Rh2DG476100

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018850
Physical Location & Seq
Forward (+)
68916925 .. 68917254
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG476100.1

Sequence Viewer

Length: 330 bp
ATGTTCTTCTTTCATCTTCATCGCCGGAGCTGCTCCGTCAGTAATGTGTGCTTGGAAGACCCGAATTCTGGGTTCGAGTGGAAGCCCTGTTTGTATTATGCTAAAGGGTACTGCAAGAATGGAACTAGCTGTAGATTCTTGCATGGTGGAATTGGGGACTTGGGTTCAGATGGTGCTCCACTTGTTGGGTCACCAAGCAAACTTGAGATGATGGACCGGTCATGCCATGAAGTACTTCTCAGATCCAAGTCTTACTTTCAAACTGATATCTTCACTGTTCCCAGTGTTATATTTGTGGCACACTTCCACAGATCTGCTACCTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 Torus zf-CCCH

Protein Analysis

109

Amino Acids

12.3

Weight (kDa)

8.59

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 29 - 49 6.3e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4 PF18345 30 - 48 2.9e-06 Zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018850)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g26190
rosa_laevigata RLG00000000752 RLG00000020235
rosa_multiflora Rmu_sc0003317.1_g000025
rosa_roxburghii Rroxscaffold_6G00409110
rosa_samantha Rh2AG454800 Rh2BG467200 Rh2CG442000 Rh2DG476100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 185
AclWI GGATC 1 cut(s) 237
AcsI RAATTY 1 cut(s) 64
AfaI GTAC 2 cut(s) 110, 234
AfiI CCNNNNNNNGG 2 cut(s) 68, 185
AgeI ACCGGT 1 cut(s) 216
AgsI TTSAA 2 cut(s) 260, 325
AluBI AGCT 2 cut(s) 30, 129
AluI AGCT 2 cut(s) 30, 129
Alw21I GWGCWC 1 cut(s) 178
AlwI GGATC 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 64
AsiGI ACCGGT 1 cut(s) 216
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 183
AvaII GGWCC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 178
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 164, 205
BfaI CTAG 1 cut(s) 126
BfmI CTRYAG 1 cut(s) 130
BglII AGATCT 1 cut(s) 311
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 234
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmrI ACTGGG 1 cut(s) 276
BmuI ACTGGG 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 224
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 185
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 68, 185
BseMII CTCAG 1 cut(s) 253
BseNI ACTGG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 17
BshTI ACCGGT 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 2 cut(s) 25, 217
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 2 cut(s) 68, 185
BsmFI GGGAC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 2 cut(s) 242, 311
BspCNI CTCAG 1 cut(s) 252
BspPI GGATC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 1 cut(s) 282
BssAI RCCGGY 1 cut(s) 216
BssMI GATC 2 cut(s) 242, 311
Bst4CI ACNGT 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 239
BstEII GGTNACC 1 cut(s) 189
BstKTI GATC 2 cut(s) 245, 314
BstMBI GATC 2 cut(s) 242, 311
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstPI GGTNACC 1 cut(s) 189
BstSFI CTRYAG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 63
BstX2I RGATCY 2 cut(s) 242, 311
BstYI RGATCY 2 cut(s) 242, 311
BtgZI GCGATG 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 273, 289
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 109, 233
CspAI ACCGGT 1 cut(s) 216
CviAII CATG 3 cut(s) 143, 222, 227
CviJI RGCY 3 cut(s) 30, 85, 129
CviKI_1 RGCY 3 cut(s) 30, 85, 129
CviQI GTAC 2 cut(s) 109, 233
DdeI CTNAG 1 cut(s) 239
DpnI GATC 2 cut(s) 244, 313
DpnII GATC 2 cut(s) 242, 311
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 214
Eco91I GGTNACC 1 cut(s) 189
EcoO65I GGTNACC 1 cut(s) 189
EcoRI GAATTC 1 cut(s) 64
EcoRV GATATC 1 cut(s) 268
FaeI CATG 3 cut(s) 146, 225, 230
FaiI YATR 5 cut(s) 99, 144, 223, 228, 290
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 1 cut(s) 170
FatI CATG 3 cut(s) 142, 221, 226
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 126
GluI GCNGC 1 cut(s) 31
HapII CCGG 2 cut(s) 25, 217
Hin1II CATG 3 cut(s) 146, 225, 230
HinfI GANTC 1 cut(s) 135
HpaII CCGG 2 cut(s) 25, 217
HphI GGTGA 1 cut(s) 183
Hpy188I TCNGA 2 cut(s) 169, 242
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 2 cut(s) 114, 142
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 239
Hsp92II CATG 3 cut(s) 146, 225, 230
Kzo9I GATC 2 cut(s) 242, 311
LmnI GCTCC 3 cut(s) 27, 38, 181
LpnPI CCDG 5 cut(s) 38, 54, 100, 230, 295
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 189
MalI GATC 2 cut(s) 244, 313
MboI GATC 2 cut(s) 242, 311
MboII GAAGA 3 cut(s) 8, 68, 262
MflI RGATCY 2 cut(s) 242, 311
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 2 cut(s) 64, 150
MroXI GAANNNNTTC 1 cut(s) 234
MspI CCGG 2 cut(s) 25, 217
MwoI GCNNNNNNNGC 1 cut(s) 30
NdeII GATC 2 cut(s) 242, 311
NlaIII CATG 3 cut(s) 146, 225, 230
NmuCI GTSAC 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 185
PinAI ACCGGT 1 cut(s) 216
PkrI GCNGC 1 cut(s) 32
PspEI GGTNACC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 214
PsuI RGATCY 2 cut(s) 242, 311
RsaI GTAC 2 cut(s) 110, 234
RsaNI GTAC 2 cut(s) 109, 233
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 2 cut(s) 242, 311
Sau96I GGNCC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 234
SduI GDGCHC 1 cut(s) 178
SetI ASST 3 cut(s) 32, 131, 323
SfcI CTRYAG 1 cut(s) 130
SinI GGWCC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 2 cut(s) 64, 150
SspMI CTAG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 64, 150
TatI WGTACW 1 cut(s) 232
TfiI GAWTC 1 cut(s) 135
TscAI CASTG 2 cut(s) 280, 289
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 2 cut(s) 8, 243
TspGWI ACGGA 1 cut(s) 25
TspRI CASTG 2 cut(s) 280, 289
Van91I CCANNNNNTGG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 64
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 1 cut(s) 126
ZrmI AGTACT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.