TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 205 | 4.2e-55 | TIR domain |
| TIR_2 | PF13676 | 25 - 123 | 5.2e-17 | TIR domain |
| NB-ARC | PF00931 | 219 - 369 | 4.9e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 438 - 508 | 1.4e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| C-JID | PF20160 | 989 - 1130 | 9.7e-08 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 513 |
| AccB1I | GGYRCC | 1 cut(s) | 282 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2150 |
| AccBSI | CCGCTC | 1 cut(s) | 2894 |
| AccII | CGCG | 3 cut(s) | 132, 1527, 2519 |
| AccIII | TCCGGA | 1 cut(s) | 3034 |
| AciI | CCGC | 6 cut(s) | 103, 130, 2196, 2393, 2517, 2892 |
| AclWI | GGATC | 7 cut(s) | 356, 369, 1911, 2709, 2909, 3045, 3098 |
| AcoI | YGGCCR | 2 cut(s) | 480, 2889 |
| AcuI | CTGAAG | 2 cut(s) | 420, 2327 |
| AcvI | CACGTG | 1 cut(s) | 2189 |
| AdeI | CACNNNGTG | 1 cut(s) | 282 |
| AfaI | GTAC | 6 cut(s) | 143, 1231, 1830, 2290, 3052, 3377 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 445, 720, 1118, 1864, 2150, 2290, 2898 |
| AflII | CTTAAG | 1 cut(s) | 2348 |
| AflIII | ACRYGT | 3 cut(s) | 550, 826, 1006 |
| AhlI | ACTAGT | 1 cut(s) | 835 |
| AjnI | CCWGG | 4 cut(s) | 285, 1534, 2965, 3267 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1310, 1342, 2217, 2249 |
| Alw21I | GWGCWC | 4 cut(s) | 14, 213, 1014, 1080 |
| Alw26I | GTCTC | 7 cut(s) | 121, 1925, 2038, 2276, 2285, 2316, 2369 |
| AlwI | GGATC | 7 cut(s) | 356, 369, 1911, 2709, 2909, 3045, 3098 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2384 |
| Ama87I | CYCGRG | 3 cut(s) | 2102, 2284, 3116 |
| Aor13HI | TCCGGA | 1 cut(s) | 3034 |
| AoxI | GGCC | 5 cut(s) | 21, 480, 2236, 2437, 2889 |
| ApaI | GGGCCC | 1 cut(s) | 2441 |
| ApeKI | GCWGC | 4 cut(s) | 390, 1545, 2819, 3282 |
| AseI | ATTAAT | 1 cut(s) | 3321 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1322, 1509, 2869 |
| AspS9I | GGNCC | 5 cut(s) | 21, 2002, 2193, 2437, 2438 |
| AsuC2I | CCSGG | 2 cut(s) | 2285, 2286 |
| AsuHPI | GGTGA | 4 cut(s) | 104, 249, 980, 1366 |
| AsuII | TTCGAA | 3 cut(s) | 805, 2648, 2928 |
| AvaI | CYCGRG | 3 cut(s) | 2102, 2284, 3116 |
| AvaII | GGWCC | 2 cut(s) | 2002, 2193 |
| AxyI | CCTNAGG | 1 cut(s) | 654 |
| BaeGI | GKGCMC | 1 cut(s) | 2441 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 125, 158 |
| BalI | TGGCCA | 1 cut(s) | 482 |
