TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 189 | 4.4e-56 | TIR domain |
| TIR_2 | PF13676 | 21 - 118 | 7e-17 | TIR domain |
| NB-ARC | PF00931 | 202 - 371 | 3e-24 | NB-ARC domain |
| NACHT | PF05729 | 222 - 364 | 4.8e-07 | NACHT domain |
| WHD_ROQ1 | PF23282 | 439 - 508 | 5.7e-12 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 645 - 755 | 2.7e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 699 - 887 | 7.5e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 793 - 865 | 7e-08 | Leucine-rich repeat region |
| C-JID | PF20160 | 930 - 1073 | 2.2e-14 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2273 |
| AatII | GACGTC | 1 cut(s) | 2610 |
| Acc36I | ACCTGC | 1 cut(s) | 977 |
| AccB1I | GGYRCC | 1 cut(s) | 3296 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 124 |
| AccBSI | CCGCTC | 1 cut(s) | 130 |
| AccI | GTMKAC | 2 cut(s) | 1392, 2071 |
| AccIII | TCCGGA | 2 cut(s) | 190, 3081 |
| AciI | CCGC | 7 cut(s) | 130, 902, 1354, 2657, 2764, 3193, 3333 |
| AclWI | GGATC | 7 cut(s) | 152, 338, 351, 936, 2486, 2648, 2951 |
| AcoI | YGGCCR | 1 cut(s) | 462 |
| AcsI | RAATTY | 9 cut(s) | 810, 1191, 1329, 1736, 2034, 2041, 2147, 2442, 2802 |
| AcuI | CTGAAG | 6 cut(s) | 402, 468, 1067, 1143, 1310, 2042 |
| AcvI | CACGTG | 1 cut(s) | 3111 |
| AcyI | GRCGYC | 1 cut(s) | 2607 |
| AdeI | CACNNNGTG | 2 cut(s) | 267, 1034 |
| AfaI | GTAC | 8 cut(s) | 500, 1020, 1211, 1364, 1984, 2632, 2913, 3203 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 124, 2475, 2688, 2716 |
| AflII | CTTAAG | 1 cut(s) | 2300 |
| AflIII | ACRYGT | 2 cut(s) | 60, 3108 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2926 |
| AhlI | ACTAGT | 3 cut(s) | 706, 1021, 1387 |
| AjiI | CACGTC | 1 cut(s) | 61 |
| AjnI | CCWGG | 2 cut(s) | 1537, 2791 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 238, 270, 393, 425 |
| AleI | CACNNNNGTG | 1 cut(s) | 2232 |
| Alw21I | GWGCWC | 5 cut(s) | 14, 198, 2229, 2905, 3210 |
| Alw26I | GTCTC | 5 cut(s) | 352, 473, 563, 2020, 2975 |
| AlwI | GGATC | 7 cut(s) | 152, 338, 351, 936, 2486, 2648, 2951 |
| Ama87I | CYCGRG | 1 cut(s) | 3144 |
| Aor13HI | TCCGGA | 2 cut(s) | 190, 3081 |
| AoxI | GGCC | 2 cut(s) | 462, 1729 |
| ApeKI | GCWGC | 7 cut(s) | 372, 1696, 2121, 3252, 3255, 3323, 3368 |
| ApoI | RAATTY | 9 cut(s) | 810, 1191, 1329, 1736, 2034, 2041, 2147, 2442, 2802 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2019, 2051 |
| AseI | ATTAAT | 1 cut(s) | 2553 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 387, 598, 840, 1080, 2387 |
