TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 129 - 298 | 2.2e-54 | TIR domain |
| TIR_2 | PF13676 | 132 - 227 | 6.2e-15 | TIR domain |
| NB-ARC | PF00931 | 323 - 477 | 4.3e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 545 - 615 | 3.2e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 688 - 786 | 6.4e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 712 - 798 | 4.1e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 766 - 841 | 1.8e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 868 - 937 | 3e-09 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 879 - 934 | 7.7e-06 | Leucine rich repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 975 |
| AccB1I | GGYRCC | 1 cut(s) | 2799 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1816 |
| AccBSI | CCGCTC | 2 cut(s) | 119, 1031 |
| AccI | GTMKAC | 1 cut(s) | 1111 |
| AccII | CGCG | 3 cut(s) | 195, 285, 326 |
| AclWI | GGATC | 6 cut(s) | 94, 468, 485, 671, 1801, 2989 |
| AcoI | YGGCCR | 1 cut(s) | 2761 |
| AcsI | RAATTY | 7 cut(s) | 497, 814, 906, 918, 1055, 1593, 2780 |
| AcuI | CTGAAG | 5 cut(s) | 7, 810, 1385, 1905, 2795 |
| AcvI | CACGTG | 1 cut(s) | 136 |
| AcyI | GRCGYC | 1 cut(s) | 972 |
| AdeI | CACNNNGTG | 1 cut(s) | 139 |
| AfaI | GTAC | 7 cut(s) | 258, 690, 1512, 1558, 2026, 2283, 2902 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 66, 286, 1197, 1816 |
| AflII | CTTAAG | 1 cut(s) | 2177 |
| AflIII | ACRYGT | 1 cut(s) | 1897 |
| AjnI | CCWGG | 2 cut(s) | 1855, 2047 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 897, 929, 1275, 1307 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1731, 1763 |
| Alw21I | GWGCWC | 2 cut(s) | 324, 368 |
| Alw26I | GTCTC | 3 cut(s) | 32, 1083, 1496 |
| AlwI | GGATC | 6 cut(s) | 94, 468, 485, 671, 1801, 2989 |
| Ama87I | CYCGRG | 2 cut(s) | 185, 357 |
| AoxI | GGCC | 3 cut(s) | 2131, 2200, 2761 |
| ApeKI | GCWGC | 7 cut(s) | 161, 209, 536, 655, 934, 956, 1129 |
| ApoI | RAATTY | 7 cut(s) | 497, 814, 906, 918, 1055, 1593, 2780 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 237, 269, 2572, 2604 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1421, 1449, 2784 |
| AspLEI | GCGC | 5 cut(s) | 144, 161, 197, 285, 1866 |
| AspS9I | GGNCC | 2 cut(s) | 49, 2200 |
| AsuHPI | GGTGA | 2 cut(s) | 363, 2526 |
| AsuII | TTCGAA | 1 cut(s) | 2578 |
| AvaI | CYCGRG | 2 cut(s) | 185, 357 |
| AvaII | GGWCC | 1 cut(s) | 49 |
| BaeGI | GKGCMC | 2 cut(s) | 117, 2472 |
| BanI | GGYRCC | 1 cut(s) | 2799 |
