TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 186 | 2.6e-50 | TIR domain |
| TIR_2 | PF13676 | 21 - 117 | 9.1e-15 | TIR domain |
| NB-ARC | PF00931 | 212 - 367 | 6.3e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 435 - 504 | 5.8e-22 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 645 - 748 | 2.6e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 792 - 859 | 7.8e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| C-JID | PF20160 | 904 - 1043 | 2.2e-19 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 1533, 1821 |
| AccB1I | GGYRCC | 2 cut(s) | 2566, 2755 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1489, 3079 |
| AccI | GTMKAC | 1 cut(s) | 1987 |
| AccII | CGCG | 2 cut(s) | 2339, 2816 |
| AccIII | TCCGGA | 1 cut(s) | 190 |
| AciI | CCGC | 5 cut(s) | 1537, 2753, 2816, 2848, 3103 |
| AclWI | GGATC | 2 cut(s) | 338, 1195 |
| AcoI | YGGCCR | 1 cut(s) | 3070 |
| AcsI | RAATTY | 7 cut(s) | 220, 466, 481, 1140, 2590, 2724, 3050 |
| AcuI | CTGAAG | 1 cut(s) | 2648 |
| AcyI | GRCGYC | 1 cut(s) | 2756 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 175, 1489, 3079 |
| AgeI | ACCGGT | 1 cut(s) | 2860 |
| AhlI | ACTAGT | 1 cut(s) | 1765 |
| AjiI | CACGTC | 1 cut(s) | 1573 |
| AjnI | CCWGG | 6 cut(s) | 1045, 1217, 1528, 1575, 2713, 2782 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 940, 972 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2710, 2742 |
| Alw21I | GWGCWC | 1 cut(s) | 513 |
| Alw26I | GTCTC | 1 cut(s) | 3020 |
| AlwI | GGATC | 2 cut(s) | 338, 1195 |
| Aor13HI | TCCGGA | 1 cut(s) | 190 |
| AoxI | GGCC | 4 cut(s) | 1492, 2161, 2817, 3070 |
| ApeKI | GCWGC | 6 cut(s) | 446, 530, 1539, 1840, 2293, 2473 |
| ApoI | RAATTY | 7 cut(s) | 220, 466, 481, 1140, 2590, 2724, 3050 |
| AsiGI | ACCGGT | 1 cut(s) | 2860 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 609, 1068, 1319, 1503 |
| AspLEI | GCGC | 4 cut(s) | 300, 1217, 1623, 2758 |
| AspS9I | GGNCC | 5 cut(s) | 1042, 1492, 2161, 2273, 3100 |
| AsuC2I | CCSGG | 2 cut(s) | 91, 370 |
| AsuHPI | GGTGA | 3 cut(s) | 92, 2626, 2966 |
| AsuII | TTCGAA | 1 cut(s) | 923 |
| AvaII | GGWCC | 3 cut(s) | 1042, 2273, 3100 |
| AxyI | CCTNAGG | 1 cut(s) | 2066 |
| BalI | TGGCCA | 1 cut(s) | 3072 |
| BanI | GGYRCC | 2 cut(s) | 2566, 2755 |
| BanII | GRGCYC | 1 cut(s) | 513 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1343, 1375, 1971, 2003 |
| BauI | CACGAG | 2 cut(s) | 1628, 2523 |
| BbsI | GAAGAC | 6 cut(s) | 90, 367, 1154, 1566, 2160, 2225 |
| Bbv12I | GWGCWC | 1 cut(s) | 513 |
| BbvCI | CCTCAGC | 1 cut(s) | 1907 |
| BbvI | GCAGC | 6 cut(s) | 433, 517, 1551, 1852, 2280, 2460 |
