TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 199 | 2.8e-54 | TIR domain |
| TIR_2 | PF13676 | 25 - 121 | 2.9e-13 | TIR domain |
| NB-ARC | PF00931 | 219 - 378 | 3.8e-22 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 445 - 523 | 1.8e-10 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 755 - 838 | 1.5e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 865 - 946 | 8.5e-09 | Leucine-rich repeat region |
| C-JID | PF20160 | 1020 - 1063 | 3.2e-06 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1068 |
| AatII | GACGTC | 1 cut(s) | 75 |
| AccB1I | GGYRCC | 1 cut(s) | 2787 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1609, 2192 |
| AccI | GTMKAC | 3 cut(s) | 435, 1585, 1950 |
| AccIII | TCCGGA | 2 cut(s) | 205, 3130 |
| AciI | CCGC | 3 cut(s) | 103, 1672, 2269 |
| AclWI | GGATC | 9 cut(s) | 15, 199, 954, 1140, 1950, 2524, 2715, 3023, 3185 |
| AcoI | YGGCCR | 1 cut(s) | 480 |
| AcsI | RAATTY | 7 cut(s) | 738, 1293, 1745, 2189, 2209, 2384, 3069 |
| AcuI | CTGAAG | 5 cut(s) | 1093, 1752, 2276, 2366, 2783 |
| AcyI | GRCGYC | 1 cut(s) | 72 |
| AdeI | CACNNNGTG | 1 cut(s) | 282 |
| AfeI | AGCGCT | 1 cut(s) | 220 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 608, 1609, 2192, 3012, 3097 |
| AflII | CTTAAG | 3 cut(s) | 1871, 2000, 2141 |
| AjnI | CCWGG | 5 cut(s) | 278, 1282, 1579, 3058, 3260 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 408, 440, 975, 1007 |
| AleI | CACNNNNGTG | 1 cut(s) | 1511 |
| Alw21I | GWGCWC | 4 cut(s) | 213, 531, 1107, 1915 |
| Alw26I | GTCTC | 7 cut(s) | 1328, 1470, 1572, 1731, 1797, 2117, 2989 |
| AlwI | GGATC | 9 cut(s) | 15, 199, 954, 1140, 1950, 2524, 2715, 3023, 3185 |
| Ama87I | CYCGRG | 1 cut(s) | 1023 |
| Aor13HI | TCCGGA | 2 cut(s) | 205, 3130 |
| Aor51HI | AGCGCT | 1 cut(s) | 220 |
| AoxI | GGCC | 5 cut(s) | 480, 1237, 1771, 2278, 3003 |
| ApeKI | GCWGC | 2 cut(s) | 1590, 3197 |
| ApoI | RAATTY | 7 cut(s) | 738, 1293, 1745, 2189, 2209, 2384, 3069 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1554, 2983 |
| AspLEI | GCGC | 1 cut(s) | 221 |
| AspS9I | GGNCC | 2 cut(s) | 53, 1772 |
| AsuC2I | CCSGG | 1 cut(s) | 2669 |
| AsuHPI | GGTGA | 4 cut(s) | 104, 397, 460, 2511 |
| AsuII | TTCGAA | 1 cut(s) | 2759 |
| AvaI | CYCGRG | 1 cut(s) | 1023 |
| AvaII | GGWCC | 1 cut(s) | 53 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 795, 828 |
| BalI | TGGCCA | 1 cut(s) | 482 |
