TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 187 | 8.3e-54 | TIR domain |
| TIR_2 | PF13676 | 15 - 110 | 1.2e-14 | TIR domain |
| NB-ARC | PF00931 | 206 - 360 | 1.8e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 428 - 498 | 1.8e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 664 - 766 | 8.7e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 688 - 774 | 7.8e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 743 - 818 | 8.3e-10 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 844 - 965 | 8.4e-10 | Leucine-rich repeat region |
| C-JID | PF20160 | 977 - 1108 | 2.4e-16 | C-JID domain |
| WHD_eIF2D | PF25304 | 1323 - 1401 | 4.4e-28 | eIF2D winged helix domain |
| SWIB_eIF2D | PF26291 | 1447 - 1507 | 1.3e-11 | eIF2D, SWIB domain |
| SUI1 | PF01253 | 1553 - 1630 | 2.6e-20 | Translation initiation factor SUI1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 624 |
| Acc36I | ACCTGC | 2 cut(s) | 3528, 3647 |
| AccB1I | GGYRCC | 1 cut(s) | 2727 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1465, 2968, 3964 |
| AccBSI | CCGCTC | 1 cut(s) | 680 |
| AccI | GTMKAC | 2 cut(s) | 760, 3926 |
| AcoI | YGGCCR | 1 cut(s) | 2689 |
| AcuI | CTGAAG | 9 cut(s) | 459, 1034, 1110, 1554, 2723, 2927, 3914, 4065, 4764 |
| AcyI | GRCGYC | 1 cut(s) | 621 |
| AdeI | CACNNNGTG | 2 cut(s) | 4382, 4615 |
| AfaI | GTAC | 8 cut(s) | 339, 1161, 1207, 1954, 2878, 2954, 4353, 4786 |
| AflIII | ACRYGT | 4 cut(s) | 1546, 1803, 3787, 4354 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2806 |
| AjiI | CACGTC | 1 cut(s) | 1627 |
| AjnI | CCWGG | 8 cut(s) | 1504, 1975, 2998, 3504, 3957, 4455, 4804, 4919 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 546, 578, 924, 956 |
| AleI | CACNNNNGTG | 1 cut(s) | 2964 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1380, 1412, 3485, 3517 |
| Alw21I | GWGCWC | 2 cut(s) | 8, 17 |
| Alw26I | GTCTC | 3 cut(s) | 732, 1145, 4563 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2787 |
| AoxI | GGCC | 5 cut(s) | 2689, 3370, 3637, 4076, 4524 |
| ApaI | GGGCCC | 1 cut(s) | 3641 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2500, 2532 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1070, 1098, 1827, 2712, 4272 |
| AspLEI | GCGC | 1 cut(s) | 1515 |
| AspS9I | GGNCC | 6 cut(s) | 2973, 3050, 3424, 3637, 3638, 4524 |
| AsuC2I | CCSGG | 2 cut(s) | 2931, 4038 |
| AsuHPI | GGTGA | 8 cut(s) | 12, 2454, 2951, 3022, 3137, 3504, 3623, 3899 |
| AsuII | TTCGAA | 1 cut(s) | 2506 |
| AvaII | GGWCC | 3 cut(s) | 2973, 3050, 3424 |
| BaeGI | GKGCMC | 2 cut(s) | 2400, 3641 |
| BamHI | GGATCC | 3 cut(s) | 3685, 4738, 4884 |
| BanI | GGYRCC | 1 cut(s) | 2727 |
| BanII | GRGCYC | 3 cut(s) | 17, 3300, 3641 |
| BauI | CACGAG | 1 cut(s) | 699 |
| BbsI | GAAGAC | 3 cut(s) | 1441, 1542, 2246 |
| Bbv12I | GWGCWC | 2 cut(s) | 8, 17 |
| BbvCI | CCTCAGC | 1 cut(s) | 3864 |