| AspS9I | GGNCC | 1 cut(s) | 1730 |
| AsuC2I | CCSGG | 1 cut(s) | 1472 |
| AsuHPI | GGTGA | 5 cut(s) | 92, 2345, 2846, 3041, 3187 |
| AvaI | CYCGRG | 1 cut(s) | 3144 |
| BaeGI | GKGCMC | 1 cut(s) | 3199 |
| BalI | TGGCCA | 1 cut(s) | 464 |
| BamHI | GGATCC | 1 cut(s) | 343 |
| BanI | GGYRCC | 1 cut(s) | 3296 |
| BanII | GRGCYC | 1 cut(s) | 198 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1685, 1717 |
| BauI | CACGAG | 1 cut(s) | 119 |
| BbrPI | CACGTG | 1 cut(s) | 3111 |
| BbsI | GAAGAC | 3 cut(s) | 90, 1166, 1553 |
| Bbv12I | GWGCWC | 5 cut(s) | 14, 198, 2229, 2905, 3210 |
| BbvI | GCAGC | 6 cut(s) | 384, 1683, 2108, 3264, 3267, 3335 |
| BccI | CCATC | 6 cut(s) | 191, 471, 667, 1298, 1904, 2014 |
| BceAI | ACGGC | 2 cut(s) | 31, 2879 |
| BciT130I | CCWGG | 2 cut(s) | 1539, 2793 |
| BciVI | GTATCC | 1 cut(s) | 1788 |
| BclI | TGATCA | 2 cut(s) | 1852, 3225 |
| BcnI | CCSGG | 1 cut(s) | 1472 |
| BcoDI | GTCTC | 5 cut(s) | 352, 473, 563, 2020, 2975 |
| BcuI | ACTAGT | 3 cut(s) | 706, 1021, 1387 |
| BfmI | CTRYAG | 2 cut(s) | 3150, 3366 |
| BfrI | CTTAAG | 1 cut(s) | 2300 |
| BfuAI | ACCTGC | 1 cut(s) | 977 |
| BfuI | GTATCC | 1 cut(s) | 1788 |
| BisI | GCNGC | 8 cut(s) | 131, 373, 1697, 2122, 3253, 3256, 3324, 3369 |
| BlsI | GCNGC | 8 cut(s) | 132, 374, 1698, 2123, 3254, 3257, 3325, 3370 |
| Bme1390I | CCNGG | 3 cut(s) | 1472, 1539, 2793 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2926 |
| BmeT110I | CYCGRG | 1 cut(s) | 3144 |
| BmgBI | CACGTC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 1 cut(s) | 1730 |
| BmiI | GGNNCC | 4 cut(s) | 345, 574, 2990, 3298 |
| BmrFI | CCNGG | 3 cut(s) | 1472, 1539, 2793 |
| BmsI | GCATC | 9 cut(s) | 436, 559, 753, 1216, 2327, 2722, 2854, 3155, 3267 |
| BpiI | GAAGAC | 3 cut(s) | 90, 1166, 1553 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1915, 1947 |
| BpmI | CTGGAG | 4 cut(s) | 629, 1188, 1917, 3122 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1180 |
| BpuEI | CTTGAG | 5 cut(s) | 1774, 1942, 1979, 2251, 2901 |
| BpuMI | CCSGG | 1 cut(s) | 1472 |
| Bsa29I | ATCGAT | 1 cut(s) | 1899 |
| BsaAI | YACGTR | 1 cut(s) | 3111 |
| BsaBI | GATNNNNATC | 1 cut(s) | 927 |
| BsaHI | GRCGYC | 1 cut(s) | 2607 |
| BsaJI | CCNNGG | 3 cut(s) | 47, 76, 3300 |
| BsaWI | WCCGGW | 3 cut(s) | 190, 1810, 3081 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3095, 3125 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 124, 2475, 2688, 2716 |
| Bse1I | ACTGG | 1 cut(s) | 465 |