| BanI | GGYRCC | 1 cut(s) | 2787 |
| BanII | GRGCYC | 3 cut(s) | 213, 531, 1107 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2799, 2831 |
| BbsI | GAAGAC | 6 cut(s) | 102, 543, 713, 1427, 1826, 2315 |
| Bbv12I | GWGCWC | 4 cut(s) | 213, 531, 1107, 1915 |
| BbvI | GCAGC | 2 cut(s) | 1602, 3209 |
| BccI | CCATC | 9 cut(s) | 576, 685, 1611, 2410, 2531, 2827, 2890, 2912, 3151 |
| BceAI | ACGGC | 2 cut(s) | 586, 1578 |
| BciT130I | CCWGG | 5 cut(s) | 280, 1284, 1581, 3060, 3262 |
| BciVI | GTATCC | 2 cut(s) | 1830, 2675 |
| BcnI | CCSGG | 1 cut(s) | 2669 |
| BcoDI | GTCTC | 7 cut(s) | 1328, 1470, 1572, 1731, 1797, 2117, 2989 |
| BfmI | CTRYAG | 1 cut(s) | 2844 |
| BfoI | RGCGCY | 1 cut(s) | 222 |
| BfrI | CTTAAG | 3 cut(s) | 1871, 2000, 2141 |
| BfuI | GTATCC | 2 cut(s) | 1830, 2675 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2277 |
| BglII | AGATCT | 4 cut(s) | 2491, 2632, 2812, 2897 |
| BisI | GCNGC | 2 cut(s) | 1591, 3198 |
| BlsI | GCNGC | 2 cut(s) | 1592, 3199 |
| BmcAI | AGTACT | 1 cut(s) | 2502 |
| Bme1390I | CCNGG | 6 cut(s) | 280, 1284, 1581, 2669, 3060, 3262 |
| Bme18I | GGWCC | 1 cut(s) | 53 |
| BmeT110I | CYCGRG | 1 cut(s) | 1023 |
| BmgT120I | GGNCC | 2 cut(s) | 53, 1772 |
| BmiI | GGNNCC | 3 cut(s) | 886, 2789, 3089 |
| BmrFI | CCNGG | 6 cut(s) | 280, 1284, 1581, 2669, 3060, 3262 |
| BmsI | GCATC | 5 cut(s) | 38, 1509, 1866, 2366, 2754 |
| BpiI | GAAGAC | 6 cut(s) | 102, 543, 713, 1427, 1826, 2315 |
| BpmI | CTGGAG | 2 cut(s) | 1121, 2356 |
| Bpu14I | TTCGAA | 1 cut(s) | 2759 |
| BpuEI | CTTGAG | 5 cut(s) | 235, 636, 928, 1640, 2093 |
| BpuMI | CCSGG | 1 cut(s) | 2669 |
| BsaAI | YACGTR | 1 cut(s) | 197 |
| BsaBI | GATNNNNATC | 1 cut(s) | 945 |
| BsaHI | GRCGYC | 1 cut(s) | 72 |
| BsaJI | CCNNGG | 2 cut(s) | 56, 363 |
| BsaWI | WCCGGW | 2 cut(s) | 205, 3130 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1975, 2005 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 608, 1609, 2192, 3012, 3097 |
| Bse1I | ACTGG | 5 cut(s) | 1431, 1703, 2826, 2955, 3006 |
| Bse3DI | GCAATG | 4 cut(s) | 461, 2052, 2064, 2161 |
| Bse8I | GATNNNNATC | 1 cut(s) | 945 |
| BseAI | TCCGGA | 2 cut(s) | 205, 3130 |
| BseBI | CCWGG | 5 cut(s) | 280, 1284, 1581, 3060, 3262 |
| BseDI | CCNNGG | 2 cut(s) | 56, 363 |
| BseGI | GGATG | 7 cut(s) | 116, 175, 295, 568, 696, 2677, 3162 |