| BccI | CCATC | 8 cut(s) | 565, 1286, 1448, 1700, 2372, 2527, 2557, 2897 |
| BceAI | ACGGC | 1 cut(s) | 2486 |
| BciT130I | CCWGG | 6 cut(s) | 1047, 1219, 1530, 1577, 2715, 2784 |
| BclI | TGATCA | 1 cut(s) | 2971 |
| BcnI | CCSGG | 2 cut(s) | 91, 370 |
| BcoDI | GTCTC | 1 cut(s) | 3020 |
| BcuI | ACTAGT | 1 cut(s) | 1765 |
| BfaI | CTAG | 9 cut(s) | 309, 581, 810, 993, 1325, 1379, 1766, 1826, 2541 |
| BfmI | CTRYAG | 4 cut(s) | 493, 531, 1814, 2928 |
| BfoI | RGCGCY | 2 cut(s) | 1218, 2759 |
| BfuAI | ACCTGC | 2 cut(s) | 1533, 1821 |
| BglII | AGATCT | 1 cut(s) | 2670 |
| BisI | GCNGC | 9 cut(s) | 447, 531, 1540, 1841, 2294, 2474, 2754, 2817, 2848 |
| BlsI | GCNGC | 9 cut(s) | 448, 532, 1541, 1842, 2295, 2475, 2755, 2818, 2849 |
| BmcAI | AGTACT | 2 cut(s) | 702, 2876 |
| Bme1390I | CCNGG | 8 cut(s) | 91, 370, 1047, 1219, 1530, 1577, 2715, 2784 |
| Bme18I | GGWCC | 3 cut(s) | 1042, 2273, 3100 |
| BmgBI | CACGTC | 1 cut(s) | 1573 |
| BmgT120I | GGNCC | 5 cut(s) | 1042, 1492, 2161, 2273, 3100 |
| BmiI | GGNNCC | 6 cut(s) | 1044, 1594, 2362, 2568, 2757, 3101 |
| BmrFI | CCNGG | 8 cut(s) | 91, 370, 1047, 1219, 1530, 1577, 2715, 2784 |
| BmsI | GCATC | 7 cut(s) | 263, 631, 804, 1808, 1908, 2117, 2788 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2965 |
| BpiI | GAAGAC | 6 cut(s) | 90, 367, 1154, 1566, 2160, 2225 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1991, 2023, 2903, 2935 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1907 |
| Bpu14I | TTCGAA | 1 cut(s) | 923 |
| BpuEI | CTTGAG | 3 cut(s) | 1913, 2159, 2227 |
| BpuMI | CCSGG | 2 cut(s) | 91, 370 |
| BsaBI | GATNNNNATC | 2 cut(s) | 342, 915 |
| BsaHI | GRCGYC | 1 cut(s) | 2756 |
| BsaJI | CCNNGG | 1 cut(s) | 1045 |
| BsaWI | WCCGGW | 3 cut(s) | 190, 2149, 2860 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 175, 1489, 3079 |
| Bse118I | RCCGGY | 1 cut(s) | 2860 |
| Bse1I | ACTGG | 4 cut(s) | 1701, 2589, 2616, 2851 |
| Bse21I | CCTNAGG | 1 cut(s) | 2066 |
| Bse3DI | GCAATG | 3 cut(s) | 769, 1329, 2896 |
| Bse8I | GATNNNNATC | 2 cut(s) | 342, 915 |
| BseAI | TCCGGA | 1 cut(s) | 190 |
| BseBI | CCWGG | 6 cut(s) | 1047, 1219, 1530, 1577, 2715, 2784 |
| BseDI | CCNNGG | 1 cut(s) | 1045 |
| BseGI | GGATG | 8 cut(s) | 160, 280, 819, 2009, 2132, 2270, 2364, 2779 |
| BseJI | GATNNNNATC | 2 cut(s) | 342, 915 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 175, 1489, 3079 |
| BseMI | GCAATG | 3 cut(s) | 769, 1329, 2896 |
| BseMII | CTCAG | 2 cut(s) | 1921, 2430 |
| BseNI | ACTGG | 4 cut(s) | 1701, 2589, 2616, 2851 |
| BseXI | GCAGC | 6 cut(s) | 433, 517, 1551, 1852, 2280, 2460 |
| BseYI | CCCAGC | 2 cut(s) | 817, 2953 |
| BsgI | GTGCAG | 1 cut(s) | 210 |