| Bse3DI | GCAATG | 5 cut(s) | 1341, 1573, 2010, 2015, 3121 |
| Bse8I | GATNNNNATC | 1 cut(s) | 927 |
| BseAI | TCCGGA | 2 cut(s) | 190, 3081 |
| BseBI | CCWGG | 2 cut(s) | 1539, 2793 |
| BseCI | ATCGAT | 1 cut(s) | 1899 |
| BseDI | CCNNGG | 3 cut(s) | 47, 76, 3300 |
| BseGI | GGATG | 9 cut(s) | 482, 550, 678, 1511, 1819, 2002, 2006, 2869, 3289 |
| BseJI | GATNNNNATC | 1 cut(s) | 927 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 124, 2475, 2688, 2716 |
| BseMI | GCAATG | 5 cut(s) | 1341, 1573, 2010, 2015, 3121 |
| BseMII | CTCAG | 8 cut(s) | 591, 1428, 1754, 1843, 2503, 2702, 2838, 3081 |
| BseNI | ACTGG | 1 cut(s) | 465 |
| BseRI | GAGGAG | 7 cut(s) | 188, 320, 440, 626, 997, 2938, 3287 |
| BseSI | GKGCMC | 1 cut(s) | 3199 |
| BseXI | GCAGC | 6 cut(s) | 384, 1683, 2108, 3264, 3267, 3335 |
| BsgI | GTGCAG | 1 cut(s) | 2689 |
| BshFI | GGCC | 2 cut(s) | 464, 1731 |
| BshNI | GGYRCC | 1 cut(s) | 3296 |
| BshVI | ATCGAT | 1 cut(s) | 1899 |
| BsiHKAI | GWGCWC | 5 cut(s) | 14, 198, 2229, 2905, 3210 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3144 |
| BsiSI | CCGG | 4 cut(s) | 191, 1471, 1811, 3082 |
| BslFI | GGGAC | 4 cut(s) | 167, 328, 1074, 2206 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 124, 2475, 2688, 2716 |
| BsmAI | GTCTC | 5 cut(s) | 352, 473, 563, 2020, 2975 |
| BsmFI | GGGAC | 4 cut(s) | 167, 328, 1074, 2206 |
| BsmI | GAATGC | 2 cut(s) | 302, 2523 |
| BsnI | GGCC | 2 cut(s) | 464, 1731 |
| BsoBI | CYCGRG | 1 cut(s) | 3144 |
| Bsp1286I | GDGCHC | 6 cut(s) | 14, 198, 2229, 2905, 3199, 3210 |
| Bsp13I | TCCGGA | 2 cut(s) | 190, 3081 |
| Bsp1407I | TGTACA | 1 cut(s) | 1209 |
| Bsp19I | CCATGG | 1 cut(s) | 3300 |
| BspACI | CCGC | 7 cut(s) | 130, 902, 1354, 2657, 2764, 3193, 3333 |
| BspANI | GGCC | 2 cut(s) | 464, 1731 |
| BspCNI | CTCAG | 8 cut(s) | 590, 1429, 1755, 1842, 2502, 2703, 2839, 3082 |
| BspDI | ATCGAT | 1 cut(s) | 1899 |
| BspEI | TCCGGA | 2 cut(s) | 190, 3081 |
| BspHI | TCATGA | 1 cut(s) | 2938 |
| BspLI | GGNNCC | 4 cut(s) | 345, 574, 2990, 3298 |
| BspMAI | CTGCAG | 1 cut(s) | 3370 |
| BspMI | ACCTGC | 1 cut(s) | 977 |
| BspPI | GGATC | 7 cut(s) | 152, 338, 351, 936, 2486, 2648, 2951 |
| BspQI | GCTCTTC | 3 cut(s) | 1086, 1527, 3213 |
| BspT107I | GGYRCC | 1 cut(s) | 3296 |
| BspTI | CTTAAG | 1 cut(s) | 2300 |
| BsrBI | CCGCTC | 1 cut(s) | 130 |
| BsrDI | GCAATG | 5 cut(s) | 1341, 1573, 2010, 2015, 3121 |
| BsrGI | TGTACA | 1 cut(s) | 1209 |
| BsrI | ACTGG | 1 cut(s) | 465 |