| BamHI | GGATCC | 1 cut(s) | 361 |
| BanI | GGYRCC | 1 cut(s) | 282 |
| BanII | GRGCYC | 4 cut(s) | 213, 1080, 2441, 3367 |
| BauI | CACGAG | 1 cut(s) | 33 |
| BbrPI | CACGTG | 1 cut(s) | 2189 |
| BbsI | GAAGAC | 4 cut(s) | 102, 1532, 1879, 2615 |
| Bbv12I | GWGCWC | 4 cut(s) | 14, 213, 1014, 1080 |
| BbvI | GCAGC | 4 cut(s) | 402, 1557, 2806, 3269 |
| BceAI | ACGGC | 2 cut(s) | 1533, 2307 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 94, 128 |
| BciT130I | CCWGG | 4 cut(s) | 287, 1536, 2967, 3269 |
| BciVI | GTATCC | 2 cut(s) | 1791, 3265 |
| BclI | TGATCA | 1 cut(s) | 1453 |
| BcnI | CCSGG | 2 cut(s) | 2285, 2286 |
| BcoDI | GTCTC | 7 cut(s) | 121, 1925, 2038, 2276, 2285, 2316, 2369 |
| BcuI | ACTAGT | 1 cut(s) | 835 |
| BfmI | CTRYAG | 2 cut(s) | 137, 2358 |
| BfrI | CTTAAG | 1 cut(s) | 2348 |
| BfuI | GTATCC | 2 cut(s) | 1791, 3265 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2445 |
| BisI | GCNGC | 5 cut(s) | 391, 1546, 2820, 2892, 3283 |
| BlpI | GCTNAGC | 1 cut(s) | 411 |
| BlsI | GCNGC | 5 cut(s) | 392, 1547, 2821, 2893, 3284 |
| Bme1390I | CCNGG | 6 cut(s) | 287, 1536, 2285, 2286, 2967, 3269 |
| Bme18I | GGWCC | 2 cut(s) | 2002, 2193 |
| BmeT110I | CYCGRG | 3 cut(s) | 2102, 2284, 3116 |
| BmgT120I | GGNCC | 5 cut(s) | 21, 2002, 2193, 2437, 2438 |
| BmiI | GGNNCC | 6 cut(s) | 284, 363, 1533, 2194, 2439, 3123 |
| BmrFI | CCNGG | 6 cut(s) | 287, 1536, 2285, 2286, 2967, 3269 |
| BmrI | ACTGGG | 1 cut(s) | 52 |
| BmsI | GCATC | 9 cut(s) | 490, 1057, 1285, 1464, 1594, 1827, 2116, 2327, 2790 |
| BmuI | ACTGGG | 1 cut(s) | 52 |
| BpiI | GAAGAC | 4 cut(s) | 102, 1532, 1879, 2615 |
| BpmI | CTGGAG | 3 cut(s) | 189, 1853, 2258 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2879, 2895 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 411 |
| Bpu14I | TTCGAA | 3 cut(s) | 805, 2648, 2928 |
| BpuEI | CTTGAG | 5 cut(s) | 100, 235, 1094, 1777, 1982 |
| BpuMI | CCSGG | 2 cut(s) | 2285, 2286 |
| Bsa29I | ATCGAT | 3 cut(s) | 798, 2053, 3198 |
| BsaAI | YACGTR | 4 cut(s) | 2081, 2189, 2258, 2816 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2538, 3194 |
| BsaI | GGTCTC | 1 cut(s) | 1925 |
| BsaJI | CCNNGG | 3 cut(s) | 315, 2284, 2495 |
| BsaWI | WCCGGW | 4 cut(s) | 323, 2698, 3034, 3092 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 8, 38, 2366, 2396, 2688, 2718 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 445, 720, 1118, 1864, 2150, 2290, 2898 |
