FvH4_5g27020

AarF domain-containing protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
18335806 .. 18340389
4584 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27020.t4

Sequence Viewer

Length: 1311 bp
ATGTTGTGGCCCTTATTGATGAATTTGCACGCAGAGTTTATCAAGAGCTCAACTATGTGCAGGTGCGTGCAGGAGGGACAAAATGCGAGGAGATTTAAGAAATTGTATGCTGACAAGAAAGATGTTCTCGTCCCAGACATTTTCTGGGATTACACCAGCACCAAAGTGTTGACGATGGAGTGGGTAAATGGAGTCAAATTAAATGAGCAAGCTGCCATTGAGGGTCAAGGGTTGAAAGTATTGGATCTGGTTAACACTGGCATACAATGCAGCCTCAGACAGCTACTTGAGTATGGATATTTTCATGCAGATCCTCATCCTGGGAATCTCTTGGCAACACCTGAAGGAAAGCTTGCCTTTCTTGATTTTGGAATGATGAGTGAAACACCAGAAGAAGCTAGATTTGCTATCATCGGTCATGTTGTTCACATGGTTAATCGGGATTATGAAGCTATGGCTAATGATTACTATGCTCTAGATTTCTTATCGCCTGATGTAGATGTTTCTCCAATTGTACCAGCTCTTCGGAACTTCTTTGATGATGCGCTGAATTCTACTGTTAGTGAACTGAATTTTAAAACACTGGTGGACGGTCTAGGTGCTGTTTTGTATGAATATCCATTTAATGTCCCAGCTTATTACGCATTGATACTAAGGTCACTCACAGTACTAGAAGGTCTAGCCCTTTATGCTGATCCTAATTTCAAGGTGCTGGCTGCTTCATACCCGTATTTTGCTAAAAGGCTTCTGACTGATCCAAATCCGTATCTCAGAGATGCTCTTATTGAGTTGCTTTTCCAGGATGGGAAGTTTAGGTGGAATCGACTAGAAAGTTTGCTGGTTCAAGGAAGCAAAGATAGAGATTTCTCTGCAAAAGATGCTTTACAGCCTGCTTTGAAGTTATTATTGGGTCCGGATGGTGAAGAACTTCGGACTTTAGTTGTAAAGGAGGCTGTGCGTGTCACTGAAGCCTTTATTTGGGGCACAGCTATTGACACATACAACTCTATGCCCGAATTTATGAAGGGTATGATTGTTAATGGCAATGCTATTGGACCTCTGGCAATGAGCGTCGCTGAACAAGAAAGCATGATAGCACTCCGAGACCAAGTAATCAGAATTTGGGGACTTCTGAGAACCTCTGAAAGCTTTGACCCTGCGATTTTGCAGCCCATTTTACTGGTCCTTCAACAACCTGAAGCACGCAGCCTTGGGGGGAAAGTTATTGGTGGGATCACACAGCGACTTGCGGCACGGTTGTTGCAACAAGTTCTTCGAGTGCCAACACCAGCTCCTGCTTCGACTTTGTGA

Protein Analysis

437

Amino Acids

48.78

Weight (kDa)