| BccI | CCATC | 7 cut(s) | 1265, 2824, 3016, 3719, 3731, 4230, 4614 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1358, 1392, 2138, 2172, 2517, 2551 |
| BciT130I | CCWGG | 8 cut(s) | 1506, 1977, 3000, 3506, 3959, 4457, 4806, 4921 |
| BciVI | GTATCC | 2 cut(s) | 61, 1758 |
| BclI | TGATCA | 2 cut(s) | 1359, 3748 |
| BcnI | CCSGG | 2 cut(s) | 2931, 4038 |
| BcoDI | GTCTC | 3 cut(s) | 732, 1145, 4563 |
| BfmI | CTRYAG | 5 cut(s) | 606, 2985, 3555, 4152, 4551 |
| BfuAI | ACCTGC | 2 cut(s) | 3528, 3647 |
| BfuI | GTATCC | 2 cut(s) | 61, 1758 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1510 |
| BglII | AGATCT | 2 cut(s) | 1409, 4335 |
| BmcAI | AGTACT | 1 cut(s) | 1161 |
| Bme18I | GGWCC | 3 cut(s) | 2973, 3050, 3424 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2806 |
| BmgBI | CACGTC | 1 cut(s) | 1627 |
| BmgT120I | GGNCC | 6 cut(s) | 2973, 3050, 3424, 3637, 3638, 4524 |
| BmrI | ACTGGG | 4 cut(s) | 1172, 1752, 2604, 3939 |
| BmuI | ACTGGG | 4 cut(s) | 1172, 1752, 2604, 3939 |
| BpiI | GAAGAC | 3 cut(s) | 1441, 1542, 2246 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 680, 712, 682, 714 |
| BpmI | CTGGAG | 2 cut(s) | 1632, 4841 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3864 |
| Bpu14I | TTCGAA | 1 cut(s) | 2506 |
| BpuEI | CTTGAG | 3 cut(s) | 559, 1949, 2248 |
| BpuMI | CCSGG | 2 cut(s) | 2931, 4038 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3942 |
| BsaHI | GRCGYC | 1 cut(s) | 621 |
| BsaI | GGTCTC | 1 cut(s) | 1145 |
| BsaJI | CCNNGG | 4 cut(s) | 26, 1975, 3120, 3957 |
| BsaWI | WCCGGW | 1 cut(s) | 4593 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1605, 1635, 1971, 2001 |
| Bse1I | ACTGG | 9 cut(s) | 1167, 1570, 1747, 2610, 3934, 4285, 4364, 4396, 4725 |
| Bse3DI | GCAATG | 4 cut(s) | 1308, 2744, 2888, 3998 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3942 |
| BseBI | CCWGG | 8 cut(s) | 1506, 1977, 3000, 3506, 3959, 4457, 4806, 4921 |
| BseDI | CCNNGG | 4 cut(s) | 26, 1975, 3120, 3957 |
| BseJI | GATNNNNATC | 1 cut(s) | 3942 |
| BseMI | GCAATG | 4 cut(s) | 1308, 2744, 2888, 3998 |
| BseMII | CTCAG | 5 cut(s) | 1596, 1773, 2670, 3855, 4323 |
| BseNI | ACTGG | 9 cut(s) | 1167, 1570, 1747, 2610, 3934, 4285, 4364, 4396, 4725 |
| BseRI | GAGGAG | 1 cut(s) | 15 |
| BseSI | GKGCMC | 2 cut(s) | 2400, 3641 |
| BseYI | CCCAGC | 1 cut(s) | 1765 |
| BsgI | GTGCAG | 1 cut(s) | 3827 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4310 |
| BshFI | GGCC | 5 cut(s) | 2691, 3372, 3639, 4078, 4526 |
| BshNI | GGYRCC | 1 cut(s) | 2727 |
| BsiEI | CGRYCG | 1 cut(s) | 4310 |
| BsiHKAI | GWGCWC | 2 cut(s) | 8, 17 |
| BsiSI | CCGG | 3 cut(s) | 2931, 4038, 4594 |
| BslFI | GGGAC | 1 cut(s) | 3410 |
| BsmAI | GTCTC | 3 cut(s) | 732, 1145, 4563 |
| BsmFI | GGGAC | 1 cut(s) | 3410 |
| BsmI | GAATGC | 4 cut(s) | 284, 1070, 1636, 2560 |