| BanII | GRGCYC | 2 cut(s) | 324, 368 |
| BauI | CACGAG | 4 cut(s) | 110, 1050, 2105, 2835 |
| BbrPI | CACGTG | 1 cut(s) | 136 |
| BbsI | GAAGAC | 4 cut(s) | 1792, 1893, 2318, 2855 |
| Bbv12I | GWGCWC | 2 cut(s) | 324, 368 |
| BbvI | GCAGC | 7 cut(s) | 148, 196, 523, 642, 943, 946, 1141 |
| BccI | CCATC | 1 cut(s) | 1616 |
| BceAI | ACGGC | 1 cut(s) | 83 |
| BciT130I | CCWGG | 2 cut(s) | 1857, 2049 |
| BciVI | GTATCC | 1 cut(s) | 412 |
| BclI | TGATCA | 2 cut(s) | 1710, 2217 |
| BcoDI | GTCTC | 3 cut(s) | 32, 1083, 1496 |
| BfaI | CTAG | 9 cut(s) | 911, 1323, 1628, 1655, 2015, 2616, 2772, 2895, 2985 |
| BfmI | CTRYAG | 1 cut(s) | 957 |
| BfoI | RGCGCY | 1 cut(s) | 162 |
| BfrI | CTTAAG | 1 cut(s) | 2177 |
| BfuI | GTATCC | 1 cut(s) | 412 |
| BglII | AGATCT | 2 cut(s) | 1537, 1760 |
| BmcAI | AGTACT | 3 cut(s) | 1512, 2283, 2902 |
| Bme1390I | CCNGG | 2 cut(s) | 1857, 2049 |
| Bme18I | GGWCC | 1 cut(s) | 49 |
| BmeT110I | CYCGRG | 2 cut(s) | 185, 357 |
| BmgT120I | GGNCC | 2 cut(s) | 49, 2200 |
| BmiI | GGNNCC | 2 cut(s) | 1186, 2801 |
| BmrFI | CCNGG | 2 cut(s) | 1857, 2049 |
| BmrI | ACTGGG | 2 cut(s) | 1523, 2676 |
| BmsI | GCATC | 7 cut(s) | 596, 1785, 2218, 2262, 2684, 2766, 2900 |
| BmuI | ACTGGG | 2 cut(s) | 1523, 2676 |
| BpiI | GAAGAC | 4 cut(s) | 1792, 1893, 2318, 2855 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1031, 1063, 1033, 1065 |
| Bpu14I | TTCGAA | 1 cut(s) | 2578 |
| BpuEI | CTTGAG | 6 cut(s) | 254, 910, 2021, 2320, 2479, 2984 |
| BsaAI | YACGTR | 1 cut(s) | 136 |
| BsaHI | GRCGYC | 1 cut(s) | 972 |
| BsaI | GGTCTC | 1 cut(s) | 1496 |
| BsaJI | CCNNGG | 2 cut(s) | 377, 2047 |
| BsaWI | WCCGGW | 1 cut(s) | 46 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 261, 291, 2043, 2073 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 66, 286, 1197, 1816 |
| Bse118I | RCCGGY | 1 cut(s) | 155 |
| Bse1I | ACTGG | 4 cut(s) | 264, 1518, 2682, 2914 |
| BseBI | CCWGG | 2 cut(s) | 1857, 2049 |
| BseDI | CCNNGG | 2 cut(s) | 377, 2047 |
| BseGI | GGATG | 7 cut(s) | 493, 613, 973, 1800, 2277, 2525, 2699 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 66, 286, 1197, 1816 |
| BseMII | CTCAG | 3 cut(s) | 1960, 2582, 2742 |
| BseNI | ACTGG | 4 cut(s) | 264, 1518, 2682, 2914 |
| BseRI | GAGGAG | 1 cut(s) | 366 |
| BseSI | GKGCMC | 2 cut(s) | 117, 2472 |
| BseXI | GCAGC | 7 cut(s) | 148, 196, 523, 642, 943, 946, 1141 |
| Bsh1236I | CGCG | 3 cut(s) | 195, 285, 326 |
| BshFI | GGCC | 3 cut(s) | 2133, 2202, 2763 |
| BshNI | GGYRCC | 1 cut(s) | 2799 |