| Bse118I | RCCGGY | 2 cut(s) | 144, 343 |
| Bse1I | ACTGG | 4 cut(s) | 58, 1836, 2248, 2990 |
| Bse21I | CCTNAGG | 1 cut(s) | 654 |
| Bse3DI | GCAATG | 2 cut(s) | 1332, 2013 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2538, 3194 |
| BseAI | TCCGGA | 1 cut(s) | 3034 |
| BseBI | CCWGG | 4 cut(s) | 287, 1536, 2967, 3269 |
| BseCI | ATCGAT | 3 cut(s) | 798, 2053, 3198 |
| BseDI | CCNNGG | 3 cut(s) | 315, 2284, 2495 |
| BseJI | GATNNNNATC | 2 cut(s) | 2538, 3194 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 445, 720, 1118, 1864, 2150, 2290, 2898 |
| BseMI | GCAATG | 2 cut(s) | 1332, 2013 |
| BseMII | CTCAG | 5 cut(s) | 640, 645, 753, 2193, 2909 |
| BseNI | ACTGG | 4 cut(s) | 58, 1836, 2248, 2990 |
| BseRI | GAGGAG | 6 cut(s) | 16, 671, 1232, 1544, 1979, 3389 |
| BseSI | GKGCMC | 1 cut(s) | 2441 |
| BseXI | GCAGC | 4 cut(s) | 402, 1557, 2806, 3269 |
| Bsh1236I | CGCG | 3 cut(s) | 132, 1527, 2519 |
| Bsh1285I | CGRYCG | 2 cut(s) | 175, 3256 |
| BshFI | GGCC | 5 cut(s) | 23, 482, 2238, 2439, 2891 |
| BshNI | GGYRCC | 1 cut(s) | 282 |
| BshVI | ATCGAT | 3 cut(s) | 798, 2053, 3198 |
| BsiEI | CGRYCG | 2 cut(s) | 175, 3256 |
| BsiHKAI | GWGCWC | 4 cut(s) | 14, 213, 1014, 1080 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2102, 2284, 3116 |
| BsiSI | CCGG | 8 cut(s) | 145, 324, 344, 1858, 2285, 2699, 3035, 3093 |
| BslFI | GGGAC | 2 cut(s) | 1718, 2206 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 445, 720, 1118, 1864, 2150, 2290, 2898 |
| BsmAI | GTCTC | 7 cut(s) | 121, 1925, 2038, 2276, 2285, 2316, 2369 |
| BsmBI | CGTCTC | 1 cut(s) | 121 |
| BsmFI | GGGAC | 2 cut(s) | 1718, 2206 |
| BsmI | GAATGC | 2 cut(s) | 1337, 2129 |
| BsnI | GGCC | 5 cut(s) | 23, 482, 2238, 2439, 2891 |
| Bso31I | GGTCTC | 1 cut(s) | 1925 |
| BsoBI | CYCGRG | 3 cut(s) | 2102, 2284, 3116 |
| Bsp119I | TTCGAA | 3 cut(s) | 805, 2648, 2928 |
| Bsp120I | GGGCCC | 1 cut(s) | 2437 |
| Bsp1286I | GDGCHC | 6 cut(s) | 14, 213, 1014, 1080, 2441, 3367 |
| Bsp13I | TCCGGA | 1 cut(s) | 3034 |
| Bsp1407I | TGTACA | 1 cut(s) | 3050 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 411 |
| Bsp19I | CCATGG | 1 cut(s) | 315 |
| Bsp68I | TCGCGA | 1 cut(s) | 1527 |
| BspACI | CCGC | 6 cut(s) | 103, 130, 2196, 2393, 2517, 2892 |