| BsnI | GGCC | 5 cut(s) | 2691, 3372, 3639, 4078, 4526 |
| Bso31I | GGTCTC | 1 cut(s) | 1145 |
| Bsp119I | TTCGAA | 1 cut(s) | 2506 |
| Bsp120I | GGGCCC | 1 cut(s) | 3637 |
| Bsp1286I | GDGCHC | 5 cut(s) | 8, 17, 2400, 3300, 3641 |
| Bsp1407I | TGTACA | 2 cut(s) | 1952, 4351 |
| BspANI | GGCC | 5 cut(s) | 2691, 3372, 3639, 4078, 4526 |
| BspCNI | CTCAG | 5 cut(s) | 1597, 1774, 2671, 3856, 4324 |
| BspHI | TCATGA | 1 cut(s) | 379 |
| BspMAI | CTGCAG | 2 cut(s) | 610, 3559 |
| BspMI | ACCTGC | 2 cut(s) | 3528, 3647 |
| BspQI | GCTCTTC | 1 cut(s) | 22 |
| BspT104I | TTCGAA | 1 cut(s) | 2506 |
| BspT107I | GGYRCC | 1 cut(s) | 2727 |
| BspTNI | GGTCTC | 1 cut(s) | 1145 |
| BsrBI | CCGCTC | 1 cut(s) | 680 |
| BsrDI | GCAATG | 4 cut(s) | 1308, 2744, 2888, 3998 |
| BsrGI | TGTACA | 2 cut(s) | 1952, 4351 |
| BsrI | ACTGG | 9 cut(s) | 1167, 1570, 1747, 2610, 3934, 4285, 4364, 4396, 4725 |
| BssECI | CCNNGG | 4 cut(s) | 26, 1975, 3120, 3957 |
| BssNI | GRCGYC | 1 cut(s) | 621 |
| BssSI | CACGAG | 1 cut(s) | 699 |
| BssT1I | CCWWGG | 1 cut(s) | 3120 |
| Bst2BI | CACGAG | 1 cut(s) | 699 |
| Bst2UI | CCWGG | 8 cut(s) | 1506, 1977, 3000, 3506, 3959, 4457, 4806, 4921 |
| Bst6I | CTCTTC | 6 cut(s) | 22, 927, 1053, 1177, 1281, 1286 |
| BstACI | GRCGYC | 1 cut(s) | 621 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 182, 4000 |
| BstAUI | TGTACA | 2 cut(s) | 1952, 4351 |
| BstBI | TTCGAA | 1 cut(s) | 2506 |
| BstC8I | GCNNGC | 7 cut(s) | 1315, 1511, 2047, 2735, 3996, 4397, 4602 |
| BstDEI | CTNAG | 8 cut(s) | 1605, 1782, 2582, 2679, 3664, 3864, 4332, 4573 |
| BstEII | GGTNACC | 1 cut(s) | 1082 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3419 |
| BstHHI | GCGC | 1 cut(s) | 1515 |
| BstMAI | GTCTC | 3 cut(s) | 732, 1145, 4563 |
| BstMCI | CGRYCG | 1 cut(s) | 4310 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 12, 182, 1510, 1815, 3566, 3833, 4000, 4415 |
| BstNI | CCWGG | 8 cut(s) | 1506, 1977, 3000, 3506, 3959, 4457, 4806, 4921 |
| BstNSI | RCATGY | 7 cut(s) | 1317, 1550, 1807, 3405, 3791, 3973, 4358 |
| BstPI | GGTNACC | 1 cut(s) | 1082 |
| BstSFI | CTRYAG | 5 cut(s) | 606, 2985, 3555, 4152, 4551 |
| BstSLI | GKGCMC | 2 cut(s) | 2400, 3641 |
| BstV2I | GAAGAC | 3 cut(s) | 1441, 1542, 2246 |
| BstX2I | RGATCY | 5 cut(s) | 1409, 3685, 4335, 4738, 4884 |
| BstYI | RGATCY | 5 cut(s) | 1409, 3685, 4335, 4738, 4884 |
| BsuI | GTATCC | 2 cut(s) | 61, 1758 |
| BsuRI | GGCC | 5 cut(s) | 2691, 3372, 3639, 4078, 4526 |
| BtgZI | GCGATG | 1 cut(s) | 1383 |
| BtrI | CACGTC | 1 cut(s) | 1627 |
| BtsI | GCAGTG | 3 cut(s) | 99, 2269, 3552 |
| BveI | ACCTGC | 2 cut(s) | 3528, 3647 |
| Cac8I | GCNNGC | 7 cut(s) | 1315, 1511, 2047, 2735, 3996, 4397, 4602 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2787 |
| CciI | TCATGA | 1 cut(s) | 379 |
| CfoI | GCGC | 1 cut(s) | 1515 |