| BsiHKAI | GWGCWC | 2 cut(s) | 324, 368 |
| BsiHKCI | CYCGRG | 2 cut(s) | 185, 357 |
| BsiSI | CCGG | 5 cut(s) | 47, 156, 280, 524, 2597 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 66, 286, 1197, 1816 |
| BsmAI | GTCTC | 3 cut(s) | 32, 1083, 1496 |
| BsmI | GAATGC | 3 cut(s) | 635, 1421, 2632 |
| BsnI | GGCC | 3 cut(s) | 2133, 2202, 2763 |
| Bso31I | GGTCTC | 1 cut(s) | 1496 |
| BsoBI | CYCGRG | 2 cut(s) | 185, 357 |
| Bsp119I | TTCGAA | 1 cut(s) | 2578 |
| Bsp1286I | GDGCHC | 4 cut(s) | 117, 324, 368, 2472 |
| Bsp1407I | TGTACA | 1 cut(s) | 2024 |
| Bsp68I | TCGCGA | 1 cut(s) | 326 |
| BspANI | GGCC | 3 cut(s) | 2133, 2202, 2763 |
| BspCNI | CTCAG | 3 cut(s) | 1959, 2581, 2743 |
| BspFNI | CGCG | 3 cut(s) | 195, 285, 326 |
| BspHI | TCATGA | 1 cut(s) | 730 |
| BspLI | GGNNCC | 2 cut(s) | 1186, 2801 |
| BspMAI | CTGCAG | 1 cut(s) | 961 |
| BspPI | GGATC | 6 cut(s) | 94, 468, 485, 671, 1801, 2989 |
| BspQI | GCTCTTC | 1 cut(s) | 373 |
| BspT104I | TTCGAA | 1 cut(s) | 2578 |
| BspT107I | GGYRCC | 1 cut(s) | 2799 |
| BspTI | CTTAAG | 1 cut(s) | 2177 |
| BspTNI | GGTCTC | 1 cut(s) | 1496 |
| BsrBI | CCGCTC | 2 cut(s) | 119, 1031 |
| BsrFI | RCCGGY | 1 cut(s) | 155 |
| BsrGI | TGTACA | 1 cut(s) | 2024 |
| BsrI | ACTGG | 4 cut(s) | 264, 1518, 2682, 2914 |
| BssAI | RCCGGY | 1 cut(s) | 155 |
| BssECI | CCNNGG | 2 cut(s) | 377, 2047 |
| BssNI | GRCGYC | 1 cut(s) | 972 |
| BssSI | CACGAG | 4 cut(s) | 110, 1050, 2105, 2835 |
| Bst2BI | CACGAG | 4 cut(s) | 110, 1050, 2105, 2835 |
| Bst2UI | CCWGG | 2 cut(s) | 1857, 2049 |
| Bst4CI | ACNGT | 5 cut(s) | 220, 250, 314, 652, 1774 |
| Bst6I | CTCTTC | 8 cut(s) | 26, 373, 1278, 1404, 1528, 1632, 1637, 2919 |
| BstACI | GRCGYC | 1 cut(s) | 972 |
| BstAFI | CTTAAG | 1 cut(s) | 2177 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 533, 2912 |
| BstAUI | TGTACA | 1 cut(s) | 2024 |
| BstBAI | YACGTR | 1 cut(s) | 136 |
| BstBI | TTCGAA | 1 cut(s) | 2578 |
| BstC8I | GCNNGC | 8 cut(s) | 117, 121, 157, 324, 328, 1862, 2119, 2807 |
| BstDEI | CTNAG | 5 cut(s) | 1541, 1946, 2568, 2654, 2751 |
| BstEII | GGTNACC | 1 cut(s) | 1433 |
| BstF5I | GGATG | 7 cut(s) | 493, 613, 973, 1800, 2277, 2525, 2699 |
| BstFNI | CGCG | 3 cut(s) | 195, 285, 326 |
| BstH2I | RGCGCY | 1 cut(s) | 162 |
| BstHHI | GCGC | 5 cut(s) | 144, 161, 197, 285, 1866 |
| BstMAI | GTCTC | 3 cut(s) | 32, 1083, 1496 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 129, 161, 332, 533, 1674, 2912 |
| BstNI | CCWGG | 2 cut(s) | 1857, 2049 |