| BssECI | CCNNGG | 3 cut(s) | 47, 76, 3300 |
| BssNAI | GTATAC | 1 cut(s) | 1393 |
| BssNI | GRCGYC | 1 cut(s) | 2607 |
| BssSI | CACGAG | 1 cut(s) | 119 |
| BssT1I | CCWWGG | 1 cut(s) | 3300 |
| Bst1107I | GTATAC | 1 cut(s) | 1393 |
| Bst2BI | CACGAG | 1 cut(s) | 119 |
| Bst2UI | CCWGG | 2 cut(s) | 1539, 2793 |
| Bst6I | CTCTTC | 7 cut(s) | 396, 1086, 1527, 1641, 2018, 2398, 3213 |
| BstACI | GRCGYC | 1 cut(s) | 2607 |
| BstAFI | CTTAAG | 1 cut(s) | 2300 |
| BstAUI | TGTACA | 1 cut(s) | 1209 |
| BstBAI | YACGTR | 1 cut(s) | 3111 |
| BstC8I | GCNNGC | 4 cut(s) | 272, 1358, 2521, 3195 |
| BstDSI | CCRYGG | 2 cut(s) | 47, 3300 |
| BstF5I | GGATG | 9 cut(s) | 482, 550, 678, 1511, 1819, 2002, 2006, 2869, 3289 |
| BstMAI | GTCTC | 5 cut(s) | 352, 473, 563, 2020, 2975 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 470, 2539, 2706, 2900 |
| BstNI | CCWGG | 2 cut(s) | 1539, 2793 |
| BstNSI | RCATGY | 3 cut(s) | 1019, 1350, 2871 |
| BstSCI | CCNGG | 3 cut(s) | 1470, 1537, 2791 |
| BstSFI | CTRYAG | 2 cut(s) | 3150, 3366 |
| BstSLI | GKGCMC | 1 cut(s) | 3199 |
| BstV1I | GCAGC | 6 cut(s) | 384, 1683, 2108, 3264, 3267, 3335 |
| BstV2I | GAAGAC | 3 cut(s) | 90, 1166, 1553 |
| BstX2I | RGATCY | 4 cut(s) | 343, 2478, 2653, 2956 |
| BstYI | RGATCY | 4 cut(s) | 343, 2478, 2653, 2956 |
| BstZ17I | GTATAC | 1 cut(s) | 1393 |
| Bsu15I | ATCGAT | 1 cut(s) | 1899 |
| BsuI | GTATCC | 1 cut(s) | 1788 |
| BsuRI | GGCC | 2 cut(s) | 464, 1731 |
| BsuTUI | ATCGAT | 1 cut(s) | 1899 |
| BtgI | CCRYGG | 2 cut(s) | 47, 3300 |
| BtrI | CACGTC | 1 cut(s) | 61 |
| BtsCI | GGATG | 9 cut(s) | 482, 550, 678, 1511, 1819, 2002, 2006, 2869, 3289 |
| BtsIMutI | CAGTG | 2 cut(s) | 2760, 3197 |
| BveI | ACCTGC | 1 cut(s) | 977 |
| Cac8I | GCNNGC | 4 cut(s) | 272, 1358, 2521, 3195 |
| CciI | TCATGA | 1 cut(s) | 2938 |
| Cfr13I | GGNCC | 1 cut(s) | 1730 |
| ClaI | ATCGAT | 1 cut(s) | 1899 |
| CseI | GACGC | 2 cut(s) | 1554, 2689 |
| Csp6I | GTAC | 8 cut(s) | 499, 1019, 1210, 1363, 1983, 2631, 2912, 3202 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 518, 553 |
| CviQI | GTAC | 8 cut(s) | 499, 1019, 1210, 1363, 1983, 2631, 2912, 3202 |
| DraIII | CACNNNGTG | 2 cut(s) | 267, 1034 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2926 |
| EaeI | YGGCCR | 1 cut(s) | 462 |
| Eam1104I | CTCTTC | 7 cut(s) | 396, 1086, 1527, 1641, 2018, 2398, 3213 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2926 |
| EarI | CTCTTC | 7 cut(s) | 396, 1086, 1527, 1641, 2018, 2398, 3213 |
| EciI | GGCGGA | 1 cut(s) | 2646 |
