TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 205 | 6e-51 | TIR domain |
| TIR_2 | PF13676 | 25 - 136 | 1.6e-15 | TIR domain |
| NB-ARC | PF00931 | 219 - 371 | 8.4e-21 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 446 - 497 | 1.3e-09 | Disease resistance protein Roq1-like, winged-helix domain |
| C-JID | PF20160 | 984 - 1120 | 1.7e-09 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 513, 2222, 3294 |
| AatII | GACGTC | 1 cut(s) | 75 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2117, 3157 |
| AccBSI | CCGCTC | 1 cut(s) | 2879 |
| AccII | CGCG | 2 cut(s) | 132, 3287 |
| AccIII | TCCGGA | 2 cut(s) | 205, 3019 |
| AclWI | GGATC | 9 cut(s) | 356, 369, 1415, 1878, 1947, 2392, 2694, 3030, 3158 |
| AcoI | YGGCCR | 4 cut(s) | 480, 951, 1778, 2874 |
| AcuI | CTGAAG | 2 cut(s) | 615, 1820 |
| AcyI | GRCGYC | 2 cut(s) | 72, 402 |
| AdeI | CACNNNGTG | 2 cut(s) | 282, 421 |
| AfaI | GTAC | 6 cut(s) | 731, 857, 1208, 1455, 2789, 3347 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 720, 1124, 1831, 2117, 2474, 2782, 3157, 3435, 3440 |
| AflII | CTTAAG | 1 cut(s) | 2737 |
| AflIII | ACRYGT | 1 cut(s) | 550 |
| AjnI | CCWGG | 6 cut(s) | 2363, 2473, 2950, 3112, 3246, 3433 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1223, 1255, 2184, 2216 |
| Alw21I | GWGCWC | 3 cut(s) | 14, 213, 1086 |
| Alw26I | GTCTC | 7 cut(s) | 1019, 1892, 2081, 2243, 2336, 2571, 2904 |
| AlwI | GGATC | 9 cut(s) | 356, 369, 1415, 1878, 1947, 2392, 2694, 3030, 3158 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 593, 2450 |
| Ama87I | CYCGRG | 1 cut(s) | 2069 |
| Aor13HI | TCCGGA | 2 cut(s) | 205, 3019 |
| AoxI | GGCC | 7 cut(s) | 480, 951, 1699, 1778, 2203, 2874, 3426 |
| ApeKI | GCWGC | 5 cut(s) | 390, 1512, 2091, 3013, 3261 |
| AseI | ATTAAT | 2 cut(s) | 1661, 2649 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 161, 1170, 1476, 2854 |
| AspLEI | GCGC | 1 cut(s) | 3289 |
| AspS9I | GGNCC | 5 cut(s) | 782, 1700, 1969, 2160, 3443 |
| AsuC2I | CCSGG | 1 cut(s) | 1503 |
| AsuHPI | GGTGA | 7 cut(s) | 42, 104, 249, 831, 986, 1012, 2927 |
| AsuII | TTCGAA | 1 cut(s) | 1104 |
| AvaI | CYCGRG | 1 cut(s) | 2069 |
| AvaII | GGWCC | 4 cut(s) | 782, 1969, 2160, 3443 |
| AxyI | CCTNAGG | 1 cut(s) | 654 |
| BalI | TGGCCA | 1 cut(s) | 482 |
| BamHI | GGATCC | 1 cut(s) | 361 |
| BanII | GRGCYC | 3 cut(s) | 213, 1086, 1503 |
| BauI | CACGAG | 2 cut(s) | 1491, 3075 |
| BbsI | GAAGAC | 6 cut(s) | 67, 102, 1499, 1846, 2140, 2600 |