| BstNSI | RCATGY | 1 cut(s) | 1901 |
| BstPI | GGTNACC | 1 cut(s) | 1433 |
| BstSCI | CCNGG | 2 cut(s) | 1855, 2047 |
| BstSFI | CTRYAG | 1 cut(s) | 957 |
| BstSLI | GKGCMC | 2 cut(s) | 117, 2472 |
| BstUI | CGCG | 3 cut(s) | 195, 285, 326 |
| BstV1I | GCAGC | 7 cut(s) | 148, 196, 523, 642, 943, 946, 1141 |
| BstV2I | GAAGAC | 4 cut(s) | 1792, 1893, 2318, 2855 |
| BstX2I | RGATCY | 4 cut(s) | 99, 1537, 1760, 2981 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2999 |
| BstYI | RGATCY | 4 cut(s) | 99, 1537, 1760, 2981 |
| BsuI | GTATCC | 1 cut(s) | 412 |
| BsuRI | GGCC | 3 cut(s) | 2133, 2202, 2763 |
| BtgZI | GCGATG | 1 cut(s) | 1734 |
| BtsCI | GGATG | 7 cut(s) | 493, 613, 973, 1800, 2277, 2525, 2699 |
| BtsI | GCAGTG | 4 cut(s) | 179, 450, 2341, 2869 |
| BtsIMutI | CAGTG | 7 cut(s) | 179, 319, 450, 657, 2341, 2689, 2869 |
| BtuMI | TCGCGA | 1 cut(s) | 326 |
| Cac8I | GCNNGC | 8 cut(s) | 117, 121, 157, 324, 328, 1862, 2119, 2807 |
| CciI | TCATGA | 1 cut(s) | 730 |
| CfoI | GCGC | 5 cut(s) | 144, 161, 197, 285, 1866 |
| Cfr10I | RCCGGY | 1 cut(s) | 155 |
| Cfr13I | GGNCC | 2 cut(s) | 49, 2200 |
| Csp6I | GTAC | 7 cut(s) | 257, 689, 1511, 1557, 2025, 2282, 2901 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 927, 962, 2110, 2145 |
| CviAII | CATG | 9 cut(s) | 634, 731, 1349, 1665, 1781, 1898, 2197, 2544, 2841 |
| CviQI | GTAC | 7 cut(s) | 257, 689, 1511, 1557, 2025, 2282, 2901 |
| DdeI | CTNAG | 5 cut(s) | 1541, 1946, 2568, 2654, 2751 |
| DraI | TTTAAA | 2 cut(s) | 1984, 2956 |
| DraIII | CACNNNGTG | 1 cut(s) | 139 |
| EaeI | YGGCCR | 1 cut(s) | 2761 |
| Eam1104I | CTCTTC | 8 cut(s) | 26, 373, 1278, 1404, 1528, 1632, 1637, 2919 |
| EarI | CTCTTC | 8 cut(s) | 26, 373, 1278, 1404, 1528, 1632, 1637, 2919 |
| EciI | GGCGGA | 1 cut(s) | 46 |
| Ecl136II | GAGCTC | 2 cut(s) | 322, 366 |
| Eco24I | GRGCYC | 2 cut(s) | 324, 368 |
| Eco31I | GGTCTC | 1 cut(s) | 1496 |
| Eco47I | GGWCC | 1 cut(s) | 49 |
| Eco53kI | GAGCTC | 2 cut(s) | 322, 366 |
| Eco57I | CTGAAG | 5 cut(s) | 7, 810, 1385, 1905, 2795 |
| Eco72I | CACGTG | 1 cut(s) | 136 |
| Eco88I | CYCGRG | 2 cut(s) | 185, 357 |
| Eco91I | GGTNACC | 1 cut(s) | 1433 |
| EcoICRI | GAGCTC | 2 cut(s) | 322, 366 |
| EcoO65I | GGTNACC | 1 cut(s) | 1433 |
| EcoRI | GAATTC | 1 cut(s) | 814 |
| EcoRII | CCWGG | 2 cut(s) | 1855, 2047 |
| EcoT22I | ATGCAT | 2 cut(s) | 589, 635 |
| EcoT38I | GRGCYC | 2 cut(s) | 324, 368 |