| BseJI | GATNNNNATC | 1 cut(s) | 945 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 608, 1609, 2192, 3012, 3097 |
| BseMI | GCAATG | 4 cut(s) | 461, 2052, 2064, 2161 |
| BseMII | CTCAG | 4 cut(s) | 71, 1857, 2984, 3023 |
| BseNI | ACTGG | 5 cut(s) | 1431, 1703, 2826, 2955, 3006 |
| BseRI | GAGGAG | 2 cut(s) | 2908, 3117 |
| BseXI | GCAGC | 2 cut(s) | 1602, 3209 |
| BsgI | GTGCAG | 1 cut(s) | 1017 |
| BshFI | GGCC | 5 cut(s) | 482, 1239, 1773, 2280, 3005 |
| BshNI | GGYRCC | 1 cut(s) | 2787 |
| BsiHKAI | GWGCWC | 4 cut(s) | 213, 531, 1107, 1915 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1023 |
| BsiSI | CCGG | 4 cut(s) | 41, 206, 2669, 3131 |
| BsiWI | CGTACG | 1 cut(s) | 370 |
| BslFI | GGGAC | 3 cut(s) | 1230, 2237, 2248 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 608, 1609, 2192, 3012, 3097 |
| BsmAI | GTCTC | 7 cut(s) | 1328, 1470, 1572, 1731, 1797, 2117, 2989 |
| BsmBI | CGTCTC | 1 cut(s) | 2989 |
| BsmFI | GGGAC | 3 cut(s) | 1230, 2237, 2248 |
| BsmI | GAATGC | 1 cut(s) | 2596 |
| BsnI | GGCC | 5 cut(s) | 482, 1239, 1773, 2280, 3005 |
| BsoBI | CYCGRG | 1 cut(s) | 1023 |
| Bsp119I | TTCGAA | 1 cut(s) | 2759 |
| Bsp1286I | GDGCHC | 4 cut(s) | 213, 531, 1107, 1915 |
| Bsp13I | TCCGGA | 2 cut(s) | 205, 3130 |
| Bsp1407I | TGTACA | 3 cut(s) | 2024, 2096, 2695 |
| BspACI | CCGC | 3 cut(s) | 103, 1672, 2269 |
| BspANI | GGCC | 5 cut(s) | 482, 1239, 1773, 2280, 3005 |
| BspCNI | CTCAG | 4 cut(s) | 72, 1858, 2985, 3022 |
| BspEI | TCCGGA | 2 cut(s) | 205, 3130 |
| BspLI | GGNNCC | 3 cut(s) | 886, 2789, 3089 |
| BspMAI | CTGCAG | 1 cut(s) | 2848 |
| BspPI | GGATC | 9 cut(s) | 15, 199, 954, 1140, 1950, 2524, 2715, 3023, 3185 |
| BspQI | GCTCTTC | 1 cut(s) | 1112 |
| BspT104I | TTCGAA | 1 cut(s) | 2759 |
| BspT107I | GGYRCC | 1 cut(s) | 2787 |
| BspTI | CTTAAG | 3 cut(s) | 1871, 2000, 2141 |
| BsrDI | GCAATG | 4 cut(s) | 461, 2052, 2064, 2161 |
| BsrGI | TGTACA | 3 cut(s) | 2024, 2096, 2695 |
| BsrI | ACTGG | 5 cut(s) | 1431, 1703, 2826, 2955, 3006 |
| BssECI | CCNNGG | 2 cut(s) | 56, 363 |
| BssNAI | GTATAC | 1 cut(s) | 1951 |
| BssNI | GRCGYC | 1 cut(s) | 72 |
| Bst1107I | GTATAC | 1 cut(s) | 1951 |
| Bst2UI | CCWGG | 5 cut(s) | 280, 1284, 1581, 3060, 3262 |
| Bst4CI | ACNGT | 2 cut(s) | 1221, 2096 |
| Bst6I | CTCTTC | 3 cut(s) | 39, 411, 1112 |
| BstACI | GRCGYC | 1 cut(s) | 72 |
| BstAFI | CTTAAG | 3 cut(s) | 1871, 2000, 2141 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 329 |