| Bbv12I | GWGCWC | 3 cut(s) | 14, 213, 1086 |
| BbvI | GCAGC | 5 cut(s) | 402, 1524, 2078, 3000, 3248 |
| BceAI | ACGGC | 1 cut(s) | 2548 |
| BciT130I | CCWGG | 6 cut(s) | 2365, 2475, 2952, 3114, 3248, 3435 |
| BciVI | GTATCC | 2 cut(s) | 1758, 3244 |
| BclI | TGATCA | 2 cut(s) | 433, 775 |
| BcnI | CCSGG | 1 cut(s) | 1503 |
| BcoDI | GTCTC | 7 cut(s) | 1019, 1892, 2081, 2243, 2336, 2571, 2904 |
| BfmI | CTRYAG | 3 cut(s) | 137, 1416, 2142 |
| BfrI | CTTAAG | 1 cut(s) | 2737 |
| BfuI | GTATCC | 2 cut(s) | 1758, 3244 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2365 |
| BglII | AGATCT | 1 cut(s) | 1216 |
| BisI | GCNGC | 8 cut(s) | 391, 1513, 1516, 2092, 2357, 2877, 3014, 3262 |
| BlpI | GCTNAGC | 1 cut(s) | 411 |
| BlsI | GCNGC | 8 cut(s) | 392, 1514, 1517, 2093, 2358, 2878, 3015, 3263 |
| Bme1390I | CCNGG | 7 cut(s) | 1503, 2365, 2475, 2952, 3114, 3248, 3435 |
| Bme18I | GGWCC | 4 cut(s) | 782, 1969, 2160, 3443 |
| BmeT110I | CYCGRG | 1 cut(s) | 2069 |
| BmgT120I | GGNCC | 5 cut(s) | 782, 1700, 1969, 2160, 3443 |
| BmiI | GGNNCC | 5 cut(s) | 193, 363, 865, 1702, 2161 |
| BmrFI | CCNGG | 7 cut(s) | 1503, 2365, 2475, 2952, 3114, 3248, 3435 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2804 |
| BpiI | GAAGAC | 6 cut(s) | 67, 102, 1499, 1846, 2140, 2600 |
| BpmI | CTGGAG | 2 cut(s) | 2225, 2457 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1177, 2880 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 411 |
| Bpu14I | TTCGAA | 1 cut(s) | 1104 |
| BpuEI | CTTGAG | 5 cut(s) | 100, 235, 1100, 1949, 3482 |
| BpuMI | CCSGG | 1 cut(s) | 1503 |
| BsaHI | GRCGYC | 2 cut(s) | 72, 402 |
| BsaI | GGTCTC | 1 cut(s) | 1892 |
| BsaJI | CCNNGG | 5 cut(s) | 315, 625, 2474, 3113, 3434 |
| BsaWI | WCCGGW | 3 cut(s) | 205, 2683, 3019 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 8, 38, 2673, 2703 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 720, 1124, 1831, 2117, 2474, 2782, 3157, 3435, 3440 |
| Bse1I | ACTGG | 3 cut(s) | 195, 842, 1311 |
| Bse21I | CCTNAGG | 1 cut(s) | 654 |
| Bse3DI | GCAATG | 3 cut(s) | 1338, 1980, 3107 |
| BseAI | TCCGGA | 2 cut(s) | 205, 3019 |
| BseBI | CCWGG | 6 cut(s) | 2365, 2475, 2952, 3114, 3248, 3435 |
| BseDI | CCNNGG | 5 cut(s) | 315, 625, 2474, 3113, 3434 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 720, 1124, 1831, 2117, 2474, 2782, 3157, 3435, 3440 |
| BseMI | GCAATG | 3 cut(s) | 1338, 1980, 3107 |
| BseMII | CTCAG | 5 cut(s) | 645, 753, 2092, 2894, 3432 |
| BseNI | ACTGG | 3 cut(s) | 195, 842, 1311 |