| Bsh1236I | CGCG | 2 cut(s) | 2339, 2816 |
| BshFI | GGCC | 4 cut(s) | 1494, 2163, 2819, 3072 |
| BshNI | GGYRCC | 2 cut(s) | 2566, 2755 |
| BshTI | ACCGGT | 1 cut(s) | 2860 |
| BsiHKAI | GWGCWC | 1 cut(s) | 513 |
| BsiSI | CCGG | 5 cut(s) | 91, 191, 369, 2150, 2861 |
| BslFI | GGGAC | 3 cut(s) | 191, 1028, 2970 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 175, 1489, 3079 |
| BsmAI | GTCTC | 1 cut(s) | 3020 |
| BsmFI | GGGAC | 3 cut(s) | 191, 1028, 2970 |
| BsnI | GGCC | 4 cut(s) | 1494, 2163, 2819, 3072 |
| Bsp119I | TTCGAA | 1 cut(s) | 923 |
| Bsp1286I | GDGCHC | 1 cut(s) | 513 |
| Bsp13I | TCCGGA | 1 cut(s) | 190 |
| Bsp1407I | TGTACA | 3 cut(s) | 114, 1717, 2267 |
| Bsp143I | GATC | 9 cut(s) | 119, 343, 709, 1187, 2116, 2374, 2670, 2740, 2971 |
| BspACI | CCGC | 5 cut(s) | 1537, 2753, 2816, 2848, 3103 |
| BspANI | GGCC | 4 cut(s) | 1494, 2163, 2819, 3072 |
| BspCNI | CTCAG | 2 cut(s) | 1920, 2431 |
| BspEI | TCCGGA | 1 cut(s) | 190 |
| BspFNI | CGCG | 2 cut(s) | 2339, 2816 |
| BspHI | TCATGA | 1 cut(s) | 847 |
| BspLI | GGNNCC | 6 cut(s) | 1044, 1594, 2362, 2568, 2757, 3101 |
| BspMAI | CTGCAG | 2 cut(s) | 535, 1818 |
| BspMI | ACCTGC | 2 cut(s) | 1533, 1821 |
| BspPI | GGATC | 2 cut(s) | 338, 1195 |
| BspQI | GCTCTTC | 1 cut(s) | 1074 |
| BspT104I | TTCGAA | 1 cut(s) | 923 |
| BspT107I | GGYRCC | 2 cut(s) | 2566, 2755 |
| BsrDI | GCAATG | 3 cut(s) | 769, 1329, 2896 |
| BsrFI | RCCGGY | 1 cut(s) | 2860 |
| BsrGI | TGTACA | 3 cut(s) | 114, 1717, 2267 |
| BsrI | ACTGG | 4 cut(s) | 1701, 2589, 2616, 2851 |
| BssAI | RCCGGY | 1 cut(s) | 2860 |
| BssECI | CCNNGG | 1 cut(s) | 1045 |
| BssMI | GATC | 9 cut(s) | 119, 343, 709, 1187, 2116, 2374, 2670, 2740, 2971 |
| BssNAI | GTATAC | 1 cut(s) | 1988 |
| BssNI | GRCGYC | 1 cut(s) | 2756 |
| BssSI | CACGAG | 2 cut(s) | 1628, 2523 |
| Bst1107I | GTATAC | 1 cut(s) | 1988 |
| Bst2BI | CACGAG | 2 cut(s) | 1628, 2523 |
| Bst2UI | CCWGG | 6 cut(s) | 1047, 1219, 1530, 1577, 2715, 2784 |
| Bst4CI | ACNGT | 6 cut(s) | 161, 1761, 1889, 2256, 2462, 2633 |
| Bst6I | CTCTTC | 6 cut(s) | 25, 1074, 1198, 1325, 1346, 3010 |
| BstACI | GRCGYC | 1 cut(s) | 2756 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1477, 2886 |
| BstAUI | TGTACA | 3 cut(s) | 114, 1717, 2267 |
| BstBI | TTCGAA | 1 cut(s) | 923 |
| BstC8I | GCNNGC | 2 cut(s) | 1625, 1659 |
| BstDEI | CTNAG | 6 cut(s) | 68, 1907, 2066, 2439, 2447, 3106 |
| BstF5I | GGATG | 8 cut(s) | 160, 280, 819, 2009, 2132, 2270, 2364, 2779 |
| BstFNI | CGCG | 2 cut(s) | 2339, 2816 |
| BstH2I | RGCGCY | 2 cut(s) | 1218, 2759 |
| BstHHI | GCGC | 4 cut(s) | 300, 1217, 1623, 2758 |
| BstKTI | GATC | 9 cut(s) | 122, 346, 712, 1190, 2119, 2377, 2673, 2743, 2974 |