| Ecl136II | GAGCTC | 1 cut(s) | 196 |
| Eco130I | CCWWGG | 1 cut(s) | 3300 |
| Eco24I | GRGCYC | 1 cut(s) | 198 |
| Eco53kI | GAGCTC | 1 cut(s) | 196 |
| Eco57I | CTGAAG | 6 cut(s) | 402, 468, 1067, 1143, 1310, 2042 |
| Eco72I | CACGTG | 1 cut(s) | 3111 |
| Eco88I | CYCGRG | 1 cut(s) | 3144 |
| EcoICRI | GAGCTC | 1 cut(s) | 196 |
| EcoRII | CCWGG | 2 cut(s) | 1537, 2791 |
| EcoT14I | CCWWGG | 1 cut(s) | 3300 |
| EcoT22I | ATGCAT | 4 cut(s) | 302, 1231, 2869, 3170 |
| EcoT38I | GRGCYC | 1 cut(s) | 198 |
| ErhI | CCWWGG | 1 cut(s) | 3300 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 891, 923, 3116, 3148 |
| FaqI | GGGAC | 4 cut(s) | 167, 328, 1074, 2206 |
| FauI | CCCGC | 1 cut(s) | 3186 |
| FauNDI | CATATG | 1 cut(s) | 1048 |
| FbaI | TGATCA | 2 cut(s) | 1852, 3225 |
| FblI | GTMKAC | 2 cut(s) | 1392, 2071 |
| Fnu4HI | GCNGC | 8 cut(s) | 131, 373, 1697, 2122, 3253, 3256, 3324, 3369 |
| FokI | GGATG | 9 cut(s) | 489, 537, 685, 1518, 1826, 1989, 1993, 2876, 3296 |
| FriOI | GRGCYC | 1 cut(s) | 198 |
| Fsp4HI | GCNGC | 8 cut(s) | 131, 373, 1697, 2122, 3253, 3256, 3324, 3369 |
| GluI | GCNGC | 8 cut(s) | 131, 373, 1697, 2122, 3253, 3256, 3324, 3369 |
| GsuI | CTGGAG | 4 cut(s) | 629, 1188, 1917, 3122 |
| HaeIII | GGCC | 2 cut(s) | 464, 1731 |
| HapII | CCGG | 4 cut(s) | 191, 1471, 1811, 3082 |
| HgaI | GACGC | 2 cut(s) | 1554, 2689 |
| Hin1I | GRCGYC | 1 cut(s) | 2607 |
| HindIII | AAGCTT | 2 cut(s) | 2177, 2540 |
| HpaII | CCGG | 4 cut(s) | 191, 1471, 1811, 3082 |
| HphI | GGTGA | 5 cut(s) | 92, 2345, 2846, 3041, 3187 |
| Hpy166II | GTNNAC | 4 cut(s) | 712, 1393, 1544, 2072 |
| Hpy8I | GTNNAC | 4 cut(s) | 712, 1393, 1544, 2072 |
| Hpy99I | CGWCG | 2 cut(s) | 62, 3356 |
| HpyCH4IV | ACGT | 3 cut(s) | 60, 2607, 3110 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 470, 2539, 2706, 2900 |
| HpySE526I | ACGT | 3 cut(s) | 60, 2607, 3110 |
| Hsp92I | GRCGYC | 1 cut(s) | 2607 |
| Kpn2I | TCCGGA | 2 cut(s) | 190, 3081 |
| Ksp22I | TGATCA | 2 cut(s) | 1852, 3225 |
| LguI | GCTCTTC | 3 cut(s) | 1086, 1527, 3213 |
| LmnI | GCTCC | 7 cut(s) | 127, 193, 201, 540, 2248, 2951, 2988 |
| Lsp1109I | GCAGC | 6 cut(s) | 384, 1683, 2108, 3264, 3267, 3335 |
| LweI | GCATC | 9 cut(s) | 436, 559, 753, 1216, 2327, 2722, 2854, 3155, 3267 |
| MaeII | ACGT | 3 cut(s) | 60, 2607, 3110 |
| MaeIII | GTNAC | 8 cut(s) | 1024, 1367, 1626, 1907, 2834, 2842, 2853, 3028 |
| MbiI | CCGCTC | 1 cut(s) | 130 |
| MfeI | CAATTG | 7 cut(s) | 207, 2220, 2582, 2626, 2642, 2695, 2704 |
