Belongs to the DEAD box helicase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TPR_PATROL1 | PF25761 | 666 - 1065 | 1.4e-101 | PATROL1-like, TPR repeats |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1773 |
| AccI | GTMKAC | 1 cut(s) | 1190 |
| AccII | CGCG | 3 cut(s) | 39, 144, 739 |
| AciI | CCGC | 9 cut(s) | 28, 34, 37, 46, 478, 652, 739, 1645, 3124 |
| AclWI | GGATC | 6 cut(s) | 283, 643, 1914, 2154, 2667, 3218 |
| AcoI | YGGCCR | 1 cut(s) | 2752 |
| AcsI | RAATTY | 5 cut(s) | 781, 2622, 2921, 3161, 3368 |
| AcuI | CTGAAG | 5 cut(s) | 195, 702, 1739, 1887, 3180 |
| AcyI | GRCGYC | 1 cut(s) | 80 |
| AfaI | GTAC | 3 cut(s) | 191, 2889, 3325 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1059, 1784 |
| AflIII | ACRYGT | 3 cut(s) | 395, 2421, 2510 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 955 |
| AjiI | CACGTC | 2 cut(s) | 398, 2051 |
| AjnI | CCWGG | 2 cut(s) | 727, 1024 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 176, 208, 208, 240, 1388, 1420, 1679, 1711 |
| AleI | CACNNNNGTG | 1 cut(s) | 3119 |
| Alw21I | GWGCWC | 2 cut(s) | 701, 2568 |
| Alw26I | GTCTC | 5 cut(s) | 1043, 2132, 2171, 2303, 2781 |
| Alw44I | GTGCAC | 1 cut(s) | 697 |
| AlwI | GGATC | 6 cut(s) | 283, 643, 1914, 2154, 2667, 3218 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1895 |
| AoxI | GGCC | 5 cut(s) | 404, 563, 2752, 2855, 2944 |
| ApaLI | GTGCAC | 1 cut(s) | 697 |
| ApeKI | GCWGC | 8 cut(s) | 622, 1001, 1592, 1634, 1796, 1892, 2603, 3044 |
| ApoI | RAATTY | 5 cut(s) | 781, 2622, 2921, 3161, 3368 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 602, 634, 800, 832, 2394, 2426 |
| AsiSI | GCGATCGC | 1 cut(s) | 43 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 861, 2946 |
| AspA2I | CCTAGG | 1 cut(s) | 284 |
| AspLEI | GCGC | 3 cut(s) | 125, 295, 892 |
| AspS9I | GGNCC | 2 cut(s) | 1237, 2855 |
| AsuC2I | CCSGG | 2 cut(s) | 321, 1757 |
| AsuHPI | GGTGA | 8 cut(s) | 270, 368, 378, 1516, 1991, 2023, 2951, 3231 |
| AsuII | TTCGAA | 1 cut(s) | 227 |
| AvaII | GGWCC | 1 cut(s) | 1237 |
| AvrII | CCTAGG | 1 cut(s) | 284 |
| AxyI | CCTNAGG | 1 cut(s) | 2985 |
| BaeGI | GKGCMC | 2 cut(s) | 701, 1778 |
| BalI | TGGCCA | 1 cut(s) | 2754 |
| BanI | GGYRCC | 1 cut(s) | 1773 |
| BanII | GRGCYC | 2 cut(s) | 2485, 2568 |
| BbsI | GAAGAC | 5 cut(s) | 63, 951, 1411, 3186, 3213 |
| Bbv12I | GWGCWC | 2 cut(s) | 701, 2568 |
| BbvI | GCAGC | 8 cut(s) | 634, 1013, 1579, 1621, 1808, 1879, 2615, 3031 |