| FaeI | CATG | 9 cut(s) | 637, 734, 1352, 1668, 1784, 1901, 2200, 2547, 2844 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1437, 1469, 2224, 2256 |
| FatI | CATG | 9 cut(s) | 633, 730, 1348, 1664, 1780, 1897, 2196, 2543, 2840 |
| FauI | CCCGC | 2 cut(s) | 124, 995 |
| FbaI | TGATCA | 2 cut(s) | 1710, 2217 |
| FblI | GTMKAC | 1 cut(s) | 1111 |
| FokI | GGATG | 7 cut(s) | 500, 620, 980, 1807, 2284, 2532, 2706 |
| FriOI | GRGCYC | 2 cut(s) | 324, 368 |
| FspBI | CTAG | 9 cut(s) | 911, 1323, 1628, 1655, 2015, 2616, 2772, 2895, 2985 |
| GlaI | GCGC | 5 cut(s) | 143, 160, 196, 284, 1865 |
| HaeII | RGCGCY | 1 cut(s) | 162 |
| HaeIII | GGCC | 3 cut(s) | 2133, 2202, 2763 |
| HapII | CCGG | 5 cut(s) | 47, 156, 280, 524, 2597 |
| HhaI | GCGC | 5 cut(s) | 144, 161, 197, 285, 1866 |
| Hin1I | GRCGYC | 1 cut(s) | 972 |
| Hin1II | CATG | 9 cut(s) | 637, 734, 1352, 1668, 1784, 1901, 2200, 2547, 2844 |
| Hin6I | GCGC | 5 cut(s) | 142, 159, 195, 283, 1864 |
| HinP1I | GCGC | 5 cut(s) | 142, 159, 195, 283, 1864 |
| HincII | GTYRAC | 4 cut(s) | 298, 594, 1969, 2044 |
| HindII | GTYRAC | 4 cut(s) | 298, 594, 1969, 2044 |
| HindIII | AAGCTT | 5 cut(s) | 2174, 2387, 2435, 2807, 2825 |
| HpaII | CCGG | 5 cut(s) | 47, 156, 280, 524, 2597 |
| HphI | GGTGA | 2 cut(s) | 363, 2526 |
| Hpy166II | GTNNAC | 7 cut(s) | 6, 298, 594, 1112, 1246, 1969, 2044 |
| Hpy188I | TCNGA | 7 cut(s) | 38, 99, 127, 685, 1171, 2674, 2814 |
| Hpy8I | GTNNAC | 7 cut(s) | 6, 298, 594, 1112, 1246, 1969, 2044 |
| Hpy99I | CGWCG | 3 cut(s) | 254, 257, 1839 |
| HpyAV | CCTTC | 9 cut(s) | 337, 762, 1082, 1175, 1184, 1363, 2012, 2482, 2574 |
| HpyCH4III | ACNGT | 5 cut(s) | 220, 250, 314, 652, 1774 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 596, 672, 972 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 129, 161, 332, 533, 1674, 2912 |
| HpyF3I | CTNAG | 5 cut(s) | 1541, 1946, 2568, 2654, 2751 |
| HpySE526I | ACGT | 4 cut(s) | 135, 596, 672, 972 |
| Hsp92I | GRCGYC | 1 cut(s) | 972 |
| Hsp92II | CATG | 9 cut(s) | 637, 734, 1352, 1668, 1784, 1901, 2200, 2547, 2844 |
| HspAI | GCGC | 5 cut(s) | 142, 159, 195, 283, 1864 |
| KroI | GCCGGC | 1 cut(s) | 155 |
| KroNI | GCCGGC | 1 cut(s) | 157 |
| Ksp22I | TGATCA | 2 cut(s) | 1710, 2217 |
| LguI | GCTCTTC | 1 cut(s) | 373 |
| LmnI | GCTCC | 3 cut(s) | 319, 1184, 2844 |
| Lsp1109I | GCAGC | 7 cut(s) | 148, 196, 523, 642, 943, 946, 1141 |
| LweI | GCATC | 7 cut(s) | 596, 1785, 2218, 2262, 2684, 2766, 2900 |
| MaeI | CTAG | 9 cut(s) | 911, 1323, 1628, 1655, 2015, 2616, 2772, 2895, 2985 |
