TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HSF_DNA-bind | PF00447 | 28 - 117 | 6.1e-31 | HSF-type DNA-binding |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 460 |
| Acc36I | ACCTGC | 1 cut(s) | 460 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 622 |
| AccBSI | CCGCTC | 1 cut(s) | 586 |
| AccII | CGCG | 4 cut(s) | 336, 383, 538, 915 |
| AccIII | TCCGGA | 2 cut(s) | 115, 277 |
| AclWI | GGATC | 5 cut(s) | 107, 160, 288, 843, 951 |
| AcoI | YGGCCR | 4 cut(s) | 173, 177, 498, 725 |
| AcsI | RAATTY | 1 cut(s) | 182 |
| AcyI | GRCGYC | 3 cut(s) | 35, 77, 878 |
| AfaI | GTAC | 2 cut(s) | 209, 806 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 622, 998 |
| AgsI | TTSAA | 3 cut(s) | 214, 310, 900 |
| AjnI | CCWGG | 2 cut(s) | 542, 615 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 290, 322 |
| Alw21I | GWGCWC | 2 cut(s) | 105, 1007 |
| Alw26I | GTCTC | 4 cut(s) | 373, 495, 744, 918 |
| AlwI | GGATC | 5 cut(s) | 107, 160, 288, 843, 951 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 549, 622 |
| Ama87I | CYCGRG | 2 cut(s) | 679, 759 |
| Aor13HI | TCCGGA | 2 cut(s) | 115, 277 |
| AoxI | GGCC | 5 cut(s) | 120, 173, 177, 498, 725 |
| ApeKI | GCWGC | 8 cut(s) | 5, 413, 532, 549, 607, 707, 710, 862 |
| ApoI | RAATTY | 1 cut(s) | 182 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 67, 99 |
| AspLEI | GCGC | 2 cut(s) | 348, 915 |
| AspS9I | GGNCC | 1 cut(s) | 16 |
| AsuHPI | GGTGA | 5 cut(s) | 484, 760, 779, 919, 991 |
| AvaI | CYCGRG | 2 cut(s) | 679, 759 |
| AvaII | GGWCC | 1 cut(s) | 16 |
| BanII | GRGCYC | 2 cut(s) | 105, 1007 |
| BauI | CACGAG | 1 cut(s) | 104 |
| Bbv12I | GWGCWC | 2 cut(s) | 105, 1007 |
| BbvCI | CCTCAGC | 1 cut(s) | 1040 |
| BbvI | GCAGC | 7 cut(s) | 400, 519, 536, 619, 719, 722, 849 |
| BccI | CCATC | 3 cut(s) | 490, 820, 992 |
| BceAI | ACGGC | 6 cut(s) | 40, 64, 426, 485, 764, 976 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 484, 518 |
| BciT130I | CCWGG | 2 cut(s) | 544, 617 |
| BcoDI | GTCTC | 4 cut(s) | 373, 495, 744, 918 |
| BfaI | CTAG | 2 cut(s) | 572, 656 |
| BfoI | RGCGCY | 1 cut(s) | 349 |
| BfuAI | ACCTGC | 1 cut(s) | 460 |
| BglII | AGATCT | 1 cut(s) | 354 |
| BlpI | GCTNAGC | 2 cut(s) | 611, 627 |
| BmcAI | AGTACT | 2 cut(s) | 209, 806 |
| Bme1390I | CCNGG | 2 cut(s) | 544, 617 |
| Bme18I | GGWCC | 1 cut(s) | 16 |
| BmeT110I | CYCGRG | 2 cut(s) | 679, 759 |
| BmgT120I | GGNCC | 1 cut(s) | 16 |
| BmiI | GGNNCC | 1 cut(s) | 990 |
| BmrFI | CCNGG | 2 cut(s) | 544, 617 |
| BoxI | GACNNNNGTC | 1 cut(s) | 55 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 183, 215 |
| BpmI | CTGGAG | 2 cut(s) | 214, 411 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1040 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 611, 627 |