| BceAI | ACGGC | 3 cut(s) | 659, 1370, 1865 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1369, 1403 |
| BciT130I | CCWGG | 2 cut(s) | 729, 1026 |
| BciVI | GTATCC | 1 cut(s) | 219 |
| BclI | TGATCA | 2 cut(s) | 895, 3082 |
| BcnI | CCSGG | 2 cut(s) | 321, 1757 |
| BcoDI | GTCTC | 5 cut(s) | 1043, 2132, 2171, 2303, 2781 |
| BfaI | CTAG | 7 cut(s) | 285, 312, 444, 702, 2456, 3071, 3281 |
| BfmI | CTRYAG | 1 cut(s) | 3011 |
| BfoI | RGCGCY | 1 cut(s) | 126 |
| BfuI | GTATCC | 1 cut(s) | 219 |
| BglII | AGATCT | 3 cut(s) | 1957, 3253, 3277 |
| BlnI | CCTAGG | 1 cut(s) | 284 |
| BlpI | GCTNAGC | 1 cut(s) | 2019 |
| Bme1390I | CCNGG | 4 cut(s) | 321, 729, 1026, 1757 |
| Bme18I | GGWCC | 1 cut(s) | 1237 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 955 |
| BmgBI | CACGTC | 2 cut(s) | 398, 2051 |
| BmgT120I | GGNCC | 2 cut(s) | 1237, 2855 |
| BmiI | GGNNCC | 3 cut(s) | 1238, 1775, 2076 |
| BmrFI | CCNGG | 4 cut(s) | 321, 729, 1026, 1757 |
| BpiI | GAAGAC | 5 cut(s) | 63, 951, 1411, 3186, 3213 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 31 |
| BpmI | CTGGAG | 2 cut(s) | 77, 246 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2019 |
| Bpu14I | TTCGAA | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 3 cut(s) | 1625, 2084, 2363 |
| BpuMI | CCSGG | 2 cut(s) | 321, 1757 |
| Bsa29I | ATCGAT | 2 cut(s) | 750, 2108 |
| BsaBI | GATNNNNATC | 1 cut(s) | 530 |
| BsaHI | GRCGYC | 1 cut(s) | 80 |
| BsaI | GGTCTC | 1 cut(s) | 1043 |
| BsaJI | CCNNGG | 6 cut(s) | 284, 364, 401, 728, 2220, 2749 |
| BsaWI | WCCGGW | 2 cut(s) | 152, 2320 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2066, 2096 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1059, 1784 |
| Bse1I | ACTGG | 4 cut(s) | 1939, 2050, 2641, 2826 |
| Bse21I | CCTNAGG | 1 cut(s) | 2985 |
| Bse3DI | GCAATG | 3 cut(s) | 693, 833, 2554 |
| Bse8I | GATNNNNATC | 1 cut(s) | 530 |
| BseBI | CCWGG | 2 cut(s) | 729, 1026 |
| BseCI | ATCGAT | 2 cut(s) | 750, 2108 |
| BseDI | CCNNGG | 6 cut(s) | 284, 364, 401, 728, 2220, 2749 |
| BseJI | GATNNNNATC | 1 cut(s) | 530 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1059, 1784 |
| BseMI | GCAATG | 3 cut(s) | 693, 833, 2554 |
| BseMII | CTCAG | 8 cut(s) | 133, 1722, 1934, 2033, 2102, 2677, 2976, 3259 |
| BseNI | ACTGG | 4 cut(s) | 1939, 2050, 2641, 2826 |
| BseRI | GAGGAG | 5 cut(s) | 20, 76, 1582, 2150, 2277 |
