FvH4_5g26190

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0018850
Physical Location & Seq
Reverse (-)
17661818 .. 17663761
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26190.t1

Sequence Viewer

Length: 843 bp
ATGGAGATTGAGTCGTTTTGGGCAGACTGGAGGGATTTGAATTTTAGGGATACTTGGTTGTATGAAATCTGGTTTCAGTTGAATTTCTATTCTCTATGGTTTGGTAAATTTGGTTCGAATTTACTGAAACTGGTCAACTTAGAGTCTGAAACTGGGGTGGTGGTGGACCTCTTCACCACCGGAGCTGCTTTAGGGTACTGCAAGAATGGGACTAGCTGTAGATTCTTGCATGGTGGTGGACTTGGAGACTTGGGTTCAGATGGTGCTCAACTTGTTGGGTCACCAAGCAAGCTTGATATGATGGACCAGTCATGCCATGAAGCGCTTCTGAGATCCAAGACTCCTCAACAGCAAAGACTGGCTGCAGCTTCCCAGCTTATGGCCTCGGCCAACTCTTTTCCTTACTCATCTAAGTGCATGAACTTCCTTCTTCAACAACAACAAACTGATGCGCAGAGTCGATCTCCTCGGTTGGAAAGAAACGAGTTTCCGATGATGAATGGTGGCGCTGGGATGGTGAACCCAGCCTCAAGGCAGATATACTTGACTTTACCAGCTGATAGCACTTTCAGAGAAGAAGACGTGTCAAATTACTTCAGCATTTATGGATCTGTTCAAGATGTGAGAATTCCATACCAGCAGAAGAGGATGTTTGGTTTTGTTACATTTGTGTACTCAGATACTGTGAAGCTTATTTTGGCAAAAGGGAACCCTCATTTTGTGTGTGATGCTAGTGCTGGTCAAGCCTTACAAGGAGAAGGGCAAAGAAGCAACAAGGGGAAAGAGGAGATTTGTCGCCCTGTGGCACACTTTGTCCAATATCCTGATTTAACATATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 Torus zf-CCCH

Protein Analysis

281

Amino Acids

31.47

Weight (kDa)