| BspANI | GGCC | 5 cut(s) | 23, 482, 2238, 2439, 2891 |
| BspCNI | CTCAG | 5 cut(s) | 639, 646, 754, 2194, 2908 |
| BspDI | ATCGAT | 3 cut(s) | 798, 2053, 3198 |
| BspEI | TCCGGA | 1 cut(s) | 3034 |
| BspFNI | CGCG | 3 cut(s) | 132, 1527, 2519 |
| BspLI | GGNNCC | 6 cut(s) | 284, 363, 1533, 2194, 2439, 3123 |
| BspMAI | CTGCAG | 1 cut(s) | 141 |
| BspPI | GGATC | 7 cut(s) | 356, 369, 1911, 2709, 2909, 3045, 3098 |
| BspQI | GCTCTTC | 1 cut(s) | 3347 |
| BspT104I | TTCGAA | 3 cut(s) | 805, 2648, 2928 |
| BspT107I | GGYRCC | 1 cut(s) | 282 |
| BspTI | CTTAAG | 1 cut(s) | 2348 |
| BspTNI | GGTCTC | 1 cut(s) | 1925 |
| BsrBI | CCGCTC | 1 cut(s) | 2894 |
| BsrDI | GCAATG | 2 cut(s) | 1332, 2013 |
| BsrFI | RCCGGY | 2 cut(s) | 144, 343 |
| BsrGI | TGTACA | 1 cut(s) | 3050 |
| BsrI | ACTGG | 4 cut(s) | 58, 1836, 2248, 2990 |
| BssAI | RCCGGY | 2 cut(s) | 144, 343 |
| BssECI | CCNNGG | 3 cut(s) | 315, 2284, 2495 |
| BssSI | CACGAG | 1 cut(s) | 33 |
| BssT1I | CCWWGG | 2 cut(s) | 315, 2495 |
| Bst2BI | CACGAG | 1 cut(s) | 33 |
| Bst2UI | CCWGG | 4 cut(s) | 287, 1536, 2967, 3269 |
| Bst4CI | ACNGT | 6 cut(s) | 1623, 1991, 2040, 2380, 2942, 3022 |
| Bst6I | CTCTTC | 3 cut(s) | 1638, 1800, 3347 |
| BstAFI | CTTAAG | 1 cut(s) | 2348 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2640 |
| BstAUI | TGTACA | 1 cut(s) | 3050 |
| BstBAI | YACGTR | 4 cut(s) | 2081, 2189, 2258, 2816 |
| BstBI | TTCGAA | 3 cut(s) | 805, 2648, 2928 |
| BstC8I | GCNNGC | 3 cut(s) | 1824, 2397, 2632 |
| BstDEI | CTNAG | 9 cut(s) | 411, 626, 654, 762, 1244, 2202, 2722, 2879, 2895 |
| BstDSI | CCRYGG | 1 cut(s) | 315 |
| BstFNI | CGCG | 3 cut(s) | 132, 1527, 2519 |
| BstMAI | GTCTC | 7 cut(s) | 121, 1925, 2038, 2276, 2285, 2316, 2369 |
| BstMCI | CGRYCG | 2 cut(s) | 175, 3256 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 145, 1051, 1819, 2401, 2445, 2640, 3119 |
| BstNI | CCWGG | 4 cut(s) | 287, 1536, 2967, 3269 |
| BstNSI | RCATGY | 1 cut(s) | 830 |
| BstSCI | CCNGG | 6 cut(s) | 285, 1534, 2283, 2284, 2965, 3267 |
| BstSFI | CTRYAG | 2 cut(s) | 137, 2358 |
| BstSLI | GKGCMC | 1 cut(s) | 2441 |
| BstUI | CGCG | 3 cut(s) | 132, 1527, 2519 |
| BstV1I | GCAGC | 4 cut(s) | 402, 1557, 2806, 3269 |
| BstV2I | GAAGAC | 4 cut(s) | 102, 1532, 1879, 2615 |
| BstX2I | RGATCY | 5 cut(s) | 361, 1903, 2701, 2901, 3103 |
| BstYI | RGATCY | 5 cut(s) | 361, 1903, 2701, 2901, 3103 |
| Bsu15I | ATCGAT | 3 cut(s) | 798, 2053, 3198 |
| Bsu36I | CCTNAGG | 1 cut(s) | 654 |
| BsuI | GTATCC | 2 cut(s) | 1791, 3265 |
| BsuRI | GGCC | 5 cut(s) | 23, 482, 2238, 2439, 2891 |
| BsuTUI | ATCGAT | 3 cut(s) | 798, 2053, 3198 |
| BtgI | CCRYGG | 1 cut(s) | 315 |
| BtsIMutI | CAGTG | 3 cut(s) | 65, 1069, 2385 |
| BtuMI | TCGCGA | 1 cut(s) | 1527 |
| Cac8I | GCNNGC | 3 cut(s) | 1824, 2397, 2632 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2384 |
| Cfr10I | RCCGGY | 2 cut(s) | 144, 343 |
| Cfr13I | GGNCC | 5 cut(s) | 21, 2002, 2193, 2437, 2438 |
| Cfr9I | CCCGGG | 1 cut(s) | 2284 |
| ClaI | ATCGAT | 3 cut(s) | 798, 2053, 3198 |
| CseI | GACGC | 1 cut(s) | 776 |
| Csp6I | GTAC | 6 cut(s) | 142, 1230, 1829, 2289, 3051, 3376 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2314, 2349 |
| CviAII | CATG | 7 cut(s) | 316, 416, 827, 1478, 1500, 3048, 3336 |
| CviQI | GTAC | 6 cut(s) | 142, 1230, 1829, 2289, 3051, 3376 |
| DdeI | CTNAG | 9 cut(s) | 411, 626, 654, 762, 1244, 2202, 2722, 2879, 2895 |
| DraI | TTTAAA | 2 cut(s) | 1980, 2301 |
| DraIII | CACNNNGTG | 1 cut(s) | 282 |
| EaeI | YGGCCR | 2 cut(s) | 480, 2889 |
| Eam1104I | CTCTTC | 3 cut(s) | 1638, 1800, 3347 |
| EarI | CTCTTC | 3 cut(s) | 1638, 1800, 3347 |
| Ecl136II | GAGCTC | 2 cut(s) | 211, 1078 |
| Eco130I | CCWWGG | 2 cut(s) | 315, 2495 |
| Eco24I | GRGCYC | 4 cut(s) | 213, 1080, 2441, 3367 |
| Eco31I | GGTCTC | 1 cut(s) | 1925 |
| Eco47I | GGWCC | 2 cut(s) | 2002, 2193 |
| Eco53kI | GAGCTC | 2 cut(s) | 211, 1078 |
| Eco57I | CTGAAG | 2 cut(s) | 420, 2327 |
| Eco72I | CACGTG | 1 cut(s) | 2189 |
| Eco81I | CCTNAGG | 1 cut(s) | 654 |
| Eco88I | CYCGRG | 3 cut(s) | 2102, 2284, 3116 |
| EcoICRI | GAGCTC | 2 cut(s) | 211, 1078 |
| EcoO109I | RGGNCCY | 2 cut(s) | 21, 2438 |
| EcoRI | GAATTC | 3 cut(s) | 336, 1251, 1761 |
| EcoRII | CCWGG | 4 cut(s) | 285, 1534, 2965, 3267 |
| EcoT14I | CCWWGG | 2 cut(s) | 315, 2495 |
| EcoT22I | ATGCAT | 1 cut(s) | 1479 |
| EcoT38I | GRGCYC | 4 cut(s) | 213, 1080, 2441, 3367 |
| ErhI | CCWWGG | 2 cut(s) | 315, 2495 |
| Esp3I | CGTCTC | 1 cut(s) | 121 |
| FaeI | CATG | 7 cut(s) | 319, 419, 830, 1481, 1503, 3051, 3339 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1310, 1342, 1556, 1588 |
| FaqI | GGGAC | 2 cut(s) | 1718, 2206 |
| FatI | CATG | 7 cut(s) | 315, 415, 826, 1477, 1499, 3047, 3335 |
| FauI | CCCGC | 1 cut(s) | 110 |
| FauNDI | CATATG | 1 cut(s) | 1769 |
| FbaI | TGATCA | 1 cut(s) | 1453 |
| Fnu4HI | GCNGC | 5 cut(s) | 391, 1546, 2820, 2892, 3283 |
| FriOI | GRGCYC | 4 cut(s) | 213, 1080, 2441, 3367 |
| Fsp4HI | GCNGC | 5 cut(s) | 391, 1546, 2820, 2892, 3283 |
| GluI | GCNGC | 5 cut(s) | 391, 1546, 2820, 2892, 3283 |
| GsuI | CTGGAG | 3 cut(s) | 189, 1853, 2258 |
| HaeIII | GGCC | 5 cut(s) | 23, 482, 2238, 2439, 2891 |
| HapII | CCGG | 8 cut(s) | 145, 324, 344, 1858, 2285, 2699, 3035, 3093 |
| HgaI | GACGC | 1 cut(s) | 776 |
| Hin1II | CATG | 7 cut(s) | 319, 419, 830, 1481, 1503, 3051, 3339 |
| HindIII | AAGCTT | 3 cut(s) | 2030, 2345, 2651 |
| HpaII | CCGG | 8 cut(s) | 145, 324, 344, 1858, 2285, 2699, 3035, 3093 |
| HphI | GGTGA | 4 cut(s) | 104, 249, 980, 1366 |
| Hpy166II | GTNNAC | 3 cut(s) | 791, 1631, 2023 |
| Hpy8I | GTNNAC | 3 cut(s) | 791, 1631, 2023 |
| Hpy99I | CGWCG | 4 cut(s) | 374, 1019, 2409, 2561 |
| HpyCH4III | ACNGT | 6 cut(s) | 1623, 1991, 2040, 2380, 2942, 3022 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 145, 1051, 1819, 2401, 2445, 2640, 3119 |
| HpyF3I | CTNAG | 9 cut(s) | 411, 626, 654, 762, 1244, 2202, 2722, 2879, 2895 |
| Hsp92II | CATG | 7 cut(s) | 319, 419, 830, 1481, 1503, 3051, 3339 |
| Kpn2I | TCCGGA | 1 cut(s) | 3034 |
| Ksp22I | TGATCA | 1 cut(s) | 1453 |
| LguI | GCTCTTC | 1 cut(s) | 3347 |
| LmnI | GCTCC | 5 cut(s) | 191, 387, 655, 1531, 3127 |
| Lsp1109I | GCAGC | 4 cut(s) | 402, 1557, 2806, 3269 |
| LweI | GCATC | 9 cut(s) | 490, 1057, 1285, 1464, 1594, 1827, 2116, 2327, 2790 |
| MaeIII | GTNAC | 8 cut(s) | 431, 856, 926, 988, 1085, 1239, 1985, 3160 |
| MbiI | CCGCTC | 1 cut(s) | 2894 |
| MfeI | CAATTG | 2 cut(s) | 2220, 2824 |
| MflI | RGATCY | 5 cut(s) | 361, 1903, 2701, 2901, 3103 |
| MhlI | GDGCHC | 6 cut(s) | 14, 213, 1014, 1080, 2441, 3367 |
| MlsI | TGGCCA | 1 cut(s) | 482 |
| MluNI | TGGCCA | 1 cut(s) | 482 |
| MlyI | GAGTC | 7 cut(s) | 320, 1247, 1514, 1922, 2287, 2473, 3145 |
| MmeI | TCCRAC | 3 cut(s) | 393, 589, 1286 |
| Mox20I | TGGCCA | 1 cut(s) | 482 |
| Mph1103I | ATGCAT | 1 cut(s) | 1479 |
| MroI | TCCGGA | 1 cut(s) | 3034 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1322, 1509, 2869 |
| MscI | TGGCCA | 1 cut(s) | 482 |
| Msp20I | TGGCCA | 1 cut(s) | 482 |
| MspCI | CTTAAG | 1 cut(s) | 2348 |
| MspI | CCGG | 8 cut(s) | 145, 324, 344, 1858, 2285, 2699, 3035, 3093 |
| MspR9I | CCNGG | 6 cut(s) | 287, 1536, 2285, 2286, 2967, 3269 |
| MunI | CAATTG | 2 cut(s) | 2220, 2824 |
| Mva1269I | GAATGC | 2 cut(s) | 1337, 2129 |
| MvaI | CCWGG | 4 cut(s) | 287, 1536, 2967, 3269 |
| MvnI | CGCG | 3 cut(s) | 132, 1527, 2519 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 145, 1051, 1819, 2401, 2445, 2640, 3119 |
| NciI | CCSGG | 2 cut(s) | 2285, 2286 |
| NcoI | CCATGG | 1 cut(s) | 315 |
| NdeI | CATATG | 1 cut(s) | 1769 |
| NlaIII | CATG | 7 cut(s) | 319, 419, 830, 1481, 1503, 3051, 3339 |
| NlaIV | GGNNCC | 6 cut(s) | 284, 363, 1533, 2194, 2439, 3123 |
| NmuCI | GTSAC | 4 cut(s) | 926, 1085, 1239, 1985 |
| NruI | TCGCGA | 1 cut(s) | 1527 |
| NsiI | ATGCAT | 1 cut(s) | 1479 |
| NspI | RCATGY | 1 cut(s) | 830 |
| NspV | TTCGAA | 3 cut(s) | 805, 2648, 2928 |
| PaeR7I | CTCGAG | 2 cut(s) | 2102, 3116 |
| PciI | ACATGT | 1 cut(s) | 826 |
| PciSI | GCTCTTC | 1 cut(s) | 3347 |
| PctI | GAATGC | 2 cut(s) | 1337, 2129 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1322, 1509, 2869 |
| PflFI | GACNNNGTC | 1 cut(s) | 2380 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2150 |
| PfoI | TCCNGGA | 2 cut(s) | 2965, 3267 |
| PkrI | GCNGC | 5 cut(s) | 392, 1547, 2821, 2893, 3284 |
| PleI | GAGTC | 7 cut(s) | 319, 1246, 1514, 1921, 2286, 2472, 3145 |
| PmaCI | CACGTG | 1 cut(s) | 2189 |
| PmlI | CACGTG | 1 cut(s) | 2189 |
| PpsI | GAGTC | 7 cut(s) | 319, 1246, 1514, 1921, 2286, 2472, 3145 |
| Ppu21I | YACGTR | 4 cut(s) | 2081, 2189, 2258, 2816 |
| PscI | ACATGT | 1 cut(s) | 826 |
| PshBI | ATTAAT | 1 cut(s) | 3321 |
| PsiI | TTATAA | 1 cut(s) | 513 |
| Psp124BI | GAGCTC | 2 cut(s) | 213, 1080 |
| Psp6I | CCWGG | 4 cut(s) | 285, 1534, 2965, 3267 |
| PspCI | CACGTG | 1 cut(s) | 2189 |
| PspGI | CCWGG | 4 cut(s) | 285, 1534, 2965, 3267 |
| PspN4I | GGNNCC | 6 cut(s) | 284, 363, 1533, 2194, 2439, 3123 |
| PspOMI | GGGCCC | 1 cut(s) | 2437 |
| PspPI | GGNCC | 5 cut(s) | 21, 2002, 2193, 2437, 2438 |
| PstI | CTGCAG | 1 cut(s) | 141 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2384 |
| PsuI | RGATCY | 5 cut(s) | 361, 1903, 2701, 2901, 3103 |
| PsyI | GACNNNGTC | 1 cut(s) | 2380 |
| RruI | TCGCGA | 1 cut(s) | 1527 |
| RsaI | GTAC | 6 cut(s) | 143, 1231, 1830, 2290, 3052, 3377 |
| RsaNI | GTAC | 6 cut(s) | 142, 1230, 1829, 2289, 3051, 3376 |
| SacI | GAGCTC | 2 cut(s) | 213, 1080 |
| SapI | GCTCTTC | 1 cut(s) | 3347 |
| SatI | GCNGC | 5 cut(s) | 391, 1546, 2820, 2892, 3283 |
| Sau96I | GGNCC | 5 cut(s) | 21, 2002, 2193, 2437, 2438 |
| SchI | GAGTC | 7 cut(s) | 320, 1247, 1514, 1922, 2287, 2473, 3145 |
| ScrFI | CCNGG | 6 cut(s) | 287, 1536, 2285, 2286, 2967, 3269 |
| SduI | GDGCHC | 6 cut(s) | 14, 213, 1014, 1080, 2441, 3367 |
| SfaNI | GCATC | 9 cut(s) | 490, 1057, 1285, 1464, 1594, 1827, 2116, 2327, 2790 |
| SfcI | CTRYAG | 2 cut(s) | 137, 2358 |
| Sfr274I | CTCGAG | 2 cut(s) | 2102, 3116 |
| SfuI | TTCGAA | 3 cut(s) | 805, 2648, 2928 |
| SinI | GGWCC | 2 cut(s) | 2002, 2193 |
| SlaI | CTCGAG | 2 cut(s) | 2102, 3116 |
| SmaI | CCCGGG | 1 cut(s) | 2286 |
| SmlI | CTYRAG | 8 cut(s) | 79, 214, 1073, 1756, 1961, 2102, 2348, 3116 |
| SmoI | CTYRAG | 8 cut(s) | 79, 214, 1073, 1756, 1961, 2102, 2348, 3116 |
| SpeI | ACTAGT | 1 cut(s) | 835 |
| SsiI | CCGC | 6 cut(s) | 103, 130, 2196, 2393, 2517, 2892 |
| SspI | AATATT | 2 cut(s) | 1388, 2868 |
| SstI | GAGCTC | 2 cut(s) | 213, 1080 |
| StyD4I | CCNGG | 6 cut(s) | 285, 1534, 2283, 2284, 2965, 3267 |
| StyI | CCWWGG | 2 cut(s) | 315, 2495 |
| TaaI | ACNGT | 6 cut(s) | 1623, 1991, 2040, 2380, 2942, 3022 |
| TaqII | GACCGA | 2 cut(s) | 189, 3242 |
| TatI | WGTACW | 3 cut(s) | 1229, 1828, 3050 |
| TauI | GCSGC | 1 cut(s) | 2894 |
| TscAI | CASTG | 3 cut(s) | 65, 1069, 2385 |
| TseFI | GTSAC | 4 cut(s) | 926, 1085, 1239, 1985 |
| TseI | GCWGC | 4 cut(s) | 390, 1545, 2819, 3282 |
| Tsp45I | GTSAC | 4 cut(s) | 926, 1085, 1239, 1985 |
| TspDTI | ATGAA | 8 cut(s) | 306, 432, 2167, 2177, 2205, 2435, 2862, 3003 |
| TspGWI | ACGGA | 3 cut(s) | 1330, 1601, 2496 |
| TspMI | CCCGGG | 1 cut(s) | 2284 |
| TspRI | CASTG | 3 cut(s) | 65, 1069, 2385 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2380 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2150 |
| Vha464I | CTTAAG | 1 cut(s) | 2348 |
| VpaK11BI | GGWCC | 2 cut(s) | 2002, 2193 |
| VspI | ATTAAT | 1 cut(s) | 3321 |
| XbaI | TCTAGA | 1 cut(s) | 949 |
| XceI | RCATGY | 1 cut(s) | 830 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 57, 283 |
| XhoI | CTCGAG | 2 cut(s) | 2102, 3116 |
| XmaI | CCCGGG | 1 cut(s) | 2284 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1322, 1509, 2869 |
| Zsp2I | ATGCAT | 1 cut(s) | 1479 |