| BseRI | GAGGAG | 4 cut(s) | 1007, 1946, 3359, 3437 |
| BseXI | GCAGC | 5 cut(s) | 402, 1524, 2078, 3000, 3248 |
| BseYI | CCCAGC | 1 cut(s) | 105 |
| Bsh1236I | CGCG | 2 cut(s) | 132, 3287 |
| BshFI | GGCC | 7 cut(s) | 482, 953, 1701, 1780, 2205, 2876, 3428 |
| BsiHKAI | GWGCWC | 3 cut(s) | 14, 213, 1086 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2069 |
| BsiSI | CCGG | 7 cut(s) | 206, 954, 1503, 1777, 1825, 2684, 3020 |
| BslFI | GGGAC | 1 cut(s) | 2173 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 720, 1124, 1831, 2117, 2474, 2782, 3157, 3435, 3440 |
| BsmAI | GTCTC | 7 cut(s) | 1019, 1892, 2081, 2243, 2336, 2571, 2904 |
| BsmBI | CGTCTC | 3 cut(s) | 1019, 2571, 2904 |
| BsmFI | GGGAC | 1 cut(s) | 2173 |
| BsmI | GAATGC | 2 cut(s) | 1343, 1643 |
| BsnI | GGCC | 7 cut(s) | 482, 953, 1701, 1780, 2205, 2876, 3428 |
| Bso31I | GGTCTC | 1 cut(s) | 1892 |
| BsoBI | CYCGRG | 1 cut(s) | 2069 |
| Bsp119I | TTCGAA | 1 cut(s) | 1104 |
| Bsp1286I | GDGCHC | 4 cut(s) | 14, 213, 1086, 1503 |
| Bsp13I | TCCGGA | 2 cut(s) | 205, 3019 |
| Bsp1407I | TGTACA | 1 cut(s) | 1206 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 411 |
| Bsp19I | CCATGG | 1 cut(s) | 315 |
| BspANI | GGCC | 7 cut(s) | 482, 953, 1701, 1780, 2205, 2876, 3428 |
| BspCNI | CTCAG | 5 cut(s) | 646, 754, 2091, 2893, 3431 |
| BspEI | TCCGGA | 2 cut(s) | 205, 3019 |
| BspFNI | CGCG | 2 cut(s) | 132, 3287 |
| BspHI | TCATGA | 1 cut(s) | 1551 |
| BspLI | GGNNCC | 5 cut(s) | 193, 363, 865, 1702, 2161 |
| BspMAI | CTGCAG | 2 cut(s) | 141, 2146 |
| BspPI | GGATC | 9 cut(s) | 356, 369, 1415, 1878, 1947, 2392, 2694, 3030, 3158 |
| BspQI | GCTCTTC | 1 cut(s) | 1491 |
| BspT104I | TTCGAA | 1 cut(s) | 1104 |
| BspTI | CTTAAG | 1 cut(s) | 2737 |
| BspTNI | GGTCTC | 1 cut(s) | 1892 |
| BsrBI | CCGCTC | 1 cut(s) | 2879 |
| BsrDI | GCAATG | 3 cut(s) | 1338, 1980, 3107 |
| BsrGI | TGTACA | 1 cut(s) | 1206 |
| BsrI | ACTGG | 3 cut(s) | 195, 842, 1311 |
| BssECI | CCNNGG | 5 cut(s) | 315, 625, 2474, 3113, 3434 |
| BssNI | GRCGYC | 2 cut(s) | 72, 402 |
| BssSI | CACGAG | 2 cut(s) | 1491, 3075 |
| BssT1I | CCWWGG | 2 cut(s) | 315, 625 |
| Bst2BI | CACGAG | 2 cut(s) | 1491, 3075 |
| Bst2UI | CCWGG | 6 cut(s) | 2365, 2475, 2952, 3114, 3248, 3435 |
| Bst4CI | ACNGT | 6 cut(s) | 1958, 2007, 2487, 2577, 2806, 3007 |
| Bst6I | CTCTTC | 5 cut(s) | 1491, 1605, 1767, 2651, 3317 |
| BstACI | GRCGYC | 2 cut(s) | 72, 402 |
| BstAFI | CTTAAG | 1 cut(s) | 2737 |