| BsaAI | YACGTR | 1 cut(s) | 1029 |
| BsaHI | GRCGYC | 3 cut(s) | 35, 77, 878 |
| BsaI | GGTCTC | 1 cut(s) | 373 |
| BsaJI | CCNNGG | 4 cut(s) | 381, 678, 714, 961 |
| BsaWI | WCCGGW | 2 cut(s) | 115, 277 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 212, 242, 409, 439, 1013, 1043 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 622, 998 |
| Bse118I | RCCGGY | 1 cut(s) | 175 |
| Bse3DI | GCAATG | 1 cut(s) | 666 |
| BseAI | TCCGGA | 2 cut(s) | 115, 277 |
| BseBI | CCWGG | 2 cut(s) | 544, 617 |
| BseDI | CCNNGG | 4 cut(s) | 381, 678, 714, 961 |
| BseGI | GGATG | 2 cut(s) | 730, 1003 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 622, 998 |
| BseMI | GCAATG | 1 cut(s) | 666 |
| BseMII | CTCAG | 3 cut(s) | 625, 641, 1031 |
| BseX3I | CGGCCG | 2 cut(s) | 173, 177 |
| BseXI | GCAGC | 7 cut(s) | 400, 519, 536, 619, 719, 722, 849 |
| Bsh1236I | CGCG | 4 cut(s) | 336, 383, 538, 915 |
| Bsh1285I | CGRYCG | 3 cut(s) | 176, 180, 405 |
| BshFI | GGCC | 5 cut(s) | 122, 175, 179, 500, 727 |
| BsiEI | CGRYCG | 3 cut(s) | 176, 180, 405 |
| BsiHKAI | GWGCWC | 2 cut(s) | 105, 1007 |
| BsiHKCI | CYCGRG | 2 cut(s) | 679, 759 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 622, 998 |
| BsmAI | GTCTC | 4 cut(s) | 373, 495, 744, 918 |
| BsmBI | CGTCTC | 2 cut(s) | 495, 918 |
| BsnI | GGCC | 5 cut(s) | 122, 175, 179, 500, 727 |
| Bso31I | GGTCTC | 1 cut(s) | 373 |
| BsoBI | CYCGRG | 2 cut(s) | 679, 759 |
| Bsp1286I | GDGCHC | 2 cut(s) | 105, 1007 |
| Bsp13I | TCCGGA | 2 cut(s) | 115, 277 |
| Bsp143I | GATC | 7 cut(s) | 112, 152, 280, 354, 474, 835, 943 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 611, 627 |
| BspANI | GGCC | 5 cut(s) | 122, 175, 179, 500, 727 |
| BspCNI | CTCAG | 3 cut(s) | 624, 640, 1032 |
| BspEI | TCCGGA | 2 cut(s) | 115, 277 |
| BspFNI | CGCG | 4 cut(s) | 336, 383, 538, 915 |
| BspHI | TCATGA | 1 cut(s) | 946 |
| BspLI | GGNNCC | 1 cut(s) | 990 |
| BspMI | ACCTGC | 1 cut(s) | 460 |
| BspPI | GGATC | 5 cut(s) | 107, 160, 288, 843, 951 |
| BspTNI | GGTCTC | 1 cut(s) | 373 |
| BsrBI | CCGCTC | 1 cut(s) | 586 |
| BsrDI | GCAATG | 1 cut(s) | 666 |
| BsrFI | RCCGGY | 1 cut(s) | 175 |
| BssAI | RCCGGY | 1 cut(s) | 175 |
| BssECI | CCNNGG | 4 cut(s) | 381, 678, 714, 961 |
| BssMI | GATC | 7 cut(s) | 112, 152, 280, 354, 474, 835, 943 |
| BssNI | GRCGYC | 3 cut(s) | 35, 77, 878 |
| BssSI | CACGAG | 1 cut(s) | 104 |
| BssT1I | CCWWGG | 1 cut(s) | 961 |
| Bst2BI | CACGAG | 1 cut(s) | 104 |
| Bst2UI | CCWGG | 2 cut(s) | 544, 617 |
| Bst4CI | ACNGT | 3 cut(s) | 406, 436, 523 |
| Bst6I | CTCTTC | 1 cut(s) | 813 |
| BstACI | GRCGYC | 3 cut(s) | 35, 77, 878 |
| BstBAI | YACGTR | 1 cut(s) | 1029 |
| BstC8I | GCNNGC | 3 cut(s) | 177, 245, 624 |
| BstDEI | CTNAG | 3 cut(s) | 611, 627, 1040 |