5.63

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018850)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g26190
rosa_laevigata RLG00000000752 RLG00000020235
rosa_multiflora Rmu_sc0003317.1_g000025
rosa_roxburghii Rroxscaffold_6G00409110
rosa_samantha Rh2AG454800 Rh2BG467200 Rh2CG442000 Rh2DG476100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 453
AccB7I CCANNNNNTGG 1 cut(s) 379
AclWI GGATC 2 cut(s) 327, 616
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 5 cut(s) 40, 82, 107, 118, 627
AcuI CTGAAG 1 cut(s) 580
AfaI GTAC 2 cut(s) 197, 674
AfeI AGCGCT 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 379
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 4 cut(s) 40, 82, 434, 617
AjiI CACGTC 1 cut(s) 583
AjuI GAANNNNNNNTTGG 2 cut(s) 680, 712
AluBI AGCT 7 cut(s) 185, 216, 292, 368, 376, 557, 691
AluI AGCT 7 cut(s) 185, 216, 292, 368, 376, 557, 691
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 2 cut(s) 327, 616
AlwNI CAGNNNCTG 1 cut(s) 683
Aor51HI AGCGCT 1 cut(s) 324
AoxI GGCC 2 cut(s) 381, 387
ApeKI GCWGC 3 cut(s) 185, 362, 365
ApoI RAATTY 5 cut(s) 40, 82, 107, 118, 627
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 3 cut(s) 325, 454, 509
AspS9I GGNCC 2 cut(s) 166, 304
AsuHPI GGTGA 3 cut(s) 166, 273, 529
AsuII TTCGAA 1 cut(s) 116
AvaII GGWCC 2 cut(s) 166, 304
BbsI GAAGAC 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 3 cut(s) 172, 349, 377
BccI CCATC 3 cut(s) 254, 295, 508
BciVI GTATCC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 2 cut(s) 213, 732
BfmI CTRYAG 2 cut(s) 217, 363
BfoI RGCGCY 2 cut(s) 326, 510
BfuI GTATCC 1 cut(s) 43
BisI GCNGC 3 cut(s) 186, 363, 366
BlsI GCNGC 3 cut(s) 187, 364, 367
Bme18I GGWCC 2 cut(s) 166, 304
BmgBI CACGTC 1 cut(s) 583
BmgT120I GGNCC 2 cut(s) 166, 304
BmiI GGNNCC 1 cut(s) 710
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 439, 718
BmuI ACTGGG 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 585
BplI GAGNNNNNCTC 2 cut(s) 448, 480
BpmI CTGGAG 1 cut(s) 49
Bpu14I TTCGAA 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 514
BsaJI CCNNGG 2 cut(s) 384, 467
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 379
Bse1I ACTGG 5 cut(s) 32, 135, 157, 307, 363
BseDI CCNNGG 2 cut(s) 384, 467
BseGI GGATG 2 cut(s) 519, 654
BseLI CCNNNNNNNGG 1 cut(s) 379
BseMII CTCAG 2 cut(s) 320, 690
BseNI ACTGG 5 cut(s) 32, 135, 157, 307, 363
BseRI GAGGAG 3 cut(s) 333, 456, 800
BseXI GCAGC 3 cut(s) 172, 349, 377
BseYI CCCAGC 3 cut(s) 372, 509, 523
BshFI GGCC 2 cut(s) 383, 389
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 379
BsmAI GTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 2 cut(s) 383, 389
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 3 cut(s) 332, 461, 608
BspANI GGCC 2 cut(s) 383, 389
BspCNI CTCAG 2 cut(s) 321, 689
BspLI GGNNCC 1 cut(s) 710
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 2 cut(s) 327, 616
BspT104I TTCGAA 1 cut(s) 116
BsrI ACTGG 5 cut(s) 32, 135, 157, 307, 363
BssECI CCNNGG 2 cut(s) 384, 467
BssMI GATC 3 cut(s) 332, 461, 608
Bst4CI ACNGT 1 cut(s) 685
Bst6I CTCTTC 2 cut(s) 176, 638
BstBI TTCGAA 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 4 cut(s) 139, 329, 411, 676
BstEII GGTNACC 1 cut(s) 279
BstF5I GGATG 2 cut(s) 519, 654
BstH2I RGCGCY 2 cut(s) 326, 510
BstHHI GCGC 3 cut(s) 325, 454, 509
BstKTI GATC 3 cut(s) 335, 464, 611
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 3 cut(s) 332, 461, 608
BstMWI GCNNNNNNNGC 1 cut(s) 743
BstPI GGTNACC 1 cut(s) 279
BstSFI CTRYAG 2 cut(s) 217, 363
BstV1I GCAGC 3 cut(s) 172, 349, 377
BstV2I GAAGAC 1 cut(s) 585
BstX2I RGATCY 2 cut(s) 332, 608
BstYI RGATCY 2 cut(s) 332, 608
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 2 cut(s) 383, 389
BtrI CACGTC 1 cut(s) 583
BtsCI GGATG 2 cut(s) 519, 654
Cac8I GCNNGC 1 cut(s) 290
CaiI CAGNNNCTG 1 cut(s) 683
CfoI GCGC 3 cut(s) 325, 454, 509
Cfr13I GGNCC 2 cut(s) 166, 304
Csp6I GTAC 2 cut(s) 196, 673
CviAII CATG 4 cut(s) 230, 312, 317, 418
CviQI GTAC 2 cut(s) 196, 673
DdeI CTNAG 4 cut(s) 139, 329, 411, 676
DpnI GATC 3 cut(s) 334, 463, 610
DpnII GATC 3 cut(s) 332, 461, 608
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 2 cut(s) 176, 638
EarI CTCTTC 2 cut(s) 176, 638
Eco47I GGWCC 2 cut(s) 166, 304
Eco47III AGCGCT 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 580
Eco91I GGTNACC 1 cut(s) 279
EcoO65I GGTNACC 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 627
FaeI CATG 4 cut(s) 233, 315, 320, 421
FaqI GGGAC 1 cut(s) 223
FatI CATG 4 cut(s) 229, 311, 316, 417
FauNDI CATATG 1 cut(s) 835
Fnu4HI GCNGC 3 cut(s) 186, 363, 366
FokI GGATG 2 cut(s) 526, 661
Fsp4HI GCNGC 3 cut(s) 186, 363, 366
FspBI CTAG 2 cut(s) 213, 732
FspI TGCGCA 1 cut(s) 453
GlaI GCGC 3 cut(s) 324, 453, 508
GluI GCNGC 3 cut(s) 186, 363, 366
GsaI CCCAGC 3 cut(s) 376, 513, 527
GsuI CTGGAG 1 cut(s) 49
HaeII RGCGCY 2 cut(s) 326, 510
HaeIII GGCC 2 cut(s) 383, 389
HapII CCGG 1 cut(s) 180
HhaI GCGC 3 cut(s) 325, 454, 509
Hin1II CATG 4 cut(s) 233, 315, 320, 421
Hin6I GCGC 3 cut(s) 323, 452, 507
HinP1I GCGC 3 cut(s) 323, 452, 507
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 2 cut(s) 290, 689
HinfI GANTC 5 cut(s) 11, 143, 222, 340, 457
HpaII CCGG 1 cut(s) 180
HphI GGTGA 3 cut(s) 166, 273, 529
Hpy166II GTNNAC 5 cut(s) 136, 166, 239, 520, 673
Hpy188I TCNGA 6 cut(s) 148, 259, 330, 492, 572, 679
Hpy188III TCNNGA 2 cut(s) 617, 824
Hpy8I GTNNAC 5 cut(s) 136, 166, 239, 520, 673
HpyAV CCTTC 2 cut(s) 437, 752
HpyCH4III ACNGT 1 cut(s) 685
HpyCH4IV ACGT 1 cut(s) 582
HpyCH4V TGCA 4 cut(s) 201, 229, 365, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 743
HpyF3I CTNAG 4 cut(s) 139, 329, 411, 676
HpySE526I ACGT 1 cut(s) 582
Hsp92II CATG 4 cut(s) 233, 315, 320, 421
HspAI GCGC 3 cut(s) 323, 452, 507
Kzo9I GATC 3 cut(s) 332, 461, 608
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 3 cut(s) 172, 349, 377
LweI GCATC 2 cut(s) 439, 718
MaeI CTAG 2 cut(s) 213, 732
MaeII ACGT 1 cut(s) 582
MaeIII GTNAC 2 cut(s) 279, 661
MalI GATC 3 cut(s) 334, 463, 610
MboI GATC 3 cut(s) 332, 461, 608
MboII GAAGA 5 cut(s) 163, 422, 587, 590, 655
MflI RGATCY 2 cut(s) 332, 608
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 6 cut(s) 40, 82, 107, 118, 589, 627
MlyI GAGTC 4 cut(s) 20, 152, 334, 466
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 9 cut(s) 24, 179, 354, 394, 477, 538, 639, 723, 778
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 2 cut(s) 830, 841
MslI CAYNNNNRTG 2 cut(s) 234, 412
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 743
NdeI CATATG 1 cut(s) 835
NdeII GATC 3 cut(s) 332, 461, 608
NlaIII CATG 4 cut(s) 233, 315, 320, 421
NlaIV GGNNCC 1 cut(s) 710
NmeAIII GCCGAG 1 cut(s) 365
NmuCI GTSAC 1 cut(s) 279
NsbI TGCGCA 1 cut(s) 453
NspV TTCGAA 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 222
PflMI CCANNNNNTGG 1 cut(s) 379
PkrI GCNGC 3 cut(s) 187, 364, 367
PleI GAGTC 4 cut(s) 19, 151, 334, 465
PpsI GAGTC 4 cut(s) 19, 151, 334, 465
PspEI GGTNACC 1 cut(s) 279
PspFI CCCAGC 3 cut(s) 372, 509, 523
PspN4I GGNNCC 1 cut(s) 710
PspPI GGNCC 2 cut(s) 166, 304
PsrI GAACNNNNNNTAC 2 cut(s) 97, 129
PstI CTGCAG 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 683
PsuI RGATCY 2 cut(s) 332, 608
PvuII CAGCTG 1 cut(s) 557
RsaI GTAC 2 cut(s) 197, 674
RsaNI GTAC 2 cut(s) 196, 673
RseI CAYNNNNRTG 2 cut(s) 234, 412
SaqAI TTAA 2 cut(s) 830, 841
SatI GCNGC 3 cut(s) 186, 363, 366
Sau3AI GATC 3 cut(s) 332, 461, 608
Sau96I GGNCC 2 cut(s) 166, 304
SchI GAGTC 4 cut(s) 20, 152, 334, 466
SduI GDGCHC 1 cut(s) 268
SetI ASST 9 cut(s) 171, 187, 218, 294, 370, 378, 559, 585, 693
SfaNI GCATC 2 cut(s) 439, 718
SfcI CTRYAG 2 cut(s) 217, 363
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 2 cut(s) 166, 304
SmiMI CAYNNNNRTG 2 cut(s) 234, 412
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 6 cut(s) 40, 82, 107, 118, 589, 627
SspMI CTAG 2 cut(s) 213, 732
TaaI ACNGT 1 cut(s) 685
TaiI ACGT 1 cut(s) 585
TaqI TCGA 2 cut(s) 116, 460
TasI AATT 6 cut(s) 40, 82, 107, 118, 589, 627
TatI WGTACW 1 cut(s) 672
TfiI GAWTC 1 cut(s) 222
Tru1I TTAA 2 cut(s) 830, 841
Tru9I TTAA 2 cut(s) 830, 841
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 3 cut(s) 185, 362, 365
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 4 cut(s) 78, 333, 434, 512
Van91I CCANNNNNTGG 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 166, 304
XapI RAATTY 5 cut(s) 40, 82, 107, 118, 627
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 2 cut(s) 213, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.