Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018850

Physical Location & Seq

Genomic Coordinates Reverse (-)

4960384 .. 4961218

Gene Structure 835 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000752

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCCGTGGAAAGGGTGGCCGTCGGAGATGGTGGCGGTAGATTCTGGGTTCCTGAATCCCATTTCTGTTAGGATTTCTTTCATGTTCTTCTTTCATCTTCATCGCCAGAGCTGCTCCATTAGTGATATGTGCTTGGAAGACCCGAACTCTGGGTTCGGGTGGAAGCCCTGTTTGTATTATGCTAGAGGGTACAAGAATGGAACTAGCTGTAGATTCTTACATGGTGGAATTGGGGACTTGGGTTCAGATGGTGCTCCACTTGTTGGGTCACCCAGCAAGCTTGAGATGATGGACCAGTCATGCCATAAAGCACTTCTTAGATCCAAGTCTGCTCAACAGCAAAGACTGGCTGCAGCTTCCCAGCTAATGGCCTCAGCCAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 Torus zf-CCCH

Protein Analysis

129

Amino Acids

14.04

Weight (kDa)

8.68

Isoelectric Point (pI)

55.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018850)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g26190
rosa_laevigata	RLG00000000752 RLG00000020235
rosa_multiflora	Rmu_sc0003317.1_g000025
rosa_roxburghii	Rroxscaffold_6G00409110
rosa_samantha	Rh2AG454800 Rh2BG467200 Rh2CG442000 Rh2DG476100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	263, 367
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	17
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	4 cut(s)	11, 149, 263, 367
AluBI	AGCT	5 cut(s)	111, 207, 280, 356, 364
AluI	AGCT	5 cut(s)	111, 207, 280, 356, 364
Alw21I	GWGCWC	1 cut(s)	256
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	2 cut(s)	17, 369
ApeKI	GCWGC	3 cut(s)	111, 350, 353
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	256
BbvCI	CCTCAGC	1 cut(s)	373
BbvI	GCAGC	3 cut(s)	98, 337, 365
BccI	CCATC	3 cut(s)	22, 242, 283
BceAI	ACGGC	1 cut(s)	4
BfaI	CTAG	2 cut(s)	183, 204
BfmI	CTRYAG	2 cut(s)	208, 351
BisI	GCNGC	3 cut(s)	112, 351, 354
BlsI	GCNGC	3 cut(s)	113, 352, 355
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	373
BpuEI	CTTGAG	1 cut(s)	302
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 149, 263, 367
Bse1I	ACTGG	2 cut(s)	295, 351
BseDI	CCNNGG	1 cut(s)	5
BseLI	CCNNNNNNNGG	4 cut(s)	11, 149, 263, 367
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	295, 351
BseXI	GCAGC	3 cut(s)	98, 337, 365
BseYI	CCCAGC	2 cut(s)	272, 360
BshFI	GGCC	2 cut(s)	19, 371
BsiHKAI	GWGCWC	1 cut(s)	256
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	4 cut(s)	11, 149, 263, 367
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	2 cut(s)	19, 371
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	320
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	19, 371
BspCNI	CTCAG	1 cut(s)	386
BspLI	GGNNCC	1 cut(s)	50
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	295, 351
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	317, 373
BstDSI	CCRYGG	1 cut(s)	5
BstEII	GGTNACC	1 cut(s)	267
BstKTI	GATC	1 cut(s)	323
BstMBI	GATC	1 cut(s)	320
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstPI	GGTNACC	1 cut(s)	267
BstSFI	CTRYAG	2 cut(s)	208, 351
BstV1I	GCAGC	3 cut(s)	98, 337, 365
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	19, 371
BtgI	CCRYGG	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	278
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	3 cut(s)	82, 221, 300
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	317, 373
DpnI	GATC	1 cut(s)	322
DpnII	GATC	1 cut(s)	320
EaeI	YGGCCR	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	292
Eco91I	GGTNACC	1 cut(s)	267
EcoO65I	GGTNACC	1 cut(s)	267
FaeI	CATG	3 cut(s)	85, 224, 303
FaiI	YATR	6 cut(s)	83, 128, 180, 222, 301, 306
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	81, 220, 299
Fnu4HI	GCNGC	3 cut(s)	112, 351, 354
Fsp4HI	GCNGC	3 cut(s)	112, 351, 354
FspBI	CTAG	2 cut(s)	183, 204
GluI	GCNGC	3 cut(s)	112, 351, 354
GsaI	CCCAGC	2 cut(s)	276, 364
HaeIII	GGCC	2 cut(s)	19, 371
Hin1II	CATG	3 cut(s)	85, 224, 303
HindIII	AAGCTT	1 cut(s)	278
HinfI	GANTC	3 cut(s)	41, 55, 213
HphI	GGTGA	1 cut(s)	261
Hpy188I	TCNGA	2 cut(s)	25, 247
Hpy188III	TCNNGA	1 cut(s)	52
Hpy99I	CGWCG	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	317, 373
Hsp92II	CATG	3 cut(s)	85, 224, 303
Kzo9I	GATC	1 cut(s)	320
LmnI	GCTCC	2 cut(s)	119, 259
LpnPI	CCDG	9 cut(s)	30, 65, 119, 135, 181, 286, 308, 332, 374
Lsp1109I	GCAGC	3 cut(s)	98, 337, 365
MaeI	CTAG	2 cut(s)	183, 204
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	1 cut(s)	322
MboI	GATC	1 cut(s)	320
MboII	GAAGA	3 cut(s)	79, 89, 149
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	1 cut(s)	228
MnlI	CCTC	2 cut(s)	179, 382
MseI	TTAA	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	111
NdeII	GATC	1 cut(s)	320
NlaIII	CATG	3 cut(s)	85, 224, 303
NlaIV	GGNNCC	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	41, 55, 213
PflMI	CCANNNNNTGG	2 cut(s)	263, 367
PkrI	GCNGC	3 cut(s)	113, 352, 355
PspEI	GGTNACC	1 cut(s)	267
PspFI	CCCAGC	2 cut(s)	272, 360
PspN4I	GGNNCC	1 cut(s)	50
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	320
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	3 cut(s)	112, 351, 354
Sau3AI	GATC	1 cut(s)	320
Sau96I	GGNCC	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	5 cut(s)	113, 209, 282, 358, 366
SfcI	CTRYAG	2 cut(s)	208, 351
SinI	GGWCC	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	1 cut(s)	228
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	2 cut(s)	183, 204
TasI	AATT	1 cut(s)	228
TfiI	GAWTC	3 cut(s)	41, 55, 213
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	3 cut(s)	111, 350, 353
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	3 cut(s)	70, 83, 89
Van91I	CCANNNNNTGG	2 cut(s)	263, 367
VpaK11BI	GGWCC	1 cut(s)	292
XspI	CTAG	2 cut(s)	183, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.