| BseSI | GKGCMC | 2 cut(s) | 701, 1778 |
| BseXI | GCAGC | 8 cut(s) | 634, 1013, 1579, 1621, 1808, 1879, 2615, 3031 |
| BseYI | CCCAGC | 1 cut(s) | 389 |
| BsgI | GTGCAG | 5 cut(s) | 635, 686, 764, 1946, 2557 |
| Bsh1236I | CGCG | 3 cut(s) | 39, 144, 739 |
| Bsh1285I | CGRYCG | 1 cut(s) | 43 |
| BshFI | GGCC | 5 cut(s) | 406, 565, 2754, 2857, 2946 |
| BshNI | GGYRCC | 1 cut(s) | 1773 |
| BshVI | ATCGAT | 2 cut(s) | 750, 2108 |
| BsiEI | CGRYCG | 1 cut(s) | 43 |
| BsiHKAI | GWGCWC | 2 cut(s) | 701, 2568 |
| BsiSI | CCGG | 4 cut(s) | 153, 320, 1757, 2321 |
| BslFI | GGGAC | 1 cut(s) | 962 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1059, 1784 |
| BsmAI | GTCTC | 5 cut(s) | 1043, 2132, 2171, 2303, 2781 |
| BsmBI | CGTCTC | 3 cut(s) | 2171, 2303, 2781 |
| BsmFI | GGGAC | 1 cut(s) | 962 |
| BsmI | GAATGC | 1 cut(s) | 2672 |
| BsnI | GGCC | 5 cut(s) | 406, 565, 2754, 2857, 2946 |
| Bso31I | GGTCTC | 1 cut(s) | 1043 |
| Bsp119I | TTCGAA | 1 cut(s) | 227 |
| Bsp1286I | GDGCHC | 4 cut(s) | 701, 1778, 2485, 2568 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2019 |
| Bsp19I | CCATGG | 1 cut(s) | 364 |
| BspACI | CCGC | 9 cut(s) | 28, 34, 37, 46, 478, 652, 739, 1645, 3124 |
| BspANI | GGCC | 5 cut(s) | 406, 565, 2754, 2857, 2946 |
| BspCNI | CTCAG | 8 cut(s) | 132, 1723, 1933, 2032, 2101, 2676, 2977, 3258 |
| BspDI | ATCGAT | 2 cut(s) | 750, 2108 |
| BspFNI | CGCG | 3 cut(s) | 39, 144, 739 |
| BspLI | GGNNCC | 3 cut(s) | 1238, 1775, 2076 |
| BspMAI | CTGCAG | 1 cut(s) | 3015 |
| BspPI | GGATC | 6 cut(s) | 283, 643, 1914, 2154, 2667, 3218 |
| BspQI | GCTCTTC | 1 cut(s) | 2573 |
| BspT104I | TTCGAA | 1 cut(s) | 227 |
| BspT107I | GGYRCC | 1 cut(s) | 1773 |
| BspTNI | GGTCTC | 1 cut(s) | 1043 |
| BsrDI | GCAATG | 3 cut(s) | 693, 833, 2554 |
| BsrI | ACTGG | 4 cut(s) | 1939, 2050, 2641, 2826 |
| BssECI | CCNNGG | 6 cut(s) | 284, 364, 401, 728, 2220, 2749 |
| BssNI | GRCGYC | 1 cut(s) | 80 |
| BssT1I | CCWWGG | 5 cut(s) | 284, 364, 401, 2220, 2749 |
| Bst2UI | CCWGG | 2 cut(s) | 729, 1026 |
| Bst4CI | ACNGT | 5 cut(s) | 1251, 1294, 1490, 2143, 2746 |
| Bst6I | CTCTTC | 3 cut(s) | 26, 1026, 2573 |
| BstACI | GRCGYC | 1 cut(s) | 80 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1773, 2609 |
| BstBI | TTCGAA | 1 cut(s) | 227 |
| BstC8I | GCNNGC | 7 cut(s) | 50, 291, 504, 1139, 1361, 1707, 2193 |
| BstDSI | CCRYGG | 1 cut(s) | 364 |
| BstFNI | CGCG | 3 cut(s) | 39, 144, 739 |
