Rroxscaffold_6G00409110

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018850
Physical Location & Seq
Forward (+)
31641897 .. 31644434
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00409110.1

Sequence Viewer

Length: 675 bp
ATGGCTTTGCTCCTCGATGGTCGGTTCGACGAGATCGGTTTGGTGTCGCAGACTCGGAGGTTGGCTGGTGGAGGCTTGCTTGTGGAGATGCATTGTGGATCCGATCGGACGAGATCGATCCGGATTGGATCTCATAGCCTCGGATCCAATACGGGACGGGATTTGTTTGGTTGGGGCGGTGCTTACCCATGGAGCGACCGGGATGGCGGTAGGTTCATGGCGGTCCCGCAATTGCAAAGGGGCGGTGTAGTGAGGGGTCCGGCGGCGGTGGCCGTGGTGGGGTTGGGCCGAGTTTGGCCGGCGGCCCGTATTCTTCCTCTCGTCCCGGGTATGTCTCGCTATTGGCGTGTAATAAGTCCCTACATGAATCTTGTAGGGTTAGTCGGGCTAAATGCCCGTGTGTGCACTCTCGGTGCCTTGTCCGACCTAGCGAGGTACCGCAAGAATGGAACTAGCCGGAGATTCTTGCGTGGTGGAATTGGGGACTTGGGTTCAGATGGTGCTCCACTTGTTTGGTCACCAAGCAAGCTTGAGATGATGGACCAATCATGCCATGAAGTACTTCTCGGATGCAAGTCTTACTTTCAAACTGATATTTTCATTGTTCCCGGTGTTATATCCGTGGCACACTTCCACAAATCTGCTACCTTCAAATGGAAGGCCATAATCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 Torus zf-CCCH

Protein Analysis

224

Amino Acids

24.28

Weight (kDa)

10.22

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018850)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g26190
rosa_laevigata RLG00000000752 RLG00000020235
rosa_multiflora Rmu_sc0003317.1_g000025
rosa_roxburghii Rroxscaffold_6G00409110
rosa_samantha Rh2AG454800 Rh2BG467200 Rh2CG442000 Rh2DG476100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 435
AccB1I GGYRCC 2 cut(s) 413, 435
AccIII TCCGGA 1 cut(s) 120
AciI CCGC 9 cut(s) 177, 207, 221, 227, 243, 263, 266, 302, 439
AclWI GGATC 6 cut(s) 93, 106, 112, 136, 138, 151
AcoI YGGCCR 2 cut(s) 270, 296
AfaI GTAC 2 cut(s) 437, 561
AfiI CCNNNNNNNGG 2 cut(s) 279, 654
AgsI TTSAA 2 cut(s) 587, 652
AluBI AGCT 1 cut(s) 529
AluI AGCT 1 cut(s) 529
Alw21I GWGCWC 2 cut(s) 407, 505
Alw26I GTCTC 1 cut(s) 339
Alw44I GTGCAC 1 cut(s) 403
AlwI GGATC 6 cut(s) 93, 106, 112, 136, 138, 151
Ama87I CYCGRG 1 cut(s) 325
Aor13HI TCCGGA 1 cut(s) 120
AoxI GGCC 5 cut(s) 270, 286, 296, 303, 660
ApaLI GTGCAC 1 cut(s) 403
Asp700I GAANNNNTTC 1 cut(s) 561
Asp718I GGTACC 1 cut(s) 435
AspS9I GGNCC 5 cut(s) 223, 257, 286, 304, 541
AsuC2I CCSGG 4 cut(s) 200, 326, 327, 609
AsuHPI GGTGA 1 cut(s) 510
AvaI CYCGRG 1 cut(s) 325
AvaII GGWCC 3 cut(s) 223, 257, 541
BaeGI GKGCMC 1 cut(s) 407
BamHI GGATCC 2 cut(s) 98, 143
BanI GGYRCC 2 cut(s) 413, 435
Bbv12I GWGCWC 2 cut(s) 407, 505
BccI CCATC 4 cut(s) 11, 197, 491, 532
BceAI ACGGC 1 cut(s) 257
BcnI CCSGG 4 cut(s) 200, 326, 327, 609
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 2 cut(s) 428, 453
BisI GCNGC 2 cut(s) 264, 303
BlsI GCNGC 2 cut(s) 265, 304
BmcAI AGTACT 1 cut(s) 561
Bme1390I CCNGG 4 cut(s) 200, 326, 327, 609
Bme18I GGWCC 3 cut(s) 223, 257, 541
BmeT110I CYCGRG 1 cut(s) 325
BmgT120I GGNCC 5 cut(s) 223, 257, 286, 304, 541
BmiI GGNNCC 6 cut(s) 100, 145, 225, 258, 415, 437
BmrFI CCNGG 4 cut(s) 200, 326, 327, 609
BmsI GCATC 2 cut(s) 78, 560
BpuEI CTTGAG 1 cut(s) 551
BpuMI CCSGG 4 cut(s) 200, 326, 327, 609
Bsa29I ATCGAT 1 cut(s) 116
BsaJI CCNNGG 5 cut(s) 139, 188, 273, 325, 621
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 654
Bse118I RCCGGY 1 cut(s) 298
BseAI TCCGGA 1 cut(s) 120
BseCI ATCGAT 1 cut(s) 116
BseDI CCNNGG 5 cut(s) 139, 188, 273, 325, 621
BseGI GGATG 2 cut(s) 208, 575
BseLI CCNNNNNNNGG 2 cut(s) 279, 654
BseSI GKGCMC 1 cut(s) 407
Bsh1285I CGRYCG 2 cut(s) 106, 199
BshFI GGCC 5 cut(s) 272, 288, 298, 305, 662
BshNI GGYRCC 2 cut(s) 413, 435
BshVI ATCGAT 1 cut(s) 116
BsiEI CGRYCG 2 cut(s) 106, 199
BsiHKAI GWGCWC 2 cut(s) 407, 505
BsiHKCI CYCGRG 1 cut(s) 325
BsiSI CCGG 7 cut(s) 121, 199, 260, 299, 326, 457, 609
BslFI GGGAC 5 cut(s) 168, 209, 308, 342, 497
BslI CCNNNNNNNGG 2 cut(s) 279, 654
BsmAI GTCTC 1 cut(s) 339
BsmFI GGGAC 5 cut(s) 168, 209, 308, 342, 497
BsnI GGCC 5 cut(s) 272, 288, 298, 305, 662
BsoBI CYCGRG 1 cut(s) 325
Bsp1286I GDGCHC 2 cut(s) 407, 505
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 7 cut(s) 33, 98, 103, 113, 117, 128, 143
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 9 cut(s) 177, 207, 221, 227, 243, 263, 266, 302, 439
BspANI GGCC 5 cut(s) 272, 288, 298, 305, 662
BspDI ATCGAT 1 cut(s) 116
BspEI TCCGGA 1 cut(s) 120
BspLI GGNNCC 6 cut(s) 100, 145, 225, 258, 415, 437
BspPI GGATC 6 cut(s) 93, 106, 112, 136, 138, 151
BspT107I GGYRCC 2 cut(s) 413, 435
BsrFI RCCGGY 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 5 cut(s) 139, 188, 273, 325, 621
BssMI GATC 7 cut(s) 33, 98, 103, 113, 117, 128, 143
BssT1I CCWWGG 1 cut(s) 188
BstC8I GCNNGC 3 cut(s) 77, 300, 527
BstDEI CTNAG 1 cut(s) 672
BstDSI CCRYGG 3 cut(s) 188, 273, 621
BstEII GGTNACC 1 cut(s) 516
BstF5I GGATG 2 cut(s) 208, 575
BstKTI GATC 7 cut(s) 36, 101, 106, 116, 120, 131, 146
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 7 cut(s) 33, 98, 103, 113, 117, 128, 143
BstMCI CGRYCG 2 cut(s) 106, 199
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstPI GGTNACC 1 cut(s) 516
BstSCI CCNGG 4 cut(s) 198, 324, 325, 607
BstSLI GKGCMC 1 cut(s) 407
BstX2I RGATCY 3 cut(s) 98, 128, 143
BstXI CCANNNNNNTGG 1 cut(s) 513
BstYI RGATCY 3 cut(s) 98, 128, 143
Bsu15I ATCGAT 1 cut(s) 116
BsuRI GGCC 5 cut(s) 272, 288, 298, 305, 662
BsuTUI ATCGAT 1 cut(s) 116
BtgI CCRYGG 3 cut(s) 188, 273, 621
BtsCI GGATG 2 cut(s) 208, 575
Cac8I GCNNGC 3 cut(s) 77, 300, 527
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 5 cut(s) 223, 257, 286, 304, 541
Cfr9I CCCGGG 1 cut(s) 325
ClaI ATCGAT 1 cut(s) 116
Csp6I GTAC 2 cut(s) 436, 560
CviAII CATG 5 cut(s) 189, 217, 364, 549, 554
CviQI GTAC 2 cut(s) 436, 560
DdeI CTNAG 1 cut(s) 672
DpnI GATC 7 cut(s) 35, 100, 105, 115, 119, 130, 145
DpnII GATC 7 cut(s) 33, 98, 103, 113, 117, 128, 143
EaeI YGGCCR 2 cut(s) 270, 296
Eco130I CCWWGG 1 cut(s) 188
Eco47I GGWCC 3 cut(s) 223, 257, 541
Eco88I CYCGRG 1 cut(s) 325
Eco91I GGTNACC 1 cut(s) 516
EcoO65I GGTNACC 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 188
EcoT22I ATGCAT 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 5 cut(s) 192, 220, 367, 552, 557
FaiI YATR 9 cut(s) 135, 190, 218, 332, 365, 550, 555, 617, 665
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 5 cut(s) 168, 209, 308, 342, 497
FatI CATG 5 cut(s) 188, 216, 363, 548, 553
FauI CCCGC 1 cut(s) 234
Fnu4HI GCNGC 2 cut(s) 264, 303
FokI GGATG 2 cut(s) 215, 582
Fsp4HI GCNGC 2 cut(s) 264, 303
FspBI CTAG 2 cut(s) 428, 453
GluI GCNGC 2 cut(s) 264, 303
HaeIII GGCC 5 cut(s) 272, 288, 298, 305, 662
HapII CCGG 7 cut(s) 121, 199, 260, 299, 326, 457, 609
Hin1II CATG 5 cut(s) 192, 220, 367, 552, 557
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 3 cut(s) 52, 367, 462
HpaII CCGG 7 cut(s) 121, 199, 260, 299, 326, 457, 609
HphI GGTGA 1 cut(s) 510
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 7 cut(s) 57, 103, 108, 143, 424, 496, 569
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 1 cut(s) 405
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 652, 658
HpyCH4V TGCA 4 cut(s) 91, 235, 405, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 672
Hsp92II CATG 5 cut(s) 192, 220, 367, 552, 557
Kpn2I TCCGGA 1 cut(s) 120
KpnI GGTACC 1 cut(s) 439
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Kzo9I GATC 7 cut(s) 33, 98, 103, 113, 117, 128, 143
LmnI GCTCC 3 cut(s) 15, 192, 508
LpnPI CCDG 8 cut(s) 51, 134, 212, 273, 312, 339, 470, 622
LweI GCATC 2 cut(s) 78, 560
MaeI CTAG 2 cut(s) 428, 453
MaeIII GTNAC 1 cut(s) 516
MalI GATC 7 cut(s) 35, 100, 105, 115, 119, 130, 145
MboI GATC 7 cut(s) 33, 98, 103, 113, 117, 128, 143
MboII GAAGA 1 cut(s) 305
MfeI CAATTG 1 cut(s) 230
MflI RGATCY 3 cut(s) 98, 128, 143
MhlI GDGCHC 2 cut(s) 407, 505
MluCI AATT 2 cut(s) 230, 477
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 7 cut(s) 23, 51, 65, 149, 246, 327, 426
Mph1103I ATGCAT 1 cut(s) 93
MroI TCCGGA 1 cut(s) 120
MroNI GCCGGC 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 561
MspI CCGG 7 cut(s) 121, 199, 260, 299, 326, 457, 609
MspR9I CCNGG 4 cut(s) 200, 326, 327, 609
MunI CAATTG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 269
NaeI GCCGGC 1 cut(s) 300
NciI CCSGG 4 cut(s) 200, 326, 327, 609
NcoI CCATGG 1 cut(s) 188
NdeII GATC 7 cut(s) 33, 98, 103, 113, 117, 128, 143
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 5 cut(s) 192, 220, 367, 552, 557
NlaIV GGNNCC 6 cut(s) 100, 145, 225, 258, 415, 437
NmeAIII GCCGAG 1 cut(s) 314
NmuCI GTSAC 1 cut(s) 516
NsiI ATGCAT 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PdiI GCCGGC 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 561
PfeI GAWTC 2 cut(s) 367, 462
PkrI GCNGC 2 cut(s) 265, 304
Ple19I CGATCG 1 cut(s) 106
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PspEI GGTNACC 1 cut(s) 516
PspN4I GGNNCC 6 cut(s) 100, 145, 225, 258, 415, 437
PspPI GGNCC 5 cut(s) 223, 257, 286, 304, 541
PsuI RGATCY 3 cut(s) 98, 128, 143
PvuI CGATCG 1 cut(s) 106
RsaI GTAC 2 cut(s) 437, 561
RsaNI GTAC 2 cut(s) 436, 560
SatI GCNGC 2 cut(s) 264, 303
Sau3AI GATC 7 cut(s) 33, 98, 103, 113, 117, 128, 143
Sau96I GGNCC 5 cut(s) 223, 257, 286, 304, 541
ScaI AGTACT 1 cut(s) 561
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 4 cut(s) 200, 326, 327, 609
SduI GDGCHC 2 cut(s) 407, 505
SetI ASST 6 cut(s) 62, 215, 429, 437, 531, 650
SfaNI GCATC 2 cut(s) 78, 560
SinI GGWCC 3 cut(s) 223, 257, 541
SmaI CCCGGG 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 2 cut(s) 230, 477
SsiI CCGC 9 cut(s) 177, 207, 221, 227, 243, 263, 266, 302, 439
SspMI CTAG 2 cut(s) 428, 453
StyD4I CCNGG 4 cut(s) 198, 324, 325, 607
StyI CCWWGG 1 cut(s) 188
TaqI TCGA 3 cut(s) 15, 27, 116
TasI AATT 2 cut(s) 230, 477
TatI WGTACW 1 cut(s) 559
TauI GCSGC 2 cut(s) 266, 305
TfiI GAWTC 2 cut(s) 367, 462
TseFI GTSAC 1 cut(s) 516
Tsp45I GTSAC 1 cut(s) 516
TspDTI ATGAA 4 cut(s) 205, 380, 570, 589
TspGWI ACGGA 1 cut(s) 610
TspMI CCCGGG 1 cut(s) 325
VneI GTGCAC 1 cut(s) 403
VpaK11BI GGWCC 3 cut(s) 223, 257, 541
XmaI CCCGGG 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 2 cut(s) 428, 453
ZrmI AGTACT 1 cut(s) 561
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.