| BstAUI | TGTACA | 3 cut(s) | 2024, 2096, 2695 |
| BstBAI | YACGTR | 1 cut(s) | 197 |
| BstBI | TTCGAA | 1 cut(s) | 2759 |
| BstC8I | GCNNGC | 3 cut(s) | 150, 1676, 3165 |
| BstF5I | GGATG | 7 cut(s) | 116, 175, 295, 568, 696, 2677, 3162 |
| BstH2I | RGCGCY | 1 cut(s) | 222 |
| BstHHI | GCGC | 1 cut(s) | 221 |
| BstMAI | GTCTC | 7 cut(s) | 1328, 1470, 1572, 1731, 1797, 2117, 2989 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 145, 329, 656, 1045, 1599, 1876, 2068, 2277 |
| BstNI | CCWGG | 5 cut(s) | 280, 1284, 1581, 3060, 3262 |
| BstSCI | CCNGG | 6 cut(s) | 278, 1282, 1579, 2667, 3058, 3260 |
| BstSFI | CTRYAG | 1 cut(s) | 2844 |
| BstV1I | GCAGC | 2 cut(s) | 1602, 3209 |
| BstV2I | GAAGAC | 6 cut(s) | 102, 543, 713, 1427, 1826, 2315 |
| BstX2I | RGATCY | 8 cut(s) | 20, 1942, 2491, 2632, 2707, 2812, 2897, 3015 |
| BstYI | RGATCY | 8 cut(s) | 20, 1942, 2491, 2632, 2707, 2812, 2897, 3015 |
| BstZ17I | GTATAC | 1 cut(s) | 1951 |
| BsuI | GTATCC | 2 cut(s) | 1830, 2675 |
| BsuRI | GGCC | 5 cut(s) | 482, 1239, 1773, 2280, 3005 |
| BtsCI | GGATG | 7 cut(s) | 116, 175, 295, 568, 696, 2677, 3162 |
| BtsIMutI | CAGTG | 1 cut(s) | 2158 |
| Cac8I | GCNNGC | 3 cut(s) | 150, 1676, 3165 |
| CfoI | GCGC | 1 cut(s) | 221 |
| Cfr13I | GGNCC | 2 cut(s) | 53, 1772 |
| CseI | GACGC | 2 cut(s) | 446, 1596 |
| CsiI | ACCWGGT | 2 cut(s) | 278, 1579 |
| DraIII | CACNNNGTG | 1 cut(s) | 282 |
| EaeI | YGGCCR | 1 cut(s) | 480 |
| Eam1104I | CTCTTC | 3 cut(s) | 39, 411, 1112 |
| EarI | CTCTTC | 3 cut(s) | 39, 411, 1112 |
| Ecl136II | GAGCTC | 3 cut(s) | 211, 529, 1105 |
| Eco24I | GRGCYC | 3 cut(s) | 213, 531, 1107 |
| Eco32I | GATATC | 1 cut(s) | 2368 |
| Eco47I | GGWCC | 1 cut(s) | 53 |
| Eco47III | AGCGCT | 1 cut(s) | 220 |
| Eco53kI | GAGCTC | 3 cut(s) | 211, 529, 1105 |
| Eco57I | CTGAAG | 5 cut(s) | 1093, 1752, 2276, 2366, 2783 |
| Eco88I | CYCGRG | 1 cut(s) | 1023 |
| EcoICRI | GAGCTC | 3 cut(s) | 211, 529, 1105 |
| EcoO109I | RGGNCCY | 1 cut(s) | 53 |
| EcoRII | CCWGG | 5 cut(s) | 278, 1282, 1579, 3058, 3260 |
| EcoRV | GATATC | 1 cut(s) | 2368 |
| EcoT22I | ATGCAT | 2 cut(s) | 414, 1524 |
| EcoT38I | GRGCYC | 3 cut(s) | 213, 531, 1107 |
| Esp3I | CGTCTC | 1 cut(s) | 2989 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 890, 922, 2265, 2297, 2339, 2371 |
| FaqI | GGGAC | 3 cut(s) | 1230, 2237, 2248 |
| FauI | CCCGC | 1 cut(s) | 110 |