| BstAUI | TGTACA | 1 cut(s) | 1206 |
| BstBI | TTCGAA | 1 cut(s) | 1104 |
| BstC8I | GCNNGC | 4 cut(s) | 150, 1586, 2361, 2561 |
| BstDSI | CCRYGG | 1 cut(s) | 315 |
| BstFNI | CGCG | 2 cut(s) | 132, 3287 |
| BstHHI | GCGC | 1 cut(s) | 3289 |
| BstMAI | GTCTC | 7 cut(s) | 1019, 1892, 2081, 2243, 2336, 2571, 2904 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 145, 2150, 2365, 2421 |
| BstNI | CCWGG | 6 cut(s) | 2365, 2475, 2952, 3114, 3248, 3435 |
| BstNSI | RCATGY | 1 cut(s) | 1588 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2804 |
| BstSCI | CCNGG | 7 cut(s) | 1501, 2363, 2473, 2950, 3112, 3246, 3433 |
| BstSFI | CTRYAG | 3 cut(s) | 137, 1416, 2142 |
| BstUI | CGCG | 2 cut(s) | 132, 3287 |
| BstV1I | GCAGC | 5 cut(s) | 402, 1524, 2078, 3000, 3248 |
| BstV2I | GAAGAC | 6 cut(s) | 67, 102, 1499, 1846, 2140, 2600 |
| BstX2I | RGATCY | 7 cut(s) | 361, 1216, 1420, 1870, 1939, 2686, 3163 |
| BstYI | RGATCY | 7 cut(s) | 361, 1216, 1420, 1870, 1939, 2686, 3163 |
| Bsu36I | CCTNAGG | 1 cut(s) | 654 |
| BsuI | GTATCC | 2 cut(s) | 1758, 3244 |
| BsuRI | GGCC | 7 cut(s) | 482, 953, 1701, 1780, 2205, 2876, 3428 |
| BtgI | CCRYGG | 1 cut(s) | 315 |
| BtsI | GCAGTG | 1 cut(s) | 1992 |
| BtsIMutI | CAGTG | 3 cut(s) | 436, 1304, 1992 |
| Cac8I | GCNNGC | 4 cut(s) | 150, 1586, 2361, 2561 |
| CaiI | CAGNNNCTG | 2 cut(s) | 593, 2450 |
| CciI | TCATGA | 1 cut(s) | 1551 |
| CfoI | GCGC | 1 cut(s) | 3289 |
| Cfr13I | GGNCC | 5 cut(s) | 782, 1700, 1969, 2160, 3443 |
| CseI | GACGC | 5 cut(s) | 410, 557, 1016, 3221, 3293 |
| Csp6I | GTAC | 6 cut(s) | 730, 856, 1207, 1454, 2788, 3346 |
| CviQI | GTAC | 6 cut(s) | 730, 856, 1207, 1454, 2788, 3346 |
| DraI | TTTAAA | 3 cut(s) | 2269, 2431, 3490 |
| DraIII | CACNNNGTG | 2 cut(s) | 282, 421 |
| EaeI | YGGCCR | 4 cut(s) | 480, 951, 1778, 2874 |
| Eam1104I | CTCTTC | 5 cut(s) | 1491, 1605, 1767, 2651, 3317 |
| EarI | CTCTTC | 5 cut(s) | 1491, 1605, 1767, 2651, 3317 |
| Ecl136II | GAGCTC | 2 cut(s) | 211, 1084 |
| Eco130I | CCWWGG | 2 cut(s) | 315, 625 |
| Eco24I | GRGCYC | 3 cut(s) | 213, 1086, 1503 |
| Eco31I | GGTCTC | 1 cut(s) | 1892 |
| Eco47I | GGWCC | 4 cut(s) | 782, 1969, 2160, 3443 |
| Eco53kI | GAGCTC | 2 cut(s) | 211, 1084 |
| Eco57I | CTGAAG | 2 cut(s) | 615, 1820 |
| Eco81I | CCTNAGG | 1 cut(s) | 654 |
| Eco88I | CYCGRG | 1 cut(s) | 2069 |
| EcoICRI | GAGCTC | 2 cut(s) | 211, 1084 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1700 |
| EcoRI | GAATTC | 1 cut(s) | 336 |