| BstH2I | RGCGCY | 1 cut(s) | 126 |
| BstHHI | GCGC | 3 cut(s) | 125, 295, 892 |
| BstMAI | GTCTC | 5 cut(s) | 1043, 2132, 2171, 2303, 2781 |
| BstMCI | CGRYCG | 1 cut(s) | 43 |
| BstNI | CCWGG | 2 cut(s) | 729, 1026 |
| BstNSI | RCATGY | 4 cut(s) | 2514, 2547, 2672, 3274 |
| BstSCI | CCNGG | 4 cut(s) | 319, 727, 1024, 1755 |
| BstSFI | CTRYAG | 1 cut(s) | 3011 |
| BstSLI | GKGCMC | 2 cut(s) | 701, 1778 |
| BstUI | CGCG | 3 cut(s) | 39, 144, 739 |
| BstV1I | GCAGC | 8 cut(s) | 634, 1013, 1579, 1621, 1808, 1879, 2615, 3031 |
| BstV2I | GAAGAC | 5 cut(s) | 63, 951, 1411, 3186, 3213 |
| BstX2I | RGATCY | 5 cut(s) | 1957, 2659, 3223, 3253, 3277 |
| BstYI | RGATCY | 5 cut(s) | 1957, 2659, 3223, 3253, 3277 |
| Bsu15I | ATCGAT | 2 cut(s) | 750, 2108 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2985 |
| BsuI | GTATCC | 1 cut(s) | 219 |
| BsuRI | GGCC | 5 cut(s) | 406, 565, 2754, 2857, 2946 |
| BsuTUI | ATCGAT | 2 cut(s) | 750, 2108 |
| BtgI | CCRYGG | 1 cut(s) | 364 |
| BtrI | CACGTC | 2 cut(s) | 398, 2051 |
| BtsI | GCAGTG | 2 cut(s) | 1375, 3008 |
| BtsIMutI | CAGTG | 4 cut(s) | 1375, 1549, 2819, 3008 |
| Cac8I | GCNNGC | 7 cut(s) | 50, 291, 504, 1139, 1361, 1707, 2193 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1895 |
| CfoI | GCGC | 3 cut(s) | 125, 295, 892 |
| Cfr13I | GGNCC | 2 cut(s) | 1237, 2855 |
| ClaI | ATCGAT | 2 cut(s) | 750, 2108 |
| CseI | GACGC | 4 cut(s) | 69, 133, 1038, 2798 |
| Csp6I | GTAC | 3 cut(s) | 190, 2888, 3324 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 136, 171 |
| CviQI | GTAC | 3 cut(s) | 190, 2888, 3324 |
| DraI | TTTAAA | 2 cut(s) | 373, 421 |
| DriI | GACNNNNNGTC | 1 cut(s) | 955 |
| EaeI | YGGCCR | 1 cut(s) | 2752 |
| Eam1104I | CTCTTC | 3 cut(s) | 26, 1026, 2573 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 955 |
| EarI | CTCTTC | 3 cut(s) | 26, 1026, 2573 |
| Ecl136II | GAGCTC | 1 cut(s) | 2566 |
| Eco130I | CCWWGG | 5 cut(s) | 284, 364, 401, 2220, 2749 |
| Eco147I | AGGCCT | 3 cut(s) | 406, 565, 2946 |
| Eco24I | GRGCYC | 2 cut(s) | 2485, 2568 |
| Eco31I | GGTCTC | 1 cut(s) | 1043 |
| Eco32I | GATATC | 1 cut(s) | 2179 |
| Eco47I | GGWCC | 1 cut(s) | 1237 |
| Eco53kI | GAGCTC | 1 cut(s) | 2566 |
| Eco57I | CTGAAG | 5 cut(s) | 195, 702, 1739, 1887, 3180 |
| Eco81I | CCTNAGG | 1 cut(s) | 2985 |
| EcoICRI | GAGCTC | 1 cut(s) | 2566 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1237 |
| EcoRI | GAATTC | 1 cut(s) | 3368 |
| EcoRII | CCWGG | 2 cut(s) | 727, 1024 |
| EcoRV | GATATC | 1 cut(s) | 2179 |
| EcoT14I | CCWWGG | 5 cut(s) | 284, 364, 401, 2220, 2749 |
| EcoT22I | ATGCAT | 2 cut(s) | 1218, 2674 |
| EcoT38I | GRGCYC | 2 cut(s) | 2485, 2568 |
| ErhI | CCWWGG | 5 cut(s) | 284, 364, 401, 2220, 2749 |
| Esp3I | CGTCTC | 3 cut(s) | 2171, 2303, 2781 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 176, 208, 1869, 1901 |
| FaqI | GGGAC | 1 cut(s) | 962 |
| FauI | CCCGC | 4 cut(s) | 471, 732, 1638, 3117 |
| FauNDI | CATATG | 2 cut(s) | 1557, 1612 |
| FbaI | TGATCA | 2 cut(s) | 895, 3082 |
| FblI | GTMKAC | 1 cut(s) | 1190 |
| FriOI | GRGCYC | 2 cut(s) | 2485, 2568 |
| FspBI | CTAG | 7 cut(s) | 285, 312, 444, 702, 2456, 3071, 3281 |
| GlaI | GCGC | 3 cut(s) | 124, 294, 891 |
| GsaI | CCCAGC | 1 cut(s) | 393 |
| GsuI | CTGGAG | 2 cut(s) | 77, 246 |
| HaeII | RGCGCY | 1 cut(s) | 126 |
| HaeIII | GGCC | 5 cut(s) | 406, 565, 2754, 2857, 2946 |
| HapII | CCGG | 4 cut(s) | 153, 320, 1757, 2321 |
| HgaI | GACGC | 4 cut(s) | 69, 133, 1038, 2798 |
| HhaI | GCGC | 3 cut(s) | 125, 295, 892 |
| Hin1I | GRCGYC | 1 cut(s) | 80 |
| Hin6I | GCGC | 3 cut(s) | 123, 293, 890 |
| HinP1I | GCGC | 3 cut(s) | 123, 293, 890 |
| HincII | GTYRAC | 1 cut(s) | 1182 |
| HindII | GTYRAC | 1 cut(s) | 1182 |
| HindIII | AAGCTT | 2 cut(s) | 50, 2706 |
| HpaII | CCGG | 4 cut(s) | 153, 320, 1757, 2321 |
| HphI | GGTGA | 8 cut(s) | 270, 368, 378, 1516, 1991, 2023, 2951, 3231 |
| Hpy166II | GTNNAC | 5 cut(s) | 699, 1182, 1191, 1451, 3053 |
| Hpy8I | GTNNAC | 5 cut(s) | 699, 1182, 1191, 1451, 3053 |
| Hpy99I | CGWCG | 2 cut(s) | 94, 1391 |
| HpyAV | CCTTC | 5 cut(s) | 576, 2819, 2868, 2936, 2957 |
| HpyCH4III | ACNGT | 5 cut(s) | 1251, 1294, 1490, 2143, 2746 |
| HpyCH4IV | ACGT | 4 cut(s) | 188, 397, 2050, 2423 |
| HpySE526I | ACGT | 4 cut(s) | 188, 397, 2050, 2423 |
| Hsp92I | GRCGYC | 1 cut(s) | 80 |
| HspAI | GCGC | 3 cut(s) | 123, 293, 890 |
| Ksp22I | TGATCA | 2 cut(s) | 895, 3082 |
| LguI | GCTCTTC | 1 cut(s) | 2573 |
| LmnI | GCTCC | 7 cut(s) | 7, 265, 1306, 2074, 2290, 2965, 3189 |
| Lsp1109I | GCAGC | 8 cut(s) | 634, 1013, 1579, 1621, 1808, 1879, 2615, 3031 |
| MaeI | CTAG | 7 cut(s) | 285, 312, 444, 702, 2456, 3071, 3281 |
| MaeII | ACGT | 4 cut(s) | 188, 397, 2050, 2423 |
| MaeIII | GTNAC | 5 cut(s) | 356, 1490, 1655, 1915, 2627 |
| MfeI | CAATTG | 2 cut(s) | 1626, 2499 |
| MflI | RGATCY | 5 cut(s) | 1957, 2659, 3223, 3253, 3277 |