| FauNDI | CATATG | 3 cut(s) | 1608, 1840, 2336 |
| FblI | GTMKAC | 3 cut(s) | 435, 1585, 1950 |
| Fnu4HI | GCNGC | 2 cut(s) | 1591, 3198 |
| FokI | GGATG | 7 cut(s) | 103, 182, 302, 555, 703, 2684, 3169 |
| FriOI | GRGCYC | 3 cut(s) | 213, 531, 1107 |
| Fsp4HI | GCNGC | 2 cut(s) | 1591, 3198 |
| GlaI | GCGC | 1 cut(s) | 220 |
| GluI | GCNGC | 2 cut(s) | 1591, 3198 |
| GsuI | CTGGAG | 2 cut(s) | 1121, 2356 |
| HaeII | RGCGCY | 1 cut(s) | 222 |
| HaeIII | GGCC | 5 cut(s) | 482, 1239, 1773, 2280, 3005 |
| HapII | CCGG | 4 cut(s) | 41, 206, 2669, 3131 |
| HgaI | GACGC | 2 cut(s) | 446, 1596 |
| HhaI | GCGC | 1 cut(s) | 221 |
| Hin1I | GRCGYC | 1 cut(s) | 72 |
| Hin6I | GCGC | 1 cut(s) | 219 |
| HinP1I | GCGC | 1 cut(s) | 219 |
| HincII | GTYRAC | 3 cut(s) | 436, 1586, 2956 |
| HindII | GTYRAC | 3 cut(s) | 436, 1586, 2956 |
| HpaII | CCGG | 4 cut(s) | 41, 206, 2669, 3131 |
| HphI | GGTGA | 4 cut(s) | 104, 397, 460, 2511 |
| Hpy166II | GTNNAC | 7 cut(s) | 436, 894, 1586, 1759, 1951, 2612, 2956 |
| Hpy8I | GTNNAC | 7 cut(s) | 436, 894, 1586, 1759, 1951, 2612, 2956 |
| Hpy99I | CGWCG | 3 cut(s) | 74, 440, 1590 |
| HpyCH4III | ACNGT | 2 cut(s) | 1221, 2096 |
| HpyCH4IV | ACGT | 5 cut(s) | 72, 196, 369, 1033, 1512 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 145, 329, 656, 1045, 1599, 1876, 2068, 2277 |
| HpySE526I | ACGT | 5 cut(s) | 72, 196, 369, 1033, 1512 |
| Hsp92I | GRCGYC | 1 cut(s) | 72 |
| HspAI | GCGC | 1 cut(s) | 219 |
| Kpn2I | TCCGGA | 2 cut(s) | 205, 3130 |
| LguI | GCTCTTC | 1 cut(s) | 1112 |
| LmnI | GCTCC | 6 cut(s) | 208, 1102, 1910, 2005, 2621, 3118 |
| Lsp1109I | GCAGC | 2 cut(s) | 1602, 3209 |
| LweI | GCATC | 5 cut(s) | 38, 1509, 1866, 2366, 2754 |
| MabI | ACCWGGT | 2 cut(s) | 278, 1579 |
| MaeII | ACGT | 5 cut(s) | 72, 196, 369, 1033, 1512 |
| MaeIII | GTNAC | 3 cut(s) | 2214, 2728, 3032 |
| MfeI | CAATTG | 3 cut(s) | 243, 2262, 2938 |
| MflI | RGATCY | 8 cut(s) | 20, 1942, 2491, 2632, 2707, 2812, 2897, 3015 |
| MhlI | GDGCHC | 4 cut(s) | 213, 531, 1107, 1915 |
| MlsI | TGGCCA | 1 cut(s) | 482 |
| MluNI | TGGCCA | 1 cut(s) | 482 |
| MlyI | GAGTC | 7 cut(s) | 471, 611, 1017, 1574, 2119, 2578, 3245 |
| MmeI | TCCRAC | 2 cut(s) | 589, 2685 |
| Mox20I | TGGCCA | 1 cut(s) | 482 |
| Mph1103I | ATGCAT | 2 cut(s) | 414, 1524 |
| MroI | TCCGGA | 2 cut(s) | 205, 3130 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1554, 2983 |
| MscI | TGGCCA | 1 cut(s) | 482 |
| MseI | TTAA | 9 cut(s) | 470, 579, 1082, 1206, 1872, 2001, 2142, 2157, 2283 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1511, 2057, 2304, 3151 |
| Msp20I | TGGCCA | 1 cut(s) | 482 |
| MspA1I | CMGCKG | 1 cut(s) | 2362 |
| MspCI | CTTAAG | 3 cut(s) | 1871, 2000, 2141 |
| MspI | CCGG | 4 cut(s) | 41, 206, 2669, 3131 |
| MspR9I | CCNGG | 6 cut(s) | 280, 1284, 1581, 2669, 3060, 3262 |
| MunI | CAATTG | 3 cut(s) | 243, 2262, 2938 |
| Mva1269I | GAATGC | 1 cut(s) | 2596 |
| MvaI | CCWGG | 5 cut(s) | 280, 1284, 1581, 3060, 3262 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 145, 329, 656, 1045, 1599, 1876, 2068, 2277 |
| NciI | CCSGG | 1 cut(s) | 2669 |
| NdeI | CATATG | 3 cut(s) | 1608, 1840, 2336 |
| NlaIV | GGNNCC | 3 cut(s) | 886, 2789, 3089 |
| NmeAIII | GCCGAG | 1 cut(s) | 1265 |
| NsiI | ATGCAT | 2 cut(s) | 414, 1524 |
| NspV | TTCGAA | 1 cut(s) | 2759 |
| OliI | CACNNNNGTG | 1 cut(s) | 1511 |
| PaeR7I | CTCGAG | 1 cut(s) | 1023 |
| PciSI | GCTCTTC | 1 cut(s) | 1112 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 379, 1030, 1591 |
| PctI | GAATGC | 1 cut(s) | 2596 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1554, 2983 |
| PfeI | GAWTC | 9 cut(s) | 47, 230, 500, 590, 2135, 2182, 2761, 3104, 3134 |
| Pfl23II | CGTACG | 1 cut(s) | 370 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1609, 2192 |
| PfoI | TCCNGGA | 2 cut(s) | 2667, 3058 |
| PkrI | GCNGC | 2 cut(s) | 1592, 3199 |
| PleI | GAGTC | 7 cut(s) | 470, 611, 1016, 1573, 2118, 2577, 3245 |
| PpsI | GAGTC | 7 cut(s) | 470, 611, 1016, 1573, 2118, 2577, 3245 |
| Ppu21I | YACGTR | 1 cut(s) | 197 |
| PpuMI | RGGWCCY | 1 cut(s) | 53 |
| PsiI | TTATAA | 1 cut(s) | 1068 |
| Psp124BI | GAGCTC | 3 cut(s) | 213, 531, 1107 |
| Psp5II | RGGWCCY | 1 cut(s) | 53 |
| Psp6I | CCWGG | 5 cut(s) | 278, 1282, 1579, 3058, 3260 |
| PspGI | CCWGG | 5 cut(s) | 278, 1282, 1579, 3058, 3260 |
| PspLI | CGTACG | 1 cut(s) | 370 |
| PspN4I | GGNNCC | 3 cut(s) | 886, 2789, 3089 |
| PspPI | GGNCC | 2 cut(s) | 53, 1772 |
| PspPPI | RGGWCCY | 1 cut(s) | 53 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 877, 909 |
| PstI | CTGCAG | 1 cut(s) | 2848 |
| PsuI | RGATCY | 8 cut(s) | 20, 1942, 2491, 2632, 2707, 2812, 2897, 3015 |
| PvuII | CAGCTG | 1 cut(s) | 2362 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1511, 2057, 2304, 3151 |