| EcoRII | CCWGG | 6 cut(s) | 2363, 2473, 2950, 3112, 3246, 3433 |
| EcoT14I | CCWWGG | 2 cut(s) | 315, 625 |
| EcoT22I | ATGCAT | 1 cut(s) | 1446 |
| EcoT38I | GRGCYC | 3 cut(s) | 213, 1086, 1503 |
| ErhI | CCWWGG | 2 cut(s) | 315, 625 |
| Esp3I | CGTCTC | 3 cut(s) | 1019, 2571, 2904 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1615, 1647 |
| FaqI | GGGAC | 1 cut(s) | 2173 |
| FauI | CCCGC | 2 cut(s) | 110, 2487 |
| FbaI | TGATCA | 2 cut(s) | 433, 775 |
| Fnu4HI | GCNGC | 8 cut(s) | 391, 1513, 1516, 2092, 2357, 2877, 3014, 3262 |
| FriOI | GRGCYC | 3 cut(s) | 213, 1086, 1503 |
| Fsp4HI | GCNGC | 8 cut(s) | 391, 1513, 1516, 2092, 2357, 2877, 3014, 3262 |
| GlaI | GCGC | 1 cut(s) | 3288 |
| GluI | GCNGC | 8 cut(s) | 391, 1513, 1516, 2092, 2357, 2877, 3014, 3262 |
| GsaI | CCCAGC | 1 cut(s) | 109 |
| GsuI | CTGGAG | 2 cut(s) | 2225, 2457 |
| HaeIII | GGCC | 7 cut(s) | 482, 953, 1701, 1780, 2205, 2876, 3428 |
| HapII | CCGG | 7 cut(s) | 206, 954, 1503, 1777, 1825, 2684, 3020 |
| HgaI | GACGC | 5 cut(s) | 410, 557, 1016, 3221, 3293 |
| HhaI | GCGC | 1 cut(s) | 3289 |
| Hin1I | GRCGYC | 2 cut(s) | 72, 402 |
| Hin6I | GCGC | 1 cut(s) | 3287 |
| HinP1I | GCGC | 1 cut(s) | 3287 |
| HincII | GTYRAC | 1 cut(s) | 2010 |
| HindII | GTYRAC | 1 cut(s) | 2010 |
| HindIII | AAGCTT | 5 cut(s) | 465, 1997, 2402, 2582, 2636 |
| HpaII | CCGG | 7 cut(s) | 206, 954, 1503, 1777, 1825, 2684, 3020 |
| HphI | GGTGA | 7 cut(s) | 42, 104, 249, 831, 986, 1012, 2927 |
| Hpy166II | GTNNAC | 6 cut(s) | 730, 785, 1598, 1990, 2010, 3125 |
| Hpy8I | GTNNAC | 6 cut(s) | 730, 785, 1598, 1990, 2010, 3125 |
| Hpy99I | CGWCG | 6 cut(s) | 74, 374, 1032, 2546, 3237, 3287 |
| HpyCH4III | ACNGT | 6 cut(s) | 1958, 2007, 2487, 2577, 2806, 3007 |
| HpyCH4IV | ACGT | 5 cut(s) | 72, 372, 550, 958, 1012 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 145, 2150, 2365, 2421 |
| HpySE526I | ACGT | 5 cut(s) | 72, 372, 550, 958, 1012 |
| Hsp92I | GRCGYC | 2 cut(s) | 72, 402 |
| HspAI | GCGC | 1 cut(s) | 3287 |
| Kpn2I | TCCGGA | 2 cut(s) | 205, 3019 |
| Ksp22I | TGATCA | 2 cut(s) | 433, 775 |
| LguI | GCTCTTC | 1 cut(s) | 1491 |
| LmnI | GCTCC | 5 cut(s) | 191, 208, 387, 655, 3010 |
| Lsp1109I | GCAGC | 5 cut(s) | 402, 1524, 2078, 3000, 3248 |
| MaeII | ACGT | 5 cut(s) | 72, 372, 550, 958, 1012 |
| MaeIII | GTNAC | 8 cut(s) | 932, 994, 1091, 1361, 1877, 1952, 2254, 3413 |
| MbiI | CCGCTC | 1 cut(s) | 2879 |
| MfeI | CAATTG | 4 cut(s) | 2187, 2809, 3453, 3459 |
| MflI | RGATCY | 7 cut(s) | 361, 1216, 1420, 1870, 1939, 2686, 3163 |
| MhlI | GDGCHC | 4 cut(s) | 14, 213, 1086, 1503 |
| MlsI | TGGCCA | 1 cut(s) | 482 |
| MluNI | TGGCCA | 1 cut(s) | 482 |
| MlyI | GAGTC | 6 cut(s) | 320, 1874, 2449, 3409, 3410, 3489 |
| MmeI | TCCRAC | 5 cut(s) | 41, 393, 589, 1917, 2639 |
| Mox20I | TGGCCA | 1 cut(s) | 482 |
| Mph1103I | ATGCAT | 1 cut(s) | 1446 |
| MroI | TCCGGA | 2 cut(s) | 205, 3019 |
| MroXI | GAANNNNTTC | 4 cut(s) | 161, 1170, 1476, 2854 |
| MscI | TGGCCA | 1 cut(s) | 482 |
| MslI | CAYNNNNRTG | 5 cut(s) | 753, 1431, 1530, 1985, 3294 |
| Msp20I | TGGCCA | 1 cut(s) | 482 |
| MspA1I | CMGCKG | 2 cut(s) | 105, 1769 |
| MspCI | CTTAAG | 1 cut(s) | 2737 |
| MspI | CCGG | 7 cut(s) | 206, 954, 1503, 1777, 1825, 2684, 3020 |
| MspR9I | CCNGG | 7 cut(s) | 1503, 2365, 2475, 2952, 3114, 3248, 3435 |
| MunI | CAATTG | 4 cut(s) | 2187, 2809, 3453, 3459 |
| Mva1269I | GAATGC | 2 cut(s) | 1343, 1643 |
| MvaI | CCWGG | 6 cut(s) | 2365, 2475, 2952, 3114, 3248, 3435 |
| MvnI | CGCG | 2 cut(s) | 132, 3287 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 145, 2150, 2365, 2421 |
| NciI | CCSGG | 1 cut(s) | 1503 |
| NcoI | CCATGG | 1 cut(s) | 315 |
| NlaIV | GGNNCC | 5 cut(s) | 193, 363, 865, 1702, 2161 |
| NmeAIII | GCCGAG | 1 cut(s) | 3454 |
| NmuCI | GTSAC | 6 cut(s) | 932, 1091, 1361, 1877, 1952, 3413 |
| NsiI | ATGCAT | 1 cut(s) | 1446 |
| NspI | RCATGY | 1 cut(s) | 1588 |
| NspV | TTCGAA | 1 cut(s) | 1104 |
| PaeI | GCATGC | 1 cut(s) | 1588 |
| PaeR7I | CTCGAG | 1 cut(s) | 2069 |
| PagI | TCATGA | 1 cut(s) | 1551 |
| PciSI | GCTCTTC | 1 cut(s) | 1491 |
| PctI | GAATGC | 2 cut(s) | 1343, 1643 |
| PdmI | GAANNNNTTC | 4 cut(s) | 161, 1170, 1476, 2854 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2117, 3157 |
| PfoI | TCCNGGA | 2 cut(s) | 2950, 3246 |
| PkrI | GCNGC | 8 cut(s) | 392, 1514, 1517, 2093, 2358, 2878, 3015, 3263 |
| PleI | GAGTC | 6 cut(s) | 319, 1874, 2448, 3408, 3410, 3489 |
| PpsI | GAGTC | 6 cut(s) | 319, 1874, 2448, 3408, 3410, 3489 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2804 |
| PshBI | ATTAAT | 2 cut(s) | 1661, 2649 |
| PsiI | TTATAA | 3 cut(s) | 513, 2222, 3294 |
| Psp124BI | GAGCTC | 2 cut(s) | 213, 1086 |
| Psp6I | CCWGG | 6 cut(s) | 2363, 2473, 2950, 3112, 3246, 3433 |
| PspFI | CCCAGC | 1 cut(s) | 105 |
| PspGI | CCWGG | 6 cut(s) | 2363, 2473, 2950, 3112, 3246, 3433 |
| PspN4I | GGNNCC | 5 cut(s) | 193, 363, 865, 1702, 2161 |
| PspPI | GGNCC | 5 cut(s) | 782, 1700, 1969, 2160, 3443 |