| Cfr13I | GGNCC | 6 cut(s) | 2973, 3050, 3424, 3637, 3638, 4524 |
| CsiI | ACCWGGT | 2 cut(s) | 4455, 4804 |
| Csp6I | GTAC | 8 cut(s) | 338, 1160, 1206, 1953, 2877, 2953, 4352, 4785 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 576, 611, 2038, 2073, 4408, 4443 |
| CviQI | GTAC | 8 cut(s) | 338, 1160, 1206, 1953, 2877, 2953, 4352, 4785 |
| DdeI | CTNAG | 8 cut(s) | 1605, 1782, 2582, 2679, 3664, 3864, 4332, 4573 |
| DraI | TTTAAA | 3 cut(s) | 1912, 3265, 4435 |
| DraIII | CACNNNGTG | 2 cut(s) | 4382, 4615 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2806 |
| EaeI | YGGCCR | 1 cut(s) | 2689 |
| Eam1104I | CTCTTC | 6 cut(s) | 22, 927, 1053, 1177, 1281, 1286 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2806 |
| EarI | CTCTTC | 6 cut(s) | 22, 927, 1053, 1177, 1281, 1286 |
| EciI | GGCGGA | 1 cut(s) | 3506 |
| Ecl136II | GAGCTC | 1 cut(s) | 15 |
| Eco130I | CCWWGG | 1 cut(s) | 3120 |
| Eco147I | AGGCCT | 2 cut(s) | 3372, 4078 |
| Eco24I | GRGCYC | 3 cut(s) | 17, 3300, 3641 |
| Eco31I | GGTCTC | 1 cut(s) | 1145 |
| Eco32I | GATATC | 2 cut(s) | 3238, 3433 |
| Eco47I | GGWCC | 3 cut(s) | 2973, 3050, 3424 |
| Eco53kI | GAGCTC | 1 cut(s) | 15 |
| Eco57I | CTGAAG | 9 cut(s) | 459, 1034, 1110, 1554, 2723, 2927, 3914, 4065, 4764 |
| Eco91I | GGTNACC | 1 cut(s) | 1082 |
| EcoICRI | GAGCTC | 1 cut(s) | 15 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3419 |
| EcoO109I | RGGNCCY | 4 cut(s) | 2973, 3424, 3637, 3638 |
| EcoO65I | GGTNACC | 1 cut(s) | 1082 |
| EcoRI | GAATTC | 3 cut(s) | 463, 1728, 3254 |
| EcoRII | CCWGG | 8 cut(s) | 1504, 1975, 2998, 3504, 3957, 4455, 4804, 4919 |
| EcoRV | GATATC | 2 cut(s) | 3238, 3433 |
| EcoT14I | CCWWGG | 1 cut(s) | 3120 |
| EcoT22I | ATGCAT | 2 cut(s) | 238, 284 |
| EcoT38I | GRGCYC | 3 cut(s) | 17, 3300, 3641 |
| ErhI | CCWWGG | 1 cut(s) | 3120 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1086, 1118, 2152, 2184, 3811, 3843 |
| FaqI | GGGAC | 1 cut(s) | 3410 |
| FauI | CCCGC | 3 cut(s) | 644, 3075, 3210 |
| FauNDI | CATATG | 1 cut(s) | 3721 |
| FbaI | TGATCA | 2 cut(s) | 1359, 3748 |
| FblI | GTMKAC | 2 cut(s) | 760, 3926 |
| FriOI | GRGCYC | 3 cut(s) | 17, 3300, 3641 |
| GlaI | GCGC | 1 cut(s) | 1514 |
| GsaI | CCCAGC | 1 cut(s) | 1769 |
| GsuI | CTGGAG | 2 cut(s) | 1632, 4841 |
| HaeIII | GGCC | 5 cut(s) | 2691, 3372, 3639, 4078, 4526 |
| HapII | CCGG | 3 cut(s) | 2931, 4038, 4594 |
| HhaI | GCGC | 1 cut(s) | 1515 |
| Hin1I | GRCGYC | 1 cut(s) | 621 |
| Hin6I | GCGC | 1 cut(s) | 1513 |
| HinP1I | GCGC | 1 cut(s) | 1513 |
| HincII | GTYRAC | 5 cut(s) | 1897, 1972, 2839, 3793, 3927 |
| HindII | GTYRAC | 5 cut(s) | 1897, 1972, 2839, 3793, 3927 |
| HindIII | AAGCTT | 5 cut(s) | 2102, 2315, 2363, 2735, 4746 |
| HpaI | GTTAAC | 1 cut(s) | 2839 |
| HpaII | CCGG | 3 cut(s) | 2931, 4038, 4594 |
| HphI | GGTGA | 8 cut(s) | 12, 2454, 2951, 3022, 3137, 3504, 3623, 3899 |
| Hpy188I | TCNGA | 9 cut(s) | 334, 820, 2602, 2742, 3715, 3814, 3894, 4414, 4759 |
| Hpy99I | CGWCG | 1 cut(s) | 1488 |
| HpyCH4IV | ACGT | 8 cut(s) | 245, 321, 621, 1626, 2520, 2778, 3129, 3795 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 12, 182, 1510, 1815, 3566, 3833, 4000, 4415 |
| HpyF3I | CTNAG | 8 cut(s) | 1605, 1782, 2582, 2679, 3664, 3864, 4332, 4573 |
| HpySE526I | ACGT | 8 cut(s) | 245, 321, 621, 1626, 2520, 2778, 3129, 3795 |
| Hsp92I | GRCGYC | 1 cut(s) | 621 |
| HspAI | GCGC | 1 cut(s) | 1513 |
| Ksp22I | TGATCA | 2 cut(s) | 1359, 3748 |
| KspAI | GTTAAC | 1 cut(s) | 2839 |
| LguI | GCTCTTC | 1 cut(s) | 22 |
| LmnI | GCTCC | 3 cut(s) | 833, 3303, 4577 |
| MabI | ACCWGGT | 2 cut(s) | 4455, 4804 |
| MaeII | ACGT | 8 cut(s) | 245, 321, 621, 1626, 2520, 2778, 3129, 3795 |
| MbiI | CCGCTC | 1 cut(s) | 680 |
| MfeI | CAATTG | 1 cut(s) | 189 |
| MflI | RGATCY | 5 cut(s) | 1409, 3685, 4335, 4738, 4884 |
| MhlI | GDGCHC | 5 cut(s) | 8, 17, 2400, 3300, 3641 |
| MlyI | GAGTC | 5 cut(s) | 734, 1592, 1616, 4202, 4625 |
| MmeI | TCCRAC | 4 cut(s) | 544, 1815, 2783, 3150 |
| Mph1103I | ATGCAT | 2 cut(s) | 238, 284 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1070, 1098, 1827, 2712, 4272 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2964, 3201, 3384, 3606 |
| MspA1I | CMGCKG | 2 cut(s) | 1769, 3250 |
| MspI | CCGG | 3 cut(s) | 2931, 4038, 4594 |
| MunI | CAATTG | 1 cut(s) | 189 |
| Mva1269I | GAATGC | 4 cut(s) | 284, 1070, 1636, 2560 |
| MvaI | CCWGG | 8 cut(s) | 1506, 1977, 3000, 3506, 3959, 4457, 4806, 4921 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 12, 182, 1510, 1815, 3566, 3833, 4000, 4415 |
| NciI | CCSGG | 2 cut(s) | 2931, 4038 |
| NdeI | CATATG | 1 cut(s) | 3721 |
| NmuCI | GTSAC | 6 cut(s) | 2460, 2516, 2585, 3125, 3611, 4615 |
| NsiI | ATGCAT | 2 cut(s) | 238, 284 |
| NspI | RCATGY | 7 cut(s) | 1317, 1550, 1807, 3405, 3791, 3973, 4358 |
| NspV | TTCGAA | 1 cut(s) | 2506 |
| OliI | CACNNNNGTG | 1 cut(s) | 2964 |
| PaeI | GCATGC | 1 cut(s) | 1317 |
| PagI | TCATGA | 1 cut(s) | 379 |
| PceI | AGGCCT | 2 cut(s) | 3372, 4078 |
| PciI | ACATGT | 4 cut(s) | 1546, 1803, 3787, 4354 |
| PciSI | GCTCTTC | 1 cut(s) | 22 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3836 |
| PctI | GAATGC | 4 cut(s) | 284, 1070, 1636, 2560 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1070, 1098, 1827, 2712, 4272 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1465, 2968, 3964 |
| PfoI | TCCNGGA | 1 cut(s) | 2929 |
| PleI | GAGTC | 5 cut(s) | 734, 1592, 1615, 4201, 4625 |
| PpsI | GAGTC | 5 cut(s) | 734, 1592, 1615, 4201, 4625 |
| PpuMI | RGGWCCY | 2 cut(s) | 2973, 3424 |
| PscI | ACATGT | 4 cut(s) | 1546, 1803, 3787, 4354 |
| Psp124BI | GAGCTC | 1 cut(s) | 17 |
| Psp5II | RGGWCCY | 2 cut(s) | 2973, 3424 |
| Psp6I | CCWGG | 8 cut(s) | 1504, 1975, 2998, 3504, 3957, 4455, 4804, 4919 |
| PspEI | GGTNACC | 1 cut(s) | 1082 |
| PspFI | CCCAGC | 1 cut(s) | 1765 |
| PspGI | CCWGG | 8 cut(s) | 1504, 1975, 2998, 3504, 3957, 4455, 4804, 4919 |
| PspOMI | GGGCCC | 1 cut(s) | 3637 |
| PspPI | GGNCC | 6 cut(s) | 2973, 3050, 3424, 3637, 3638, 4524 |
| PspPPI | RGGWCCY | 2 cut(s) | 2973, 3424 |
| PstI | CTGCAG | 2 cut(s) | 610, 3559 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2787 |
| PsuI | RGATCY | 5 cut(s) | 1409, 3685, 4335, 4738, 4884 |
| PvuII | CAGCTG | 1 cut(s) | 3250 |
| RsaI | GTAC | 8 cut(s) | 339, 1161, 1207, 1954, 2878, 2954, 4353, 4786 |
| RsaNI | GTAC | 8 cut(s) | 338, 1160, 1206, 1953, 2877, 2953, 4352, 4785 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2964, 3201, 3384, 3606 |
| SacI | GAGCTC | 1 cut(s) | 17 |
| SalI | GTCGAC | 1 cut(s) | 3925 |
| SapI | GCTCTTC | 1 cut(s) | 22 |
| Sau96I | GGNCC | 6 cut(s) | 2973, 3050, 3424, 3637, 3638, 4524 |
| ScaI | AGTACT | 1 cut(s) | 1161 |
| SchI | GAGTC | 5 cut(s) | 734, 1592, 1616, 4202, 4625 |
| SduI | GDGCHC | 5 cut(s) | 8, 17, 2400, 3300, 3641 |
| SexAI | ACCWGGT | 2 cut(s) | 4455, 4804 |
| SfcI | CTRYAG | 5 cut(s) | 606, 2985, 3555, 4152, 4551 |
| SfuI | TTCGAA | 1 cut(s) | 2506 |
| SinI | GGWCC | 3 cut(s) | 2973, 3050, 3424 |
| SmiI | ATTTAAAT | 1 cut(s) | 3265 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2964, 3201, 3384, 3606 |
| SmlI | CTYRAG | 3 cut(s) | 574, 1928, 2227 |
| SmoI | CTYRAG | 3 cut(s) | 574, 1928, 2227 |
| SphI | GCATGC | 1 cut(s) | 1317 |
| SseBI | AGGCCT | 2 cut(s) | 3372, 4078 |
| SspI | AATATT | 3 cut(s) | 312, 917, 1299 |
| SstI | GAGCTC | 1 cut(s) | 17 |
| StuI | AGGCCT | 2 cut(s) | 3372, 4078 |
| StyI | CCWWGG | 1 cut(s) | 3120 |
| SwaI | ATTTAAAT | 1 cut(s) | 3265 |
| TaiI | ACGT | 8 cut(s) | 248, 324, 624, 1629, 2523, 2781, 3132, 3798 |
| TaqI | TCGA | 8 cut(s) | 73, 993, 1189, 1342, 2148, 2506, 3472, 3926 |
| TaqII | GACCGA | 2 cut(s) | 4296, 4300 |
| TatI | WGTACW | 6 cut(s) | 1159, 1205, 1952, 2876, 4351, 4784 |
| TauI | GCSGC | 2 cut(s) | 839, 2733 |
| TseFI | GTSAC | 6 cut(s) | 2460, 2516, 2585, 3125, 3611, 4615 |
| Tsp45I | GTSAC | 6 cut(s) | 2460, 2516, 2585, 3125, 3611, 4615 |
| TspGWI | ACGGA | 4 cut(s) | 733, 1472, 1821, 3290 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1465, 2968, 3964 |
| VpaK11BI | GGWCC | 3 cut(s) | 2973, 3050, 3424 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3419 |
| XbaI | TCTAGA | 3 cut(s) | 1276, 1942, 2699 |
| XceI | RCATGY | 7 cut(s) | 1317, 1550, 1807, 3405, 3791, 3973, 4358 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 2766, 4486 |
| XmiI | GTMKAC | 2 cut(s) | 760, 3926 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1070, 1098, 1827, 2712, 4272 |
| ZraI | GACGTC | 1 cut(s) | 622 |
| ZrmI | AGTACT | 1 cut(s) | 1161 |
| Zsp2I | ATGCAT | 2 cut(s) | 238, 284 |