| BstDSI | CCRYGG | 1 cut(s) | 381 |
| BstF5I | GGATG | 2 cut(s) | 730, 1003 |
| BstFNI | CGCG | 4 cut(s) | 336, 383, 538, 915 |
| BstH2I | RGCGCY | 1 cut(s) | 349 |
| BstHHI | GCGC | 2 cut(s) | 348, 915 |
| BstKTI | GATC | 7 cut(s) | 115, 155, 283, 357, 477, 838, 946 |
| BstMAI | GTCTC | 4 cut(s) | 373, 495, 744, 918 |
| BstMBI | GATC | 7 cut(s) | 112, 152, 280, 354, 474, 835, 943 |
| BstMCI | CGRYCG | 3 cut(s) | 176, 180, 405 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 185, 240, 371, 380, 392, 628, 733, 859, 862 |
| BstNI | CCWGG | 2 cut(s) | 544, 617 |
| BstNSI | RCATGY | 1 cut(s) | 607 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 55 |
| BstSCI | CCNGG | 2 cut(s) | 542, 615 |
| BstUI | CGCG | 4 cut(s) | 336, 383, 538, 915 |
| BstV1I | GCAGC | 7 cut(s) | 400, 519, 536, 619, 719, 722, 849 |
| BstX2I | RGATCY | 1 cut(s) | 354 |
| BstYI | RGATCY | 1 cut(s) | 354 |
| BstZI | CGGCCG | 2 cut(s) | 173, 177 |
| BsuRI | GGCC | 5 cut(s) | 122, 175, 179, 500, 727 |
| BtgI | CCRYGG | 1 cut(s) | 381 |
| BtsCI | GGATG | 2 cut(s) | 730, 1003 |
| BtsI | GCAGTG | 1 cut(s) | 419 |
| BtsIMutI | CAGTG | 1 cut(s) | 419 |
| BveI | ACCTGC | 1 cut(s) | 460 |
| Cac8I | GCNNGC | 3 cut(s) | 177, 245, 624 |
| CaiI | CAGNNNCTG | 2 cut(s) | 549, 622 |
| CciI | TCATGA | 1 cut(s) | 946 |
| CfoI | GCGC | 2 cut(s) | 348, 915 |
| Cfr10I | RCCGGY | 1 cut(s) | 175 |
| Cfr13I | GGNCC | 1 cut(s) | 16 |
| Cfr42I | CCGCGG | 1 cut(s) | 384 |
| CseI | GACGC | 4 cut(s) | 24, 85, 886, 941 |
| Csp6I | GTAC | 2 cut(s) | 208, 805 |
| CviAII | CATG | 2 cut(s) | 604, 947 |
| CviQI | GTAC | 2 cut(s) | 208, 805 |
| DdeI | CTNAG | 3 cut(s) | 611, 627, 1040 |
| DpnI | GATC | 7 cut(s) | 114, 154, 282, 356, 476, 837, 945 |
| DpnII | GATC | 7 cut(s) | 112, 152, 280, 354, 474, 835, 943 |
| EaeI | YGGCCR | 4 cut(s) | 173, 177, 498, 725 |
| EagI | CGGCCG | 2 cut(s) | 173, 177 |
| Eam1104I | CTCTTC | 1 cut(s) | 813 |
| EarI | CTCTTC | 1 cut(s) | 813 |
| EciI | GGCGGA | 6 cut(s) | 63, 165, 230, 367, 717, 815 |
| Ecl136II | GAGCTC | 2 cut(s) | 103, 1005 |
| EclXI | CGGCCG | 2 cut(s) | 173, 177 |
| Eco130I | CCWWGG | 1 cut(s) | 961 |
| Eco24I | GRGCYC | 2 cut(s) | 105, 1007 |
| Eco31I | GGTCTC | 1 cut(s) | 373 |
| Eco47I | GGWCC | 1 cut(s) | 16 |
| Eco52I | CGGCCG | 2 cut(s) | 173, 177 |
| Eco53kI | GAGCTC | 2 cut(s) | 103, 1005 |
| Eco88I | CYCGRG | 2 cut(s) | 679, 759 |
| EcoICRI | GAGCTC | 2 cut(s) | 103, 1005 |
| EcoRII | CCWGG | 2 cut(s) | 542, 615 |
| EcoT14I | CCWWGG | 1 cut(s) | 961 |
| EcoT38I | GRGCYC | 2 cut(s) | 105, 1007 |
| ErhI | CCWWGG | 1 cut(s) | 961 |
| Esp3I | CGTCTC | 2 cut(s) | 495, 918 |
| FaeI | CATG | 2 cut(s) | 607, 950 |
| FaiI | YATR | 7 cut(s) | 99, 164, 197, 258, 605, 653, 948 |
| FatI | CATG | 2 cut(s) | 603, 946 |