| MaeII | ACGT | 4 cut(s) | 135, 596, 672, 972 |
| MaeIII | GTNAC | 8 cut(s) | 472, 1433, 1583, 1696, 2532, 2588, 2657, 2987 |
| MbiI | CCGCTC | 2 cut(s) | 119, 1031 |
| MfeI | CAATTG | 1 cut(s) | 540 |
| MflI | RGATCY | 4 cut(s) | 99, 1537, 1760, 2981 |
| MhlI | GDGCHC | 4 cut(s) | 117, 324, 368, 2472 |
| MlyI | GAGTC | 2 cut(s) | 480, 1085 |
| MmeI | TCCRAC | 3 cut(s) | 111, 895, 2855 |
| Mph1103I | ATGCAT | 2 cut(s) | 589, 635 |
| MroNI | GCCGGC | 1 cut(s) | 155 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1421, 1449, 2784 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2874 |
| MspA1I | CMGCKG | 1 cut(s) | 12 |
| MspCI | CTTAAG | 1 cut(s) | 2177 |
| MspI | CCGG | 5 cut(s) | 47, 156, 280, 524, 2597 |
| MspR9I | CCNGG | 2 cut(s) | 1857, 2049 |
| MunI | CAATTG | 1 cut(s) | 540 |
| Mva1269I | GAATGC | 3 cut(s) | 635, 1421, 2632 |
| MvaI | CCWGG | 2 cut(s) | 1857, 2049 |
| MvnI | CGCG | 3 cut(s) | 195, 285, 326 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 129, 161, 332, 533, 1674, 2912 |
| NaeI | GCCGGC | 1 cut(s) | 157 |
| NgoMIV | GCCGGC | 1 cut(s) | 155 |
| NlaIII | CATG | 9 cut(s) | 637, 734, 1352, 1668, 1784, 1901, 2200, 2547, 2844 |
| NlaIV | GGNNCC | 2 cut(s) | 1186, 2801 |
| NmuCI | GTSAC | 5 cut(s) | 472, 2532, 2588, 2657, 2987 |
| NruI | TCGCGA | 1 cut(s) | 326 |
| NsiI | ATGCAT | 2 cut(s) | 589, 635 |
| NspI | RCATGY | 1 cut(s) | 1901 |
| NspV | TTCGAA | 1 cut(s) | 2578 |
| PaeR7I | CTCGAG | 1 cut(s) | 357 |
| PagI | TCATGA | 1 cut(s) | 730 |
| PciI | ACATGT | 1 cut(s) | 1897 |
| PciSI | GCTCTTC | 1 cut(s) | 373 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 249, 306 |
| PctI | GAATGC | 3 cut(s) | 635, 1421, 2632 |
| PdiI | GCCGGC | 1 cut(s) | 157 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1421, 1449, 2784 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1816 |
| PleI | GAGTC | 2 cut(s) | 479, 1085 |
| PmaCI | CACGTG | 1 cut(s) | 136 |
| PmlI | CACGTG | 1 cut(s) | 136 |
| PpsI | GAGTC | 2 cut(s) | 479, 1085 |
| Ppu21I | YACGTR | 1 cut(s) | 136 |
| PscI | ACATGT | 1 cut(s) | 1897 |
| Psp124BI | GAGCTC | 2 cut(s) | 324, 368 |
| Psp6I | CCWGG | 2 cut(s) | 1855, 2047 |
| PspCI | CACGTG | 1 cut(s) | 136 |
| PspEI | GGTNACC | 1 cut(s) | 1433 |
| PspGI | CCWGG | 2 cut(s) | 1855, 2047 |
| PspN4I | GGNNCC | 2 cut(s) | 1186, 2801 |
| PspPI | GGNCC | 2 cut(s) | 49, 2200 |
| PstI | CTGCAG | 1 cut(s) | 961 |
| PsuI | RGATCY | 4 cut(s) | 99, 1537, 1760, 2981 |
| RruI | TCGCGA | 1 cut(s) | 326 |