5.18

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC1 PF03109 91 - 334 4e-75 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 51
Acc36I ACCTGC 1 cut(s) 51
AccIII TCCGGA 1 cut(s) 913
AciI CCGC 1 cut(s) 1250
AclWI GGATC 5 cut(s) 252, 305, 689, 749, 1241
AcsI RAATTY 5 cut(s) 22, 550, 571, 1016, 1119
AcuI CTGAAG 3 cut(s) 363, 987, 1218
AfaI GTAC 2 cut(s) 516, 669
AfiI CCNNNNNNNGG 2 cut(s) 320, 978
AgsI TTSAA 5 cut(s) 235, 706, 845, 898, 1190
AjnI CCWGG 2 cut(s) 319, 798
AjuI GAANNNNNNNTTGG 2 cut(s) 890, 922
AleI CACNNNNGTG 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 1098
AlwI GGATC 5 cut(s) 252, 305, 689, 749, 1241
AlwNI CAGNNNCTG 1 cut(s) 1295
Aor13HI TCCGGA 1 cut(s) 913
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 5 cut(s) 212, 270, 716, 1168, 1206
ApoI RAATTY 5 cut(s) 22, 550, 571, 1016, 1119
Asp700I GAANNNNTTC 1 cut(s) 927
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 4 cut(s) 9, 911, 1055, 1183
AsuHPI GGTGA 1 cut(s) 932
AvaII GGWCC 3 cut(s) 911, 1055, 1183
BaeGI GKGCMC 1 cut(s) 986
BaeI ACNNNNGTAYC 2 cut(s) 641, 674
BanII GRGCYC 1 cut(s) 50
BarI GAAGNNNNNNTAC 2 cut(s) 507, 539
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 5 cut(s) 199, 282, 703, 1180, 1218
BccI CCATC 3 cut(s) 169, 797, 911
BciT130I CCWGG 2 cut(s) 321, 800
BcoDI GTCTC 1 cut(s) 1098
BfaI CTAG 6 cut(s) 399, 476, 596, 671, 680, 827
BfuAI ACCTGC 1 cut(s) 51
BisI GCNGC 6 cut(s) 213, 271, 717, 1169, 1207, 1251
BlsI GCNGC 6 cut(s) 214, 272, 718, 1170, 1208, 1252
BmcAI AGTACT 1 cut(s) 669
Bme1390I CCNGG 2 cut(s) 321, 800
Bme18I GGWCC 3 cut(s) 911, 1055, 1183
BmgT120I GGNCC 4 cut(s) 9, 911, 1055, 1183
BmiI GGNNCC 1 cut(s) 912
BmrFI CCNGG 2 cut(s) 321, 800
BmsI GCATC 3 cut(s) 532, 766, 868
BpuEI CTTGAG 1 cut(s) 308
BsaBI GATNNNNATC 2 cut(s) 315, 759
BsaI GGTCTC 1 cut(s) 1098
BsaJI CCNNGG 2 cut(s) 320, 1210
BsaWI WCCGGW 1 cut(s) 913
BsaXI ACNNNNNCTCC 2 cut(s) 1276, 1306
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 978
Bse1I ACTGG 3 cut(s) 262, 588, 1185
Bse3DI GCAATG 2 cut(s) 1051, 1071
Bse8I GATNNNNATC 2 cut(s) 315, 759
BseAI TCCGGA 1 cut(s) 913
BseBI CCWGG 2 cut(s) 321, 800
BseDI CCNNGG 2 cut(s) 320, 1210
BseGI GGATG 3 cut(s) 316, 808, 922
BseJI GATNNNNATC 2 cut(s) 315, 759
BseLI CCNNNNNNNGG 2 cut(s) 320, 978
BseMI GCAATG 2 cut(s) 1051, 1071
BseMII CTCAG 3 cut(s) 289, 784, 1124
BseNI ACTGG 3 cut(s) 262, 588, 1185
BseRI GAGGAG 1 cut(s) 103
BseSI GKGCMC 1 cut(s) 986
BseXI GCAGC 5 cut(s) 199, 282, 703, 1180, 1218