| MflI | RGATCY | 4 cut(s) | 343, 2478, 2653, 2956 |
| MhlI | GDGCHC | 6 cut(s) | 14, 198, 2229, 2905, 3199, 3210 |
| MlsI | TGGCCA | 1 cut(s) | 464 |
| MluNI | TGGCCA | 1 cut(s) | 464 |
| MlyI | GAGTC | 6 cut(s) | 1654, 1924, 2022, 2077, 2356, 2831 |
| MmeI | TCCRAC | 3 cut(s) | 105, 1076, 1748 |
| Mox20I | TGGCCA | 1 cut(s) | 464 |
| Mph1103I | ATGCAT | 4 cut(s) | 302, 1231, 2869, 3170 |
| MroI | TCCGGA | 2 cut(s) | 190, 3081 |
| MroXI | GAANNNNTTC | 5 cut(s) | 387, 598, 840, 1080, 2387 |
| MscI | TGGCCA | 1 cut(s) | 464 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2232, 3173 |
| Msp20I | TGGCCA | 1 cut(s) | 464 |
| MspCI | CTTAAG | 1 cut(s) | 2300 |
| MspI | CCGG | 4 cut(s) | 191, 1471, 1811, 3082 |
| MspR9I | CCNGG | 3 cut(s) | 1472, 1539, 2793 |
| MunI | CAATTG | 7 cut(s) | 207, 2220, 2582, 2626, 2642, 2695, 2704 |
| Mva1269I | GAATGC | 2 cut(s) | 302, 2523 |
| MvaI | CCWGG | 2 cut(s) | 1539, 2793 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 470, 2539, 2706, 2900 |
| NciI | CCSGG | 1 cut(s) | 1472 |
| NcoI | CCATGG | 1 cut(s) | 3300 |
| NdeI | CATATG | 1 cut(s) | 1048 |
| NlaIV | GGNNCC | 4 cut(s) | 345, 574, 2990, 3298 |
| NmuCI | GTSAC | 2 cut(s) | 1024, 2834 |
| NsiI | ATGCAT | 4 cut(s) | 302, 1231, 2869, 3170 |
| NspI | RCATGY | 3 cut(s) | 1019, 1350, 2871 |
| OliI | CACNNNNGTG | 1 cut(s) | 2232 |
| PaeR7I | CTCGAG | 1 cut(s) | 3144 |
| PagI | TCATGA | 1 cut(s) | 2938 |
| PciSI | GCTCTTC | 3 cut(s) | 1086, 1527, 3213 |
| PctI | GAATGC | 2 cut(s) | 302, 2523 |
| PdmI | GAANNNNTTC | 5 cut(s) | 387, 598, 840, 1080, 2387 |
| PfeI | GAWTC | 9 cut(s) | 138, 289, 599, 990, 1999, 2140, 2308, 2362, 2776 |
| PflFI | GACNNNGTC | 2 cut(s) | 1548, 1880 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 124 |
| PfoI | TCCNGGA | 1 cut(s) | 2791 |
| PkrI | GCNGC | 8 cut(s) | 132, 374, 1698, 2123, 3254, 3257, 3325, 3370 |
| PleI | GAGTC | 6 cut(s) | 1654, 1924, 2022, 2076, 2355, 2831 |
| PmaCI | CACGTG | 1 cut(s) | 3111 |
| PmlI | CACGTG | 1 cut(s) | 3111 |
| PpsI | GAGTC | 6 cut(s) | 1654, 1924, 2022, 2076, 2355, 2831 |
| Ppu21I | YACGTR | 1 cut(s) | 3111 |
| PshBI | ATTAAT | 1 cut(s) | 2553 |
| PsiI | TTATAA | 1 cut(s) | 2273 |
| Psp124BI | GAGCTC | 1 cut(s) | 198 |
| Psp6I | CCWGG | 2 cut(s) | 1537, 2791 |
| PspCI | CACGTG | 1 cut(s) | 3111 |
| PspGI | CCWGG | 2 cut(s) | 1537, 2791 |
| PspN4I | GGNNCC | 4 cut(s) | 345, 574, 2990, 3298 |
| PspPI | GGNCC | 1 cut(s) | 1730 |
| PspXI | VCTCGAGB | 1 cut(s) | 3144 |