| BstMAI | GTCTC | 1 cut(s) | 3020 |
| BstMBI | GATC | 9 cut(s) | 119, 343, 709, 1187, 2116, 2374, 2670, 2740, 2971 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1477, 1539, 2822, 2831, 2886 |
| BstNI | CCWGG | 6 cut(s) | 1047, 1219, 1530, 1577, 2715, 2784 |
| BstNSI | RCATGY | 2 cut(s) | 1338, 1661 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2965 |
| BstSCI | CCNGG | 8 cut(s) | 89, 368, 1045, 1217, 1528, 1575, 2713, 2782 |
| BstSFI | CTRYAG | 4 cut(s) | 493, 531, 1814, 2928 |
| BstUI | CGCG | 2 cut(s) | 2339, 2816 |
| BstV1I | GCAGC | 6 cut(s) | 433, 517, 1551, 1852, 2280, 2460 |
| BstV2I | GAAGAC | 6 cut(s) | 90, 367, 1154, 1566, 2160, 2225 |
| BstX2I | RGATCY | 2 cut(s) | 1187, 2670 |
| BstYI | RGATCY | 2 cut(s) | 1187, 2670 |
| BstZ17I | GTATAC | 1 cut(s) | 1988 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2066 |
| BsuRI | GGCC | 4 cut(s) | 1494, 2163, 2819, 3072 |
| BtrI | CACGTC | 1 cut(s) | 1573 |
| BtsCI | GGATG | 8 cut(s) | 160, 280, 819, 2009, 2132, 2270, 2364, 2779 |
| BtsI | GCAGTG | 2 cut(s) | 1608, 2089 |
| BtsIMutI | CAGTG | 5 cut(s) | 1608, 1680, 2089, 2582, 2638 |
| BveI | ACCTGC | 2 cut(s) | 1533, 1821 |
| Cac8I | GCNNGC | 2 cut(s) | 1625, 1659 |
| CciI | TCATGA | 1 cut(s) | 847 |
| CfoI | GCGC | 4 cut(s) | 300, 1217, 1623, 2758 |
| Cfr10I | RCCGGY | 1 cut(s) | 2860 |
| Cfr13I | GGNCC | 5 cut(s) | 1042, 1492, 2161, 2273, 3100 |
| CseI | GACGC | 1 cut(s) | 1391 |
| CspAI | ACCGGT | 1 cut(s) | 2860 |
| DdeI | CTNAG | 6 cut(s) | 68, 1907, 2066, 2439, 2447, 3106 |
| DinI | GGCGCC | 1 cut(s) | 2757 |
| DpnI | GATC | 9 cut(s) | 121, 345, 711, 1189, 2118, 2376, 2672, 2742, 2973 |
| DpnII | GATC | 9 cut(s) | 119, 343, 709, 1187, 2116, 2374, 2670, 2740, 2971 |
| DraI | TTTAAA | 1 cut(s) | 1096 |
| EaeI | YGGCCR | 1 cut(s) | 3070 |
| Eam1104I | CTCTTC | 6 cut(s) | 25, 1074, 1198, 1325, 1346, 3010 |
| EarI | CTCTTC | 6 cut(s) | 25, 1074, 1198, 1325, 1346, 3010 |
| Ecl136II | GAGCTC | 1 cut(s) | 511 |
| Eco24I | GRGCYC | 1 cut(s) | 513 |
| Eco32I | GATATC | 1 cut(s) | 2283 |
| Eco47I | GGWCC | 3 cut(s) | 1042, 2273, 3100 |
| Eco53kI | GAGCTC | 1 cut(s) | 511 |
| Eco57I | CTGAAG | 1 cut(s) | 2648 |
| Eco81I | CCTNAGG | 1 cut(s) | 2066 |
| EcoICRI | GAGCTC | 1 cut(s) | 511 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1042 |
| EcoRI | GAATTC | 1 cut(s) | 481 |
| EcoRII | CCWGG | 6 cut(s) | 1045, 1217, 1528, 1575, 2713, 2782 |
| EcoRV | GATATC | 1 cut(s) | 2283 |
| EcoT22I | ATGCAT | 2 cut(s) | 256, 1473 |
| EcoT38I | GRGCYC | 1 cut(s) | 513 |
| EgeI | GGCGCC | 1 cut(s) | 2757 |
| EheI | GGCGCC | 1 cut(s) | 2757 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 36, 1304, 1336 |