| MhlI | GDGCHC | 4 cut(s) | 701, 1778, 2485, 2568 |
| MlsI | TGGCCA | 1 cut(s) | 2754 |
| MluNI | TGGCCA | 1 cut(s) | 2754 |
| MlyI | GAGTC | 4 cut(s) | 214, 491, 1616, 2290 |
| MmeI | TCCRAC | 5 cut(s) | 1237, 1270, 1884, 3251, 3287 |
| Mox20I | TGGCCA | 1 cut(s) | 2754 |
| Mph1103I | ATGCAT | 2 cut(s) | 1218, 2674 |
| MroXI | GAANNNNTTC | 2 cut(s) | 861, 2946 |
| MscI | TGGCCA | 1 cut(s) | 2754 |
| MslI | CAYNNNNRTG | 2 cut(s) | 662, 3119 |
| Msp20I | TGGCCA | 1 cut(s) | 2754 |
| MspA1I | CMGCKG | 2 cut(s) | 1141, 1892 |
| MspI | CCGG | 4 cut(s) | 153, 320, 1757, 2321 |
| MspR9I | CCNGG | 4 cut(s) | 321, 729, 1026, 1757 |
| MunI | CAATTG | 2 cut(s) | 1626, 2499 |
| Mva1269I | GAATGC | 1 cut(s) | 2672 |
| MvaI | CCWGG | 2 cut(s) | 729, 1026 |
| MvnI | CGCG | 3 cut(s) | 39, 144, 739 |
| NciI | CCSGG | 2 cut(s) | 321, 1757 |
| NcoI | CCATGG | 1 cut(s) | 364 |
| NdeI | CATATG | 2 cut(s) | 1557, 1612 |
| NlaIV | GGNNCC | 3 cut(s) | 1238, 1775, 2076 |
| NmuCI | GTSAC | 3 cut(s) | 356, 1490, 2627 |
| NsiI | ATGCAT | 2 cut(s) | 1218, 2674 |
| NspI | RCATGY | 4 cut(s) | 2514, 2547, 2672, 3274 |
| NspV | TTCGAA | 1 cut(s) | 227 |
| OliI | CACNNNNGTG | 1 cut(s) | 3119 |
| PceI | AGGCCT | 3 cut(s) | 406, 565, 2946 |
| PciI | ACATGT | 1 cut(s) | 2510 |
| PciSI | GCTCTTC | 1 cut(s) | 2573 |
| PctI | GAATGC | 1 cut(s) | 2672 |
| PdmI | GAANNNNTTC | 2 cut(s) | 861, 2946 |
| PfeI | GAWTC | 6 cut(s) | 200, 239, 269, 2777, 2876, 3074 |
| PflFI | GACNNNGTC | 1 cut(s) | 1186 |
| PfoI | TCCNGGA | 1 cut(s) | 1024 |
| Ple19I | CGATCG | 1 cut(s) | 43 |
| PleI | GAGTC | 4 cut(s) | 214, 490, 1615, 2290 |
| PpsI | GAGTC | 4 cut(s) | 214, 490, 1615, 2290 |
| PpuMI | RGGWCCY | 1 cut(s) | 1237 |
| PscI | ACATGT | 1 cut(s) | 2510 |
| Psp124BI | GAGCTC | 1 cut(s) | 2568 |
| Psp5II | RGGWCCY | 1 cut(s) | 1237 |
| Psp6I | CCWGG | 2 cut(s) | 727, 1024 |
| PspFI | CCCAGC | 1 cut(s) | 389 |
| PspGI | CCWGG | 2 cut(s) | 727, 1024 |
| PspN4I | GGNNCC | 3 cut(s) | 1238, 1775, 2076 |
| PspPI | GGNCC | 2 cut(s) | 1237, 2855 |
| PspPPI | RGGWCCY | 1 cut(s) | 1237 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1107, 1139 |
| PstI | CTGCAG | 1 cut(s) | 3015 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1895 |
| PsuI | RGATCY | 5 cut(s) | 1957, 2659, 3223, 3253, 3277 |
| PsyI | GACNNNGTC | 1 cut(s) | 1186 |
| PvuI | CGATCG | 1 cut(s) | 43 |
| PvuII | CAGCTG | 2 cut(s) | 1141, 1892 |