| FauI | CCCGC | 1 cut(s) | 805 |
| FokI | GGATG | 2 cut(s) | 717, 1010 |
| FriOI | GRGCYC | 2 cut(s) | 105, 1007 |
| FseI | GGCCGGCC | 1 cut(s) | 179 |
| FspBI | CTAG | 2 cut(s) | 572, 656 |
| GlaI | GCGC | 2 cut(s) | 347, 914 |
| GsuI | CTGGAG | 2 cut(s) | 214, 411 |
| HaeII | RGCGCY | 1 cut(s) | 349 |
| HaeIII | GGCC | 5 cut(s) | 122, 175, 179, 500, 727 |
| HgaI | GACGC | 4 cut(s) | 24, 85, 886, 941 |
| HhaI | GCGC | 2 cut(s) | 348, 915 |
| Hin1I | GRCGYC | 3 cut(s) | 35, 77, 878 |
| Hin1II | CATG | 2 cut(s) | 607, 950 |
| Hin6I | GCGC | 2 cut(s) | 346, 913 |
| HinP1I | GCGC | 2 cut(s) | 346, 913 |
| HinfI | GANTC | 8 cut(s) | 29, 56, 70, 327, 340, 514, 568, 871 |
| HphI | GGTGA | 5 cut(s) | 484, 760, 779, 919, 991 |
| Hpy166II | GTNNAC | 1 cut(s) | 109 |
| Hpy188I | TCNGA | 7 cut(s) | 75, 267, 495, 519, 870, 876, 997 |
| Hpy188III | TCNNGA | 8 cut(s) | 116, 278, 310, 572, 759, 761, 839, 947 |
| Hpy8I | GTNNAC | 1 cut(s) | 109 |
| Hpy99I | CGWCG | 7 cut(s) | 79, 128, 436, 467, 523, 565, 997 |
| HpyAV | CCTTC | 2 cut(s) | 140, 262 |
| HpyCH4III | ACNGT | 3 cut(s) | 406, 436, 523 |
| HpyCH4IV | ACGT | 2 cut(s) | 95, 1028 |
| HpyCH4V | TGCA | 2 cut(s) | 552, 607 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 185, 240, 371, 380, 392, 628, 733, 859, 862 |
| HpyF3I | CTNAG | 3 cut(s) | 611, 627, 1040 |
| HpySE526I | ACGT | 2 cut(s) | 95, 1028 |
| Hsp92I | GRCGYC | 3 cut(s) | 35, 77, 878 |
| Hsp92II | CATG | 2 cut(s) | 607, 950 |
| HspAI | GCGC | 2 cut(s) | 346, 913 |
| Kpn2I | TCCGGA | 2 cut(s) | 115, 277 |
| KroI | GCCGGC | 1 cut(s) | 175 |
| KroNI | GCCGGC | 1 cut(s) | 177 |
| KspI | CCGCGG | 1 cut(s) | 384 |
| Kzo9I | GATC | 7 cut(s) | 112, 152, 280, 354, 474, 835, 943 |
| LmnI | GCTCC | 7 cut(s) | 141, 546, 619, 704, 988, 1002, 1010 |
| Lsp1109I | GCAGC | 7 cut(s) | 400, 519, 536, 619, 719, 722, 849 |
| MaeI | CTAG | 2 cut(s) | 572, 656 |
| MaeII | ACGT | 2 cut(s) | 95, 1028 |
| MaeIII | GTNAC | 2 cut(s) | 406, 644 |
| MalI | GATC | 7 cut(s) | 114, 154, 282, 356, 476, 837, 945 |
| MbiI | CCGCTC | 1 cut(s) | 586 |
| MboI | GATC | 7 cut(s) | 112, 152, 280, 354, 474, 835, 943 |
| MboII | GAAGA | 2 cut(s) | 364, 830 |
| MflI | RGATCY | 1 cut(s) | 354 |
| MhlI | GDGCHC | 2 cut(s) | 105, 1007 |
| MluCI | AATT | 1 cut(s) | 182 |
| MlyI | GAGTC | 3 cut(s) | 65, 321, 508 |
| MmeI | TCCRAC | 4 cut(s) | 98, 507, 542, 975 |
| MroI | TCCGGA | 2 cut(s) | 115, 277 |
| MroNI | GCCGGC | 1 cut(s) | 175 |
| MspA1I | CMGCKG | 3 cut(s) | 383, 736, 862 |
| MspR9I | CCNGG | 2 cut(s) | 544, 617 |
| MvaI | CCWGG | 2 cut(s) | 544, 617 |
| MvnI | CGCG | 4 cut(s) | 336, 383, 538, 915 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 185, 240, 371, 380, 392, 628, 733, 859, 862 |
| NaeI | GCCGGC | 1 cut(s) | 177 |
| NdeII | GATC | 7 cut(s) | 112, 152, 280, 354, 474, 835, 943 |
| NgoMIV | GCCGGC | 1 cut(s) | 175 |
| NlaIII | CATG | 2 cut(s) | 607, 950 |
| NlaIV | GGNNCC | 1 cut(s) | 990 |
| NmeAIII | GCCGAG | 2 cut(s) | 739, 788 |
| NmuCI | GTSAC | 1 cut(s) | 406 |
| NspI | RCATGY | 1 cut(s) | 607 |
| PaeR7I | CTCGAG | 1 cut(s) | 759 |
| PagI | TCATGA | 1 cut(s) | 946 |
| PaqCI | CACCTGC | 1 cut(s) | 460 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 65, 485 |
| PdiI | GCCGGC | 1 cut(s) | 177 |
| PfeI | GAWTC | 5 cut(s) | 29, 70, 340, 568, 871 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 622 |
| PleI | GAGTC | 3 cut(s) | 64, 321, 508 |
| PpsI | GAGTC | 3 cut(s) | 64, 321, 508 |
| Ppu21I | YACGTR | 1 cut(s) | 1029 |
| PshAI | GACNNNNGTC | 1 cut(s) | 55 |
| Psp124BI | GAGCTC | 2 cut(s) | 105, 1007 |
| Psp6I | CCWGG | 2 cut(s) | 542, 615 |
| PspGI | CCWGG | 2 cut(s) | 542, 615 |
| PspN4I | GGNNCC | 1 cut(s) | 990 |
| PspPI | GGNCC | 1 cut(s) | 16 |
| PstNI | CAGNNNCTG | 2 cut(s) | 549, 622 |
| PsuI | RGATCY | 1 cut(s) | 354 |
| RigI | GGCCGGCC | 1 cut(s) | 179 |
| RsaI | GTAC | 2 cut(s) | 209, 806 |
| RsaNI | GTAC | 2 cut(s) | 208, 805 |
| SacI | GAGCTC | 2 cut(s) | 105, 1007 |
| SacII | CCGCGG | 1 cut(s) | 384 |
| Sau3AI | GATC | 7 cut(s) | 112, 152, 280, 354, 474, 835, 943 |
| Sau96I | GGNCC | 1 cut(s) | 16 |
| ScaI | AGTACT | 2 cut(s) | 209, 806 |
| SchI | GAGTC | 3 cut(s) | 65, 321, 508 |
| ScrFI | CCNGG | 2 cut(s) | 544, 617 |
| SduI | GDGCHC | 2 cut(s) | 105, 1007 |
| Sfr274I | CTCGAG | 1 cut(s) | 759 |
| Sfr303I | CCGCGG | 1 cut(s) | 384 |
| SgrBI | CCGCGG | 1 cut(s) | 384 |
| SinI | GGWCC | 1 cut(s) | 16 |
| SlaI | CTCGAG | 1 cut(s) | 759 |
| SmlI | CTYRAG | 1 cut(s) | 759 |
| SmoI | CTYRAG | 1 cut(s) | 759 |
| Sse9I | AATT | 1 cut(s) | 182 |
| SspMI | CTAG | 2 cut(s) | 572, 656 |
| SstI | GAGCTC | 2 cut(s) | 105, 1007 |
| StyD4I | CCNGG | 2 cut(s) | 542, 615 |
| StyI | CCWWGG | 1 cut(s) | 961 |
| TaaI | ACNGT | 3 cut(s) | 406, 436, 523 |
| TaiI | ACGT | 2 cut(s) | 98, 1031 |
| TaqI | TCGA | 2 cut(s) | 155, 760 |
| TasI | AATT | 1 cut(s) | 182 |
| TatI | WGTACW | 2 cut(s) | 207, 804 |
| TfiI | GAWTC | 5 cut(s) | 29, 70, 340, 568, 871 |
| TscAI | CASTG | 1 cut(s) | 426 |
| TseFI | GTSAC | 1 cut(s) | 406 |
| TseI | GCWGC | 8 cut(s) | 5, 413, 532, 549, 607, 707, 710, 862 |
| Tsp45I | GTSAC | 1 cut(s) | 406 |
| TspDTI | ATGAA | 1 cut(s) | 151 |
| TspGWI | ACGGA | 1 cut(s) | 578 |
| TspRI | CASTG | 1 cut(s) | 426 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 622 |
| VpaK11BI | GGWCC | 1 cut(s) | 16 |
| XapI | RAATTY | 1 cut(s) | 182 |
| XbaI | TCTAGA | 1 cut(s) | 571 |
| XceI | RCATGY | 1 cut(s) | 607 |
| XhoI | CTCGAG | 1 cut(s) | 759 |
| XspI | CTAG | 2 cut(s) | 572, 656 |
| ZrmI | AGTACT | 2 cut(s) | 209, 806 |