| PstI | CTGCAG | 1 cut(s) | 3370 |
| PsuI | RGATCY | 4 cut(s) | 343, 2478, 2653, 2956 |
| PsyI | GACNNNGTC | 2 cut(s) | 1548, 1880 |
| RsaI | GTAC | 8 cut(s) | 500, 1020, 1211, 1364, 1984, 2632, 2913, 3203 |
| RsaNI | GTAC | 8 cut(s) | 499, 1019, 1210, 1363, 1983, 2631, 2912, 3202 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2232, 3173 |
| SacI | GAGCTC | 1 cut(s) | 198 |
| SapI | GCTCTTC | 3 cut(s) | 1086, 1527, 3213 |
| SatI | GCNGC | 8 cut(s) | 131, 373, 1697, 2122, 3253, 3256, 3324, 3369 |
| Sau96I | GGNCC | 1 cut(s) | 1730 |
| SchI | GAGTC | 6 cut(s) | 1654, 1924, 2022, 2077, 2356, 2831 |
| ScrFI | CCNGG | 3 cut(s) | 1472, 1539, 2793 |
| SduI | GDGCHC | 6 cut(s) | 14, 198, 2229, 2905, 3199, 3210 |
| SfaNI | GCATC | 9 cut(s) | 436, 559, 753, 1216, 2327, 2722, 2854, 3155, 3267 |
| SfcI | CTRYAG | 2 cut(s) | 3150, 3366 |
| Sfr274I | CTCGAG | 1 cut(s) | 3144 |
| SlaI | CTCGAG | 1 cut(s) | 3144 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2232, 3173 |
| SmlI | CTYRAG | 7 cut(s) | 1753, 1921, 1958, 2230, 2300, 2916, 3144 |
| SmoI | CTYRAG | 7 cut(s) | 1753, 1921, 1958, 2230, 2300, 2916, 3144 |
| SpeI | ACTAGT | 3 cut(s) | 706, 1021, 1387 |
| SsiI | CCGC | 7 cut(s) | 130, 902, 1354, 2657, 2764, 3193, 3333 |
| SspI | AATATT | 3 cut(s) | 1130, 1849, 3359 |
| SstI | GAGCTC | 1 cut(s) | 198 |
| StyD4I | CCNGG | 3 cut(s) | 1470, 1537, 2791 |
| StyI | CCWWGG | 1 cut(s) | 3300 |
| TaiI | ACGT | 3 cut(s) | 63, 2610, 3113 |
| TaqI | TCGA | 5 cut(s) | 32, 1899, 2978, 3135, 3145 |
| TatI | WGTACW | 3 cut(s) | 1018, 1209, 2630 |
| TauI | GCSGC | 1 cut(s) | 133 |
| TfiI | GAWTC | 9 cut(s) | 138, 289, 599, 990, 1999, 2140, 2308, 2362, 2776 |
| TscAI | CASTG | 2 cut(s) | 2760, 3204 |
| TseFI | GTSAC | 2 cut(s) | 1024, 2834 |
| TseI | GCWGC | 7 cut(s) | 372, 1696, 2121, 3252, 3255, 3323, 3368 |
| Tsp45I | GTSAC | 2 cut(s) | 1024, 2834 |
| TspGWI | ACGGA | 3 cut(s) | 1508, 2916, 3230 |
| TspRI | CASTG | 2 cut(s) | 2760, 3204 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1548, 1880 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 124 |
| Vha464I | CTTAAG | 1 cut(s) | 2300 |
| VspI | ATTAAT | 1 cut(s) | 2553 |
| XapI | RAATTY | 9 cut(s) | 810, 1191, 1329, 1736, 2034, 2041, 2147, 2442, 2802 |
| XbaI | TCTAGA | 2 cut(s) | 2615, 2953 |
| XceI | RCATGY | 3 cut(s) | 1019, 1350, 2871 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2999 |
| XhoI | CTCGAG | 1 cut(s) | 3144 |
| XmiI | GTMKAC | 2 cut(s) | 1392, 2071 |
| XmnI | GAANNNNTTC | 5 cut(s) | 387, