RLG00000020235

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018850
Physical Location & Seq
Forward (+)
62704536 .. 62705494
959 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020235

Sequence Viewer

Length: 681 bp
ATGAGTCCGAAGGCCGTTGCCGGCGTCTACCCAAACTCGAAGTCTCTGTCAGCGACGCGAGTTGAAGGGTCGGGTTCGTTCACAGTGGCTTCTGTTTGCAGTATGAGCCTTGTCCGGTCTTGCAGTAGGAGCACAACCACTGACCTCCTGCGTCTTCTCTCTTTGACACACGTCGAGGTGCGAGCCTCTTCTGGCTCCACCACCGAGCCATCCTTCGCGCAAGATCTTGGTTTCGTTAGTGCTTTGATCCCACATGTTCTTGAAGGTTTGATCGAAATTGTAGATTTTGGGTTCTTGAATCCCATTTCGGTTAGGATTTCTTTCATGTTCTTCTTTCATCTTCATCGCCGGAGCTGCTCCGTCAGTAATGTGTGCTTGGAAGACCCGAATTCTGGGTTCGAGTGGAAGCCCGGATTGTATTATGCTAGAGGGTACTGCAAGAATGGAACTAGCTATAGATTCTTGCATGGTGGAATTGGGGACTTGGGTTCAAATGGTGCTCCACTTGTTGGGTCACCAAGCAAGCTTGAGATGATGGACCAGTCATGCCATGAAGTACTTCTCAGATCCAAGTCTTACTTTCAAACTGATATCTTCACTATTTCCAGTGTTATATTTGTAGCAGATCTGTGGAGTGTTATATTTGTGGCACACTTCCATAGATCTGCTACCTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 Torus zf-CCCH

Protein Analysis

227

Amino Acids

24.73

Weight (kDa)

8.24

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018850)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g26190
rosa_laevigata RLG00000000752 RLG00000020235
rosa_multiflora Rmu_sc0003317.1_g000025
rosa_roxburghii Rroxscaffold_6G00409110
rosa_samantha Rh2AG454800 Rh2BG467200 Rh2CG442000 Rh2DG476100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 509
AccI GTMKAC 1 cut(s) 27
AccII CGCG 2 cut(s) 58, 218
AclWI GGATC 2 cut(s) 241, 561
AcsI RAATTY 1 cut(s) 388
AcyI GRCGYC 1 cut(s) 24
AfaI GTAC 2 cut(s) 434, 558
AfiI CCNNNNNNNGG 2 cut(s) 392, 509
AflIII ACRYGT 2 cut(s) 169, 253
AgsI TTSAA 6 cut(s) 65, 263, 298, 492, 584, 676
AjiI CACGTC 1 cut(s) 172
AluBI AGCT 3 cut(s) 354, 453, 526
AluI AGCT 3 cut(s) 354, 453, 526
Alw21I GWGCWC 2 cut(s) 134, 502
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 2 cut(s) 241, 561
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 354
ApoI RAATTY 1 cut(s) 388
ArsI GACNNNNNNTTYG 4 cut(s) 26, 32, 58, 64
Asp700I GAANNNNTTC 1 cut(s) 558
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 538
AsuC2I CCSGG 1 cut(s) 411
AsuHPI GGTGA 1 cut(s) 507
AvaII GGWCC 1 cut(s) 538
BbsI GAAGAC 2 cut(s) 146, 387
Bbv12I GWGCWC 2 cut(s) 134, 502
BbvI GCAGC 1 cut(s) 341
BccI CCATC 2 cut(s) 217, 529
BcnI CCSGG 1 cut(s) 411
BcoDI GTCTC 1 cut(s) 48
BfaI CTAG 2 cut(s) 426, 450
BfmI CTRYAG 1 cut(s) 454
BglII AGATCT 3 cut(s) 223, 625, 662
BisI GCNGC 1 cut(s) 355
BlsI GCNGC 1 cut(s) 356
BmcAI AGTACT 1 cut(s) 558
Bme1390I CCNGG 1 cut(s) 411
Bme18I GGWCC 1 cut(s) 538
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 411
BoxI GACNNNNGTC 1 cut(s) 170
BpiI GAAGAC 2 cut(s) 146, 387
BpuEI CTTGAG 1 cut(s) 548
BpuMI CCSGG 1 cut(s) 411
BsaHI GRCGYC 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 2 cut(s) 392, 509
Bse118I RCCGGY 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 541, 606
BseGI GGATG 1 cut(s) 209
BseLI CCNNNNNNNGG 2 cut(s) 392, 509
BseMII CTCAG 1 cut(s) 577
BseNI ACTGG 2 cut(s) 541, 606
BseXI GCAGC 1 cut(s) 341
Bsh1236I CGCG 2 cut(s) 58, 218
BshFI GGCC 1 cut(s) 14
BsiHKAI GWGCWC 2 cut(s) 134, 502
BsiSI CCGG 4 cut(s) 21, 115, 349, 411
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 2 cut(s) 392, 509
BsmAI GTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 494
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 2 cut(s) 134, 502
Bsp143I GATC 6 cut(s) 223, 246, 270, 566, 625, 662
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 576
BspFNI CGCG 2 cut(s) 58, 218
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 2 cut(s) 241, 561
BsrFI RCCGGY 1 cut(s) 20
BsrI ACTGG 2 cut(s) 541, 606
BssAI RCCGGY 1 cut(s) 20
BssMI GATC 6 cut(s) 223, 246, 270, 566, 625, 662
BssNI GRCGYC 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 193
BstACI GRCGYC 1 cut(s) 24
BstC8I GCNNGC 3 cut(s) 22, 183, 524
BstDEI CTNAG 1 cut(s) 563
BstEII GGTNACC 1 cut(s) 513
BstF5I GGATG 1 cut(s) 209
BstFNI CGCG 2 cut(s) 58, 218
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 6 cut(s) 226, 249, 273, 569, 628, 665
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 6 cut(s) 223, 246, 270, 566, 625, 662
BstMWI GCNNNNNNNGC 3 cut(s) 105, 129, 354
BstNSI RCATGY 1 cut(s) 257
BstPAI GACNNNNGTC 1 cut(s) 170
BstPI GGTNACC 1 cut(s) 513
BstSCI CCNGG 1 cut(s) 409
BstSFI CTRYAG 1 cut(s) 454
BstUI CGCG 2 cut(s) 58, 218
BstV1I GCAGC 1 cut(s) 341
BstV2I GAAGAC 2 cut(s) 146, 387
BstX2I RGATCY 4 cut(s) 223, 566, 625, 662
BstYI RGATCY 4 cut(s) 223, 566, 625, 662
BsuRI GGCC 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 329
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 209
BtsIMutI CAGTG 3 cut(s) 90, 138, 613
Cac8I GCNNGC 3 cut(s) 22, 183, 524
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 538
CseI GACGC 3 cut(s) 13, 64, 140
Csp6I GTAC 2 cut(s) 433, 557
CviAII CATG 5 cut(s) 254, 325, 467, 546, 551
CviQI GTAC 2 cut(s) 433, 557
DdeI CTNAG 1 cut(s) 563
DpnI GATC 6 cut(s) 225, 248, 272, 568, 627, 664
DpnII GATC 6 cut(s) 223, 246, 270, 566, 625, 662
Eam1104I CTCTTC 1 cut(s) 193
EarI CTCTTC 1 cut(s) 193
Eco32I GATATC 1 cut(s) 592