| FaqI | GGGAC | 3 cut(s) | 191, 1028, 2970 |
| FauNDI | CATATG | 1 cut(s) | 836 |
| FbaI | TGATCA | 1 cut(s) | 2971 |
| FblI | GTMKAC | 1 cut(s) | 1987 |
| Fnu4HI | GCNGC | 9 cut(s) | 447, 531, 1540, 1841, 2294, 2474, 2754, 2817, 2848 |
| FokI | GGATG | 8 cut(s) | 167, 287, 826, 1996, 2139, 2277, 2351, 2766 |
| FriOI | GRGCYC | 1 cut(s) | 513 |
| Fsp4HI | GCNGC | 9 cut(s) | 447, 531, 1540, 1841, 2294, 2474, 2754, 2817, 2848 |
| FspBI | CTAG | 9 cut(s) | 309, 581, 810, 993, 1325, 1379, 1766, 1826, 2541 |
| GlaI | GCGC | 4 cut(s) | 299, 1216, 1622, 2757 |
| GluI | GCNGC | 9 cut(s) | 447, 531, 1540, 1841, 2294, 2474, 2754, 2817, 2848 |
| GsaI | CCCAGC | 2 cut(s) | 821, 2957 |
| HaeII | RGCGCY | 2 cut(s) | 1218, 2759 |
| HaeIII | GGCC | 4 cut(s) | 1494, 2163, 2819, 3072 |
| HapII | CCGG | 5 cut(s) | 91, 191, 369, 2150, 2861 |
| HgaI | GACGC | 1 cut(s) | 1391 |
| HhaI | GCGC | 4 cut(s) | 300, 1217, 1623, 2758 |
| Hin1I | GRCGYC | 1 cut(s) | 2756 |
| Hin6I | GCGC | 4 cut(s) | 298, 1215, 1621, 2756 |
| HinP1I | GCGC | 4 cut(s) | 298, 1215, 1621, 2756 |
| HincII | GTYRAC | 3 cut(s) | 687, 2005, 2453 |
| HindII | GTYRAC | 3 cut(s) | 687, 2005, 2453 |
| HindIII | AAGCTT | 3 cut(s) | 2135, 2513, 3076 |
| HpaII | CCGG | 5 cut(s) | 91, 191, 369, 2150, 2861 |
| HphI | GGTGA | 3 cut(s) | 92, 2626, 2966 |
| Hpy166II | GTNNAC | 8 cut(s) | 164, 687, 1570, 1720, 1874, 1988, 2005, 2453 |
| Hpy8I | GTNNAC | 8 cut(s) | 164, 687, 1570, 1720, 1874, 1988, 2005, 2453 |
| HpyCH4III | ACNGT | 6 cut(s) | 161, 1761, 1889, 2256, 2462, 2633 |
| HpyCH4IV | ACGT | 2 cut(s) | 263, 1572 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1477, 1539, 2822, 2831, 2886 |
| HpyF3I | CTNAG | 6 cut(s) | 68, 1907, 2066, 2439, 2447, 3106 |
| HpySE526I | ACGT | 2 cut(s) | 263, 1572 |
| Hsp92I | GRCGYC | 1 cut(s) | 2756 |
| HspAI | GCGC | 4 cut(s) | 298, 1215, 1621, 2756 |
| KasI | GGCGCC | 1 cut(s) | 2755 |
| Kpn2I | TCCGGA | 1 cut(s) | 190 |
| Ksp22I | TGATCA | 1 cut(s) | 2971 |
| Kzo9I | GATC | 9 cut(s) | 119, 343, 709, 1187, 2116, 2374, 2670, 2740, 2971 |
| LguI | GCTCTTC | 1 cut(s) | 1074 |
| LmnI | GCTCC | 3 cut(s) | 854, 1485, 2360 |
| Lsp1109I | GCAGC | 6 cut(s) | 433, 517, 1551, 1852, 2280, 2460 |
| LweI | GCATC | 7 cut(s) | 263, 631, 804, 1808, 1908, 2117, 2788 |
| MaeI | CTAG | 9 cut(s) | 309, 581, 810, 993, 1325, 1379, 1766, 1826, 2541 |
| MaeII | ACGT | 2 cut(s) | 263, 1572 |
| MaeIII | GTNAC | 8 cut(s) | 789, 881, 1286, 1545, 1755, 1761, 2580, 2627 |
| MalI | GATC | 9 cut(s) | 121, 345, 711, 1189, 2118, 2376, 2672, 2742, 2973 |
| MboI | GATC | 9 cut(s) | 119, 343, 709, 1187, 2116, 2374, 2670, 2740, 2971 |
| MfeI | CAATTG | 2 cut(s) | 207, 929 |
| MflI | RGATCY | 2 cut(s) | 1187, 2670 |
| MhlI | GDGCHC | 1 cut(s) | 513 |
| MlsI | TGGCCA | 1 cut(s) | 3072 |
| MluNI | TGGCCA | 1 cut(s) | 3072 |
| Mly113I | GGCGCC | 1 cut(s) | 2756 |
| MlyI | GAGTC | 4 cut(s) | 173, 2000, 2025, 2182 |
| MmeI | TCCRAC | 1 cut(s) | 1507 |
| Mox20I | TGGCCA | 1 cut(s) | 3072 |
| Mph1103I | ATGCAT | 2 cut(s) | 256, 1473 |
| MroI | TCCGGA | 1 cut(s) | 190 |
| MroXI | GAANNNNTTC | 4 cut(s) | 609, 1068, 1319, 1503 |
| MscI | TGGCCA | 1 cut(s) | 3072 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1632, 1656, 3066 |
| Msp20I | TGGCCA | 1 cut(s) | 3072 |
| MspA1I | CMGCKG | 1 cut(s) | 1993 |
| MspI | CCGG | 5 cut(s) | 91, 191, 369, 2150, 2861 |
| MspR9I | CCNGG | 8 cut(s) | 91, 370, 1047, 1219, 1530, 1577, 2715, 2784 |
| MunI | CAATTG | 2 cut(s) | 207, 929 |
| MvaI | CCWGG | 6 cut(s) | 1047, 1219, 1530, 1577, 2715, 2784 |
| MvnI | CGCG | 2 cut(s) | 2339, 2816 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1477, 1539, 2822, 2831, 2886 |
| NarI | GGCGCC | 1 cut(s) | 2756 |
| NciI | CCSGG | 2 cut(s) | 91, 370 |
| NdeI | CATATG | 1 cut(s) | 836 |
| NdeII | GATC | 9 cut(s) | 119, 343, 709, 1187, 2116, 2374, 2670, 2740, 2971 |
| NlaIV | GGNNCC | 6 cut(s) | 1044, 1594, 2362, 2568, 2757, 3101 |
| NmeAIII | GCCGAG | 2 cut(s) | 1520, 2358 |
| NmuCI | GTSAC | 2 cut(s) | 881, 2580 |
| NsiI | ATGCAT | 2 cut(s) | 256, 1473 |
| NspI | RCATGY | 2 cut(s) | 1338, 1661 |
| NspV | TTCGAA | 1 cut(s) | 923 |
| PaeI | GCATGC | 1 cut(s) | 1661 |
| PagI | TCATGA | 1 cut(s) | 847 |
| PciSI | GCTCTTC | 1 cut(s) | 1074 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 348, 2129 |
| PdmI | GAANNNNTTC | 4 cut(s) | 609, 1068, 1319, 1503 |
| PfeI | GAWTC | 9 cut(s) | 215, 503, 541, 593, 714, 1921, 1972, 2332, 2811 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1489, 3079 |
| PfoI | TCCNGGA | 2 cut(s) | 1575, 2713 |
| PinAI | ACCGGT | 1 cut(s) | 2860 |
| PkrI | GCNGC | 9 cut(s) | 448, 532, 1541, 1842, 2295, 2475, 2755, 2818, 2849 |
| PleI | GAGTC | 4 cut(s) | 173, 2000, 2025, 2181 |
| PluTI | GGCGCC | 1 cut(s) | 2759 |
| PpsI | GAGTC | 4 cut(s) | 173, 2000, 2025, 2181 |
| PpuMI | RGGWCCY | 1 cut(s) | 1042 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2965 |
| Psp124BI | GAGCTC | 1 cut(s) | 513 |
| Psp5II | RGGWCCY | 1 cut(s) | 1042 |
| Psp6I | CCWGG | 6 cut(s) | 1045, 1217, 1528, 1575, 2713, 2782 |
| PspFI | CCCAGC | 2 cut(s) | 817, 2953 |
| PspGI | CCWGG | 6 cut(s) | 1045, 1217, 1528, 1575, 2713, 2782 |
| PspN4I | GGNNCC | 6 cut(s) | 1044, 1594, 2362, 2568, 2757, 3101 |
| PspPI | GGNCC | 5 cut(s) | 1042, 1492, 2161, 2273, 3100 |
| PspPPI | RGGWCCY | 1 cut(s) | 1042 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 594, 626 |
| PstI | CTGCAG | 2 cut(s) | 535, 1818 |
| PsuI | RGATCY | 2 cut(s) | 1187, 2670 |
| PvuII | CAGCTG | 1 cut(s) | 1993 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1632, 1656, 3066 |
| SacI | GAGCTC | 1 cut(s) | 513 |
| SapI | GCTCTTC | 1 cut(s) | 1074 |
| SatI | GCNGC | 9 cut(s) | 447, 531, 1540, 1841, 2294, 2474, 2754, 2817, 2848 |
| Sau3AI | GATC | 9 cut(s) | 119, 343, 709, 1187, 2116, 2374, 2670, 2740, 2971 |
| Sau96I | GGNCC | 5 cut(s) | 1042, 1492, 2161, 2273, 3100 |
| ScaI | AGTACT | 2 cut(s) | 702, 2876 |
| SchI | GAGTC | 4 cut(s) | 173, 2000, 2025, 2182 |
| ScrFI | CCNGG | 8 cut(s) | 91, 370, 1047, 1219, 1530, 1577, 2715, 2784 |
| SduI | GDGCHC | 1 cut(s) | 513 |
| SfaNI | GCATC | 7 cut(s) | 263, 631, 804, 1808, 1908, 2117, 2788 |
| SfcI | CTRYAG | 4 cut(s) | 493, 531, 1814, 2928 |
| SfoI | GGCGCC | 1 cut(s) | 2757 |
| SfuI | TTCGAA | 1 cut(s) | 923 |
| SinI | GGWCC | 3 cut(s) | 1042, 2273, 3100 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1632, 1656, 3066 |
| SmlI | CTYRAG | 3 cut(s) | 1928, 2138, 2206 |
| SmoI | CTYRAG | 3 cut(s) | 1928, 2138, 2206 |
| SpeI | ACTAGT | 1 cut(s) | 1765 |
| SphI | GCATGC | 1 cut(s) | 1661 |
| SsiI | CCGC | 5 cut(s) | 1537, 2753, 2816, 2848, 3103 |
| SspDI | GGCGCC | 1 cut(s) | 2755 |
| SspMI | CTAG | 9 cut(s) | 309, 581, 810, 993, 1325, 1379, 1766, 1826, 2541 |
| SstI | GAGCTC | 1 cut(s) | 513 |
| StyD4I | CCNGG | 8 cut(s) | 89, 368, 1045, 1217, 1528, 1575, 2713, 2782 |
| TaaI | ACNGT | 6 cut(s) | 161, 1761, 1889, 2256, 2462, 2633 |
| TaiI | ACGT | 2 cut(s) | 266, 1575 |
| TaqI | TCGA | 8 cut(s) | 342, 516, 569, 712, 923, 2132, 2739, 2842 |
| TatI | WGTACW | 7 cut(s) | 114, 235, 700, 1717, 2267, 2836, 2874 |
| TauI | GCSGC | 3 cut(s) | 2756, 2819, 2850 |
| TfiI | GAWTC | 9 cut(s) | 215, 503, 541, 593, 714, 1921, 1972, 2332, 2811 |
| TscAI | CASTG | 5 cut(s) | 1608, 1680, 2089, 2589, 2638 |
| TseFI | GTSAC | 2 cut(s) | 881, 2580 |
| TseI | GCWGC | 6 cut(s) | 446, 530, 1539, 1840, 2293, 2473 |
| Tsp45I | GTSAC | 2 cut(s) | 881, 2580 |
| TspGWI | ACGGA | 2 cut(s) | 2002, 2752 |
| TspRI | CASTG | 5 cut(s) | 1608, 1680, 2089, 2589, 2638 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1489, 3079 |
| VpaK11BI | GGWCC | 3 cut(s) | 1042, 2273, 3100 |
| XapI | RAATTY | 7 cut(s) | 220, 466, 481, 1140, 2590, 2724, 3050 |
| XceI | RCATGY | 2 cut(s) | 1338, 1661 |
| XmiI | GTMKAC | 1 cut(s) | 1987 |
| XmnI | GAANNNNTTC | 4 cut(s) | 609, 1068, 1319, 1503 |
| XspI | CTAG | 9 cut(s) | 309, 581, 810, 993, 1325, 1379, 1766, 1826, 2541 |
| ZrmI | AGTACT | 2 cut(s) | 702, 2876 |
| Zsp2I | ATGCAT | 2 cut(s) | 256, 1473 |