| SacI | GAGCTC | 3 cut(s) | 213, 531, 1107 |
| SalI | GTCGAC | 2 cut(s) | 434, 1584 |
| SapI | GCTCTTC | 1 cut(s) | 1112 |
| SaqAI | TTAA | 9 cut(s) | 470, 579, 1082, 1206, 1872, 2001, 2142, 2157, 2283 |
| SatI | GCNGC | 2 cut(s) | 1591, 3198 |
| Sau96I | GGNCC | 2 cut(s) | 53, 1772 |
| ScaI | AGTACT | 1 cut(s) | 2502 |
| SchI | GAGTC | 7 cut(s) | 471, 611, 1017, 1574, 2119, 2578, 3245 |
| ScrFI | CCNGG | 6 cut(s) | 280, 1284, 1581, 2669, 3060, 3262 |
| SduI | GDGCHC | 4 cut(s) | 213, 531, 1107, 1915 |
| SexAI | ACCWGGT | 2 cut(s) | 278, 1579 |
| SfaNI | GCATC | 5 cut(s) | 38, 1509, 1866, 2366, 2754 |
| SfcI | CTRYAG | 1 cut(s) | 2844 |
| Sfr274I | CTCGAG | 1 cut(s) | 1023 |
| SfuI | TTCGAA | 1 cut(s) | 2759 |
| SinI | GGWCC | 1 cut(s) | 53 |
| SlaI | CTCGAG | 1 cut(s) | 1023 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1511, 2057, 2304, 3151 |
| SmlI | CTYRAG | 9 cut(s) | 214, 651, 907, 1023, 1655, 1871, 2000, 2072, 2141 |
| SmoI | CTYRAG | 9 cut(s) | 214, 651, 907, 1023, 1655, 1871, 2000, 2072, 2141 |
| SsiI | CCGC | 3 cut(s) | 103, 1672, 2269 |
| SspI | AATATT | 4 cut(s) | 345, 2650, 2982, 3049 |
| SstI | GAGCTC | 3 cut(s) | 213, 531, 1107 |
| StyD4I | CCNGG | 6 cut(s) | 278, 1282, 1579, 2667, 3058, 3260 |
| TaaI | ACNGT | 2 cut(s) | 1221, 2096 |
| TaiI | ACGT | 5 cut(s) | 75, 199, 372, 1036, 1515 |
| TaqI | TCGA | 9 cut(s) | 226, 309, 435, 534, 1024, 1585, 2017, 2453, 2759 |
| TaqII | GACCGA | 1 cut(s) | 189 |
| TatI | WGTACW | 4 cut(s) | 2024, 2096, 2500, 2695 |
| TfiI | GAWTC | 9 cut(s) | 47, 230, 500, 590, 2135, 2182, 2761, 3104, 3134 |
| Tru1I | TTAA | 9 cut(s) | 470, 579, 1082, 1206, 1872, 2001, 2142, 2157, 2283 |
| Tru9I | TTAA | 9 cut(s) | 470, 579, 1082, 1206, 1872, 2001, 2142, 2157, 2283 |
| TscAI | CASTG | 1 cut(s) | 2158 |
| TseI | GCWGC | 2 cut(s) | 1590, 3197 |
| TspRI | CASTG | 1 cut(s) | 2158 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1609, 2192 |
| Vha464I | CTTAAG | 3 cut(s) | 1871, 2000, 2141 |
| VpaK11BI | GGWCC | 1 cut(s) | 53 |
| XapI | RAATTY | 7 cut(s) | 738, 1293, 1745, 2189, 2209, 2384, 3069 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 283, 721 |
| XhoI | CTCGAG | 1 cut(s) | 1023 |
| XmiI | GTMKAC | 3 cut(s) | 435, 1585, 1950 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1554, 2983 |
| ZraI | GACGTC | 1 cut(s) | 73 |
| ZrmI | AGTACT | 1 cut(s) | 2502 |
| Zsp2I | ATGCAT | 2 cut(s) | 414, 1524 |