| RgaI | GCGATCGC | 1 cut(s) | 43 |
| RsaI | GTAC | 3 cut(s) | 191, 2889, 3325 |
| RsaNI | GTAC | 3 cut(s) | 190, 2888, 3324 |
| RseI | CAYNNNNRTG | 2 cut(s) | 662, 3119 |
| SacI | GAGCTC | 1 cut(s) | 2568 |
| SapI | GCTCTTC | 1 cut(s) | 2573 |
| Sau96I | GGNCC | 2 cut(s) | 1237, 2855 |
| SchI | GAGTC | 4 cut(s) | 214, 491, 1616, 2290 |
| ScrFI | CCNGG | 4 cut(s) | 321, 729, 1026, 1757 |
| SduI | GDGCHC | 4 cut(s) | 701, 1778, 2485, 2568 |
| SfaAI | GCGATCGC | 1 cut(s) | 43 |
| SfcI | CTRYAG | 1 cut(s) | 3011 |
| SfuI | TTCGAA | 1 cut(s) | 227 |
| SgfI | GCGATCGC | 1 cut(s) | 43 |
| SinI | GGWCC | 1 cut(s) | 1237 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 662, 3119 |
| SmlI | CTYRAG | 3 cut(s) | 1604, 2063, 2342 |
| SmoI | CTYRAG | 3 cut(s) | 1604, 2063, 2342 |
| SseBI | AGGCCT | 3 cut(s) | 406, 565, 2946 |
| SsiI | CCGC | 9 cut(s) | 28, 34, 37, 46, 478, 652, 739, 1645, 3124 |
| SspI | AATATT | 2 cut(s) | 498, 1084 |
| SspMI | CTAG | 7 cut(s) | 285, 312, 444, 702, 2456, 3071, 3281 |
| SstI | GAGCTC | 1 cut(s) | 2568 |
| StuI | AGGCCT | 3 cut(s) | 406, 565, 2946 |
| StyD4I | CCNGG | 4 cut(s) | 319, 727, 1024, 1755 |
| StyI | CCWWGG | 5 cut(s) | 284, 364, 401, 2220, 2749 |
| TaaI | ACNGT | 5 cut(s) | 1251, 1294, 1490, 2143, 2746 |
| TaiI | ACGT | 4 cut(s) | 191, 400, 2053, 2426 |
| TaqI | TCGA | 7 cut(s) | 111, 227, 750, 1389, 2108, 2247, 2812 |
| TatI | WGTACW | 1 cut(s) | 2887 |
| TauI | GCSGC | 2 cut(s) | 39, 48 |
| TfiI | GAWTC | 6 cut(s) | 200, 239, 269, 2777, 2876, 3074 |
| TscAI | CASTG | 4 cut(s) | 1382, 1549, 2826, 3015 |
| TseFI | GTSAC | 3 cut(s) | 356, 1490, 2627 |
| TseI | GCWGC | 8 cut(s) | 622, 1001, 1592, 1634, 1796, 1892, 2603, 3044 |
| Tsp45I | GTSAC | 3 cut(s) | 356, 1490, 2627 |
| TspGWI | ACGGA | 3 cut(s) | 650, 1601, 2153 |
| TspRI | CASTG | 4 cut(s) | 1382, 1549, 2826, 3015 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1186 |
| VneI | GTGCAC | 1 cut(s) | 697 |
| VpaK11BI | GGWCC | 1 cut(s) | 1237 |
| XapI | RAATTY | 5 cut(s) | 781, 2622, 2921, 3161, 3368 |
| XbaI | TCTAGA | 1 cut(s) | 311 |
| XceI | RCATGY | 4 cut(s) | 2514, 2547, 2672, 3274 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1253, 1973 |
| XmaJI | CCTAGG | 1 cut(s) | 284 |
| XmiI | GTMKAC | 1 cut(s) | 1190 |
| XmnI | GAANNNNTTC | 2 cut(s) | 861, 2946 |
| XspI | CTAG | 7 cut(s) | 285, 312, 444, 702, 2456, 3071, 3281 |
| Zsp2I | ATGCAT | 2 cut(s) | 1218, 2674 |