRTG 1 cut(s) 112
SatI GCNGC 2 cut(s) 147, 173
ScaI AGTACT 1 cut(s) 183
ScrFI CCNGG 2 cut(s) 300, 312
SduI GDGCHC 3 cut(s) 107, 119, 343
SetI ASST 9 cut(s) 13, 37, 94, 112, 223, 258, 277, 337, 346
SfaNI GCATC 2 cut(s) 158, 268
SfcI CTRYAG 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 112
Sse9I AATT 1 cut(s) 52
SspMI CTAG 3 cut(s) 8, 32, 336
StyD4I CCNGG 2 cut(s) 298, 310
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 203
TasI AATT 1 cut(s) 52
TatI WGTACW 1 cut(s) 181
TfiI GAWTC 1 cut(s) 266
TscAI CASTG 1 cut(s) 232
TseI GCWGC 2 cut(s) 146, 172
TspRI CASTG 1 cut(s) 232
Van91I CCANNNNNTGG 1 cut(s) 76
VneI GTGCAC 3 cut(s) 103, 115, 339
XapI RAATTY 1 cut(s) 52
XspI CTAG 3 cut(s) 8, 32, 336
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.