Eco47I GGWCC 1 cut(s) 538
Eco91I GGTNACC 1 cut(s) 513
EcoO65I GGTNACC 1 cut(s) 513
EcoRI GAATTC 1 cut(s) 388
EcoRV GATATC 1 cut(s) 592
FaeI CATG 5 cut(s) 257, 328, 470, 549, 554
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FaqI GGGAC 1 cut(s) 494
FatI CATG 5 cut(s) 253, 324, 466, 545, 550
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 355
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 355
FspBI CTAG 2 cut(s) 426, 450
GlaI GCGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 355
HaeIII GGCC 1 cut(s) 14
HapII CCGG 4 cut(s) 21, 115, 349, 411
HgaI GACGC 3 cut(s) 13, 64, 140
HhaI GCGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 24
Hin1II CATG 5 cut(s) 257, 328, 470, 549, 554
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 524
HinfI GANTC 3 cut(s) 4, 298, 459
HpaII CCGG 4 cut(s) 21, 115, 349, 411
HphI GGTGA 1 cut(s) 507
Hpy166II GTNNAC 2 cut(s) 28, 81
Hpy188I TCNGA 2 cut(s) 9, 566
Hpy188III TCNNGA 2 cut(s) 260, 295
Hpy8I GTNNAC 2 cut(s) 28, 81
Hpy99I CGWCG 2 cut(s) 58, 176
HpyAV CCTTC 4 cut(s) 4, 59, 223, 257
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 4 cut(s) 99, 123, 438, 466
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 129, 354
HpyF3I CTNAG 1 cut(s) 563
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 24
Hsp92II CATG 5 cut(s) 257, 328, 470, 549, 554
HspAI GCGC 1 cut(s) 218
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 6 cut(s) 223, 246, 270, 566, 625, 662
LmnI GCTCC 5 cut(s) 129, 200, 351, 362, 505
LpnPI CCDG 9 cut(s) 34, 128, 161, 177, 362, 378, 424, 554, 619
Lsp1109I GCAGC 1 cut(s) 341
MaeI CTAG 2 cut(s) 426, 450
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 513
MalI GATC 6 cut(s) 225, 248, 272, 568, 627, 664
MboI GATC 6 cut(s) 223, 246, 270, 566, 625, 662
MboII GAAGA 6 cut(s) 146, 180, 322, 332, 392, 586
MflI RGATCY 4 cut(s) 223, 566, 625, 662
MhlI GDGCHC 2 cut(s) 134, 502
MluCI AATT 3 cut(s) 276, 388, 474
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 4 cut(s) 155, 169, 196, 422
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 558
MspI CCGG 4 cut(s) 21, 115, 349, 411
MspR9I CCNGG 1 cut(s) 411
MvnI CGCG 2 cut(s) 58, 218
MwoI GCNNNNNNNGC 3 cut(s) 105, 129, 354
NaeI GCCGGC 1 cut(s) 22
NciI CCSGG 1 cut(s) 411
NdeII GATC 6 cut(s) 223, 246, 270, 566, 625, 662
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 5 cut(s) 257, 328, 470, 549, 554
NlaIV GGNNCC 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 513
NspI RCATGY 1 cut(s) 257
PciI ACATGT 1 cut(s) 253
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 558
PfeI GAWTC 2 cut(s) 298, 459
PflMI CCANNNNNTGG 1 cut(s) 509
PkrI GCNGC 1 cut(s) 356
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PscI ACATGT 1 cut(s) 253
PshAI GACNNNNGTC 1 cut(s) 170
PspEI GGTNACC 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 538
PsuI RGATCY 4 cut(s) 223, 566, 625, 662
RsaI GTAC 2 cut(s) 434, 558
RsaNI GTAC 2 cut(s) 433, 557
SatI GCNGC 1 cut(s) 355
Sau3AI GATC 6 cut(s) 223, 246, 270, 566, 625, 662
Sau96I GGNCC 1 cut(s) 538
ScaI AGTACT 1 cut(s) 558
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 411
SduI GDGCHC 2 cut(s) 134, 502
SetI ASST 8 cut(s) 147, 174, 180, 268, 356, 455, 528, 674
SfcI CTRYAG 1 cut(s) 454
SinI GGWCC 1 cut(s) 538
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 3 cut(s) 276, 388, 474
SspMI CTAG 2 cut(s) 426, 450
StyD4I CCNGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 174
TaqI TCGA 4 cut(s) 38, 174, 273, 399
TasI AATT 3 cut(s) 276, 388, 474
TatI WGTACW 1 cut(s) 556
TfiI GAWTC 2 cut(s) 298, 459
TscAI CASTG 3 cut(s) 90, 145, 613
TseFI GTSAC 1 cut(s) 513
TseI GCWGC 1 cut(s) 354
Tsp45I GTSAC 1 cut(s) 513
TspDTI ATGAA 4 cut(s) 313, 326, 332, 567
TspGWI ACGGA 1 cut(s) 349
TspRI CASTG 3 cut(s) 90, 145, 613
Van91I CCANNNNNTGG 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 538
XapI RAATTY 1 cut(s) 388
XceI RCATGY 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 27
XmnI GAANNNNTTC 1 cut(s) 558
XspI CTAG 2 cut(s) 426, 450
ZrmI AGTACT 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.