BseYI CCCAGC 1 cut(s) 631
BsgI GTGCAG 2 cut(s) 79, 89
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 914
BslFI GGGAC 4 cut(s) 90, 116, 614, 1140
BslI CCNNNNNNNGG 2 cut(s) 320, 978
BsmAI GTCTC 1 cut(s) 1098
BsmFI GGGAC 4 cut(s) 90, 116, 614, 1140
BsnI GGCC 1 cut(s) 10
Bso31I GGTCTC 1 cut(s) 1098
Bsp1286I GDGCHC 2 cut(s) 50, 986
Bsp13I TCCGGA 1 cut(s) 913
Bsp143I GATC 5 cut(s) 244, 310, 694, 754, 1233
BspACI CCGC 1 cut(s) 1250
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 3 cut(s) 288, 783, 1125
BspEI TCCGGA 1 cut(s) 913
BspLI GGNNCC 1 cut(s) 912
BspMI ACCTGC 1 cut(s) 51
BspPI GGATC 5 cut(s) 252, 305, 689, 749, 1241
BspQI GCTCTTC 1 cut(s) 528
BspTNI GGTCTC 1 cut(s) 1098
BsrDI GCAATG 2 cut(s) 1051, 1071
BsrI ACTGG 3 cut(s) 262, 588, 1185
BssECI CCNNGG 2 cut(s) 320, 1210
BssMI GATC 5 cut(s) 244, 310, 694, 754, 1233
BssT1I CCWWGG 1 cut(s) 1210
Bst2UI CCWGG 2 cut(s) 321, 800
Bst4CI ACNGT 4 cut(s) 559, 593, 667, 1257
Bst6I CTCTTC 1 cut(s) 528
BstAPI GCANNNNNTGC 2 cut(s) 267, 878
BstC8I GCNNGC 7 cut(s) 30, 68, 210, 354, 714, 891, 1204
BstDEI CTNAG 4 cut(s) 275, 653, 770, 1133
BstF5I GGATG 3 cut(s) 316, 808, 922
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 5 cut(s) 247, 313, 697, 757, 1236
BstMAI GTCTC 1 cut(s) 1098
BstMBI GATC 5 cut(s) 244, 310, 694, 754, 1233
BstMWI GCNNNNNNNGC 5 cut(s) 267, 404, 641, 689, 878
BstNI CCWGG 2 cut(s) 321, 800
BstSCI CCNGG 2 cut(s) 319, 798
BstSLI GKGCMC 1 cut(s) 986
BstV1I GCAGC 5 cut(s) 199, 282, 703, 1180, 1218
BstX2I RGATCY 2 cut(s) 244, 310
BstXI CCANNNNNNTGG 1 cut(s) 1180
BstYI RGATCY 2 cut(s) 244, 310
BsuRI GGCC 1 cut(s) 10
BtsCI GGATG 3 cut(s) 316, 808, 922
BtsIMutI CAGTG 3 cut(s) 255, 581, 963
BveI ACCTGC 1 cut(s) 51
Cac8I GCNNGC 7 cut(s) 30, 68, 210, 354, 714, 891, 1204
CaiI CAGNNNCTG 1 cut(s) 1295
CfoI GCGC 1 cut(s) 547
Cfr13I GGNCC 4 cut(s) 9, 911, 1055, 1183
CseI GACGC 1 cut(s) 1060
Csp6I GTAC 2 cut(s) 515, 668
CviAII CATG 4 cut(s) 305, 419, 430, 1090
CviQI GTAC 2 cut(s) 515, 668
DdeI CTNAG 4 cut(s) 275, 653, 770, 1133
DpnI GATC 5 cut(s) 246, 312, 696, 756, 1235
DpnII GATC 5 cut(s) 244, 310, 694, 754, 1233
DraI TTTAAA 1 cut(s) 577
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Ecl136II GAGCTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 1210
Eco24I GRGCYC 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 1098
Eco47I GGWCC 3 cut(s) 911, 1055, 1183
Eco53kI GAGCTC 1 cut(s) 48
Eco57I CTGAAG 3 cut(s) 363, 987, 1218
EcoICRI GAGCTC 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 550
EcoRII CCWGG 2 cut(s) 319, 798
EcoT14I CCWWGG 1 cut(s) 1210
EcoT38I GRGCYC 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 1210
FaeI CATG 4 cut(s) 308, 422, 433, 1093
FalI AAGNNNNNCTT 4 cut(s) 336, 368, 341, 373
FaqI GGGAC 4 cut(s) 90, 116, 614, 1140
FatI CATG 4 cut(s) 304, 418, 429, 1089
Fnu4HI GCNGC 6 cut(s) 213, 271, 717, 1169, 1207, 1251
FokI GGATG 3 cut(s) 303, 815, 929
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 6 cut(s) 213, 271, 717, 1169, 1207, 1251
FspBI CTAG 6 cut(s) 399, 476, 596, 671, 680, 827
GlaI GCGC 1 cut(s) 546
GluI GCNGC 6 cut(s) 213, 271, 717, 1169, 1207, 1251
GsaI CCCAGC 1 cut(s) 635
HaeIII GGCC 1 cut(s) 10
HapII CCGG 1 cut(s) 914
HgaI GACGC 1 cut(s) 1060
HhaI GCGC 1 cut(s) 547
Hin1II CATG 4 cut(s) 308, 422, 433, 1093
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HincII GTYRAC 2 cut(s) 171, 253
HindII GTYRAC 2 cut(s) 171, 253
HindIII AAGCTT 2 cut(s) 350, 1147
HinfI GANTC 3 cut(s) 192, 325, 820
HpaI GTTAAC 1 cut(s) 253
HpaII CCGG 1 cut(s) 914
HphI GGTGA 1 cut(s) 932
Hpy166II GTNNAC 5 cut(s) 171, 253, 427, 566, 589
Hpy188I TCNGA 9 cut(s) 278, 528, 750, 773, 933, 1103, 1118, 1134, 1144
Hpy188III TCNNGA 5 cut(s) 43, 362, 440, 476, 914
Hpy8I GTNNAC 5 cut(s) 171, 253, 427, 566, 589
Hpy99I CGWCG 1 cut(s) 1076
HpyAV CCTTC 4 cut(s) 338, 668, 1018, 1196
HpyCH4III ACNGT 4 cut(s) 559, 593, 667, 1257
HpyCH4V TGCA 8 cut(s) 28, 60, 70, 270, 308, 872, 1168, 1264
HpyF10VI GCNNNNNNNGC 5 cut(s) 267, 404, 641, 689, 878
HpyF3I CTNAG 4 cut(s) 275, 653, 770, 1133
Hsp92II CATG 4 cut(s) 308, 422, 433, 1093
HspAI GCGC 1 cut(s) 545
Kpn2I TCCGGA 1 cut(s) 913
KspAI GTTAAC 1 cut(s) 253
Kzo9I GATC 5 cut(s) 244, 310, 694, 754, 1233
LguI GCTCTTC 1 cut(s) 528
LmnI GCTCC 1 cut(s) 1297
Lsp1109I GCAGC 5 cut(s) 199, 282, 703, 1180, 1218
LweI GCATC 3 cut(s) 532, 766, 868
MaeI CTAG 6 cut(s) 399, 476, 596, 671, 680, 827
MaeIII GTNAC 2 cut(s) 657, 961
MalI GATC 5 cut(s) 246, 312, 696, 756, 1235
MboI GATC 5 cut(s) 244, 310, 694, 754, 1233
MboII GAAGA 4 cut(s) 404, 515, 935, 1265
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 2 cut(s) 244, 310
MhlI GDGCHC 2 cut(s) 50, 986
MluCI AATT 9 cut(s) 22, 101, 197, 510, 550, 571, 700, 1016, 1119
MlyI GAGTC 1 cut(s) 201
MnlI CCTC 8 cut(s) 67, 81, 214, 284, 324, 943, 1068, 1150
MroI TCCGGA 1 cut(s) 913
MroXI GAANNNNTTC 1 cut(s) 927
MseI TTAA 7 cut(s) 96, 200, 252, 435, 576, 624, 1038
MslI CAYNNNNRTG 1 cut(s) 164
MspI CCGG 1 cut(s) 914
MspR9I CCNGG 2 cut(s) 321, 800
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 2 cut(s) 321, 800
MwoI GCNNNNNNNGC 5 cut(s) 267, 404, 641, 689, 878
NdeII GATC 5 cut(s) 244, 310, 694, 754, 1233
NlaIII CATG 4 cut(s) 308, 422, 433, 1093
NlaIV GGNNCC 1 cut(s) 912
NmuCI GTSAC 2 cut(s) 657, 961
OliI CACNNNNGTG 1 cut(s) 164
PaqCI CACCTGC 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 528
PdmI GAANNNNTTC 1 cut(s) 927
PfeI GAWTC 2 cut(s) 325, 820
PfoI TCCNGGA 1 cut(s) 798
PkrI GCNGC 6 cut(s) 214, 272, 718, 1170, 1208, 1252
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 319, 798
PspFI CCCAGC 1 cut(s) 631
PspGI CCWGG 2 cut(s) 319, 798
PspN4I GGNNCC 1 cut(s) 912
PspPI GGNCC 4 cut(s) 9, 911, 1055, 1183
PstNI CAGNNNCTG 1 cut(s) 1295
PsuI RGATCY 2 cut(s) 244, 310
RsaI GTAC 2 cut(s) 516, 669
RsaNI GTAC 2 cut(s) 515, 668
RseI CAYNNNNRTG 1 cut(s) 164
SacI GAGCTC 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 528
SaqAI TTAA 7 cut(s) 96, 200, 252, 435, 576, 624, 1038
SatI GCNGC 6 cut(s) 213, 271, 717, 1169, 1207, 1251
Sau3AI GATC 5 cut(s) 244, 310, 694, 754, 1233
Sau96I GGNCC 4 cut(s) 9, 911, 1055, 1183
ScaI AGTACT 1 cut(s) 669
SchI GAGTC 1 cut(s) 201
ScrFI CCNGG 2 cut(s) 321, 800
SduI GDGCHC 2 cut(s) 50, 986
SfaNI GCATC 3 cut(s) 532, 766, 868
SinI GGWCC 3 cut(s) 911, 1055, 1183
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 9 cut(s) 22, 101, 197, 510, 550, 571, 700, 1016, 1119
SsiI CCGC 1 cut(s) 1250
SspMI CTAG 6 cut(s) 399, 476, 596, 671, 680, 827
SstI GAGCTC 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 319, 798
StyI CCWWGG 1 cut(s) 1210
TaaI ACNGT 4 cut(s) 559, 593, 667, 1257
TaqI TCGA 3 cut(s) 823, 1276, 1301
TaqII GACCGA 1 cut(s) 404
TasI AATT 9 cut(s) 22, 101, 197, 510, 550, 571, 700, 1016, 1119
TatI WGTACW 1 cut(s) 667
TauI GCSGC 1 cut(s) 1253
TfiI GAWTC 2 cut(s) 325, 820
Tru1I TTAA 7 cut(s) 96, 200, 252, 435, 576, 624, 1038
Tru9I TTAA 7 cut(s) 96, 200, 252, 435, 576, 624, 1038
TscAI CASTG 3 cut(s) 262, 588, 970
TseFI GTSAC 2 cut(s) 657, 961
TseI GCWGC 5 cut(s) 212, 270, 716, 1168, 1206
Tsp45I GTSAC 2 cut(s) 657, 961
TspDTI ATGAA 6 cut(s) 35, 293, 462, 627, 711, 1037
TspGWI ACGGA 1 cut(s) 753
TspRI CASTG 3 cut(s) 262, 588, 970
VpaK11BI GGWCC 3 cut(s) 911, 1055, 1183
XapI RAATTY 5 cut(s) 22, 550, 571, 1016, 1119
XbaI TCTAGA 1 cut(s) 475
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XmnI GAANNNNTTC 1 cut(s) 927
XspI CTAG 6 cut(s) 399, 476, 596, 671, 680, 827
ZrmI AGTACT 1 cut(s) 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.