| RsaI | GTAC | 7 cut(s) | 258, 690, 1512, 1558, 2026, 2283, 2902 |
| RsaNI | GTAC | 7 cut(s) | 257, 689, 1511, 1557, 2025, 2282, 2901 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2874 |
| SacI | GAGCTC | 2 cut(s) | 324, 368 |
| SapI | GCTCTTC | 1 cut(s) | 373 |
| Sau96I | GGNCC | 2 cut(s) | 49, 2200 |
| ScaI | AGTACT | 3 cut(s) | 1512, 2283, 2902 |
| SchI | GAGTC | 2 cut(s) | 480, 1085 |
| ScrFI | CCNGG | 2 cut(s) | 1857, 2049 |
| SduI | GDGCHC | 4 cut(s) | 117, 324, 368, 2472 |
| SfaNI | GCATC | 7 cut(s) | 596, 1785, 2218, 2262, 2684, 2766, 2900 |
| SfcI | CTRYAG | 1 cut(s) | 957 |
| Sfr274I | CTCGAG | 1 cut(s) | 357 |
| SfuI | TTCGAA | 1 cut(s) | 2578 |
| SinI | GGWCC | 1 cut(s) | 49 |
| SlaI | CTCGAG | 1 cut(s) | 357 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2874 |
| SmlI | CTYRAG | 8 cut(s) | 233, 357, 925, 2000, 2177, 2299, 2458, 2963 |
| SmoI | CTYRAG | 8 cut(s) | 233, 357, 925, 2000, 2177, 2299, 2458, 2963 |
| SspI | AATATT | 4 cut(s) | 83, 663, 1268, 1650 |
| SspMI | CTAG | 9 cut(s) | 911, 1323, 1628, 1655, 2015, 2616, 2772, 2895, 2985 |
| SstI | GAGCTC | 2 cut(s) | 324, 368 |
| StyD4I | CCNGG | 2 cut(s) | 1855, 2047 |
| TaaI | ACNGT | 5 cut(s) | 220, 250, 314, 652, 1774 |
| TaiI | ACGT | 4 cut(s) | 138, 599, 675, 975 |
| TaqI | TCGA | 7 cut(s) | 201, 243, 358, 424, 1344, 1693, 2578 |
| TatI | WGTACW | 5 cut(s) | 1510, 1556, 2024, 2281, 2900 |
| TauI | GCSGC | 3 cut(s) | 15, 1190, 2805 |
| TscAI | CASTG | 7 cut(s) | 186, 319, 457, 657, 2341, 2689, 2876 |
| TseFI | GTSAC | 5 cut(s) | 472, 2532, 2588, 2657, 2987 |
| TseI | GCWGC | 7 cut(s) | 161, 209, 536, 655, 934, 956, 1129 |
| Tsp45I | GTSAC | 5 cut(s) | 472, 2532, 2588, 2657, 2987 |
| TspGWI | ACGGA | 5 cut(s) | 32, 280, 315, 1084, 1823 |
| TspRI | CASTG | 7 cut(s) | 186, 319, 457, 657, 2341, 2689, 2876 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1816 |
| Vha464I | CTTAAG | 1 cut(s) | 2177 |
| VpaK11BI | GGWCC | 1 cut(s) | 49 |
| XapI | RAATTY | 7 cut(s) | 497, 814, 906, 918, 1055, 1593, 2780 |
| XbaI | TCTAGA | 3 cut(s) | 1627, 2014, 2771 |
| XceI | RCATGY | 1 cut(s) | 1901 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2838 |
| XhoI | CTCGAG | 1 cut(s) | 357 |
| XmiI | GTMKAC | 1 cut(s) | 1111 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1421, 1449, 2784 |
| XspI | CTAG | 9 cut(s) | 911, 1323, 1628, 1655, 2015, 2616, 2772, 2895, 2985 |
| ZraI | GACGTC | 1 cut(s) | 973 |
| ZrmI | AGTACT | 3 cut(s) | 1512, 2283, 2902 |
| Zsp2I | ATGCAT | 2 cut(s) | 589, 635 |