| PstI | CTGCAG | 2 cut(s) | 141, 2146 |
| PstNI | CAGNNNCTG | 2 cut(s) | 593, 2450 |
| PsuI | RGATCY | 7 cut(s) | 361, 1216, 1420, 1870, 1939, 2686, 3163 |
| PvuII | CAGCTG | 1 cut(s) | 1769 |
| RsaI | GTAC | 6 cut(s) | 731, 857, 1208, 1455, 2789, 3347 |
| RsaNI | GTAC | 6 cut(s) | 730, 856, 1207, 1454, 2788, 3346 |
| RseI | CAYNNNNRTG | 5 cut(s) | 753, 1431, 1530, 1985, 3294 |
| SacI | GAGCTC | 2 cut(s) | 213, 1086 |
| SapI | GCTCTTC | 1 cut(s) | 1491 |
| SatI | GCNGC | 8 cut(s) | 391, 1513, 1516, 2092, 2357, 2877, 3014, 3262 |
| Sau96I | GGNCC | 5 cut(s) | 782, 1700, 1969, 2160, 3443 |
| SchI | GAGTC | 6 cut(s) | 320, 1874, 2449, 3409, 3410, 3489 |
| ScrFI | CCNGG | 7 cut(s) | 1503, 2365, 2475, 2952, 3114, 3248, 3435 |
| SduI | GDGCHC | 4 cut(s) | 14, 213, 1086, 1503 |
| SfcI | CTRYAG | 3 cut(s) | 137, 1416, 2142 |
| Sfr274I | CTCGAG | 1 cut(s) | 2069 |
| SfuI | TTCGAA | 1 cut(s) | 1104 |
| SinI | GGWCC | 4 cut(s) | 782, 1969, 2160, 3443 |
| SlaI | CTCGAG | 1 cut(s) | 2069 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 753, 1431, 1530, 1985, 3294 |
| SmlI | CTYRAG | 7 cut(s) | 79, 214, 1079, 1928, 2069, 2737, 3497 |
| SmoI | CTYRAG | 7 cut(s) | 79, 214, 1079, 1928, 2069, 2737, 3497 |
| SphI | GCATGC | 1 cut(s) | 1588 |
| SspI | AATATT | 3 cut(s) | 835, 2853, 3410 |
| SstI | GAGCTC | 2 cut(s) | 213, 1086 |
| StyD4I | CCNGG | 7 cut(s) | 1501, 2363, 2473, 2950, 3112, 3246, 3433 |
| StyI | CCWWGG | 2 cut(s) | 315, 625 |
| TaaI | ACNGT | 6 cut(s) | 1958, 2007, 2487, 2577, 2806, 3007 |
| TaiI | ACGT | 5 cut(s) | 75, 375, 553, 961, 1015 |
| TatI | WGTACW | 2 cut(s) | 855, 1206 |
| TauI | GCSGC | 3 cut(s) | 1518, 2359, 2879 |
| TscAI | CASTG | 3 cut(s) | 436, 1311, 1992 |
| TseFI | GTSAC | 6 cut(s) | 932, 1091, 1361, 1877, 1952, 3413 |
| TseI | GCWGC | 5 cut(s) | 390, 1512, 2091, 3013, 3261 |
| Tsp45I | GTSAC | 6 cut(s) | 932, 1091, 1361, 1877, 1952, 3413 |
| TspGWI | ACGGA | 1 cut(s) | 2919 |
| TspRI | CASTG | 3 cut(s) | 436, 1311, 1992 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2117, 3157 |
| Vha464I | CTTAAG | 1 cut(s) | 2737 |
| VpaK11BI | GGWCC | 4 cut(s) | 782, 1969, 2160, 3443 |
| VspI | ATTAAT | 2 cut(s) | 1661, 2649 |
| XbaI | TCTAGA | 3 cut(s) | 1219, 2506, 2569 |
| XceI | RCATGY | 1 cut(s) | 1588 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 36, 283 |
| XhoI | CTCGAG | 1 cut(s) | 2069 |
| XmnI | GAANNNNTTC | 4 cut(s) | 161, 1170, 1476, 2854 |
| ZraI | GACGTC | 1 cut(s) | 73 |
| Zsp2I | ATGCAT | 1 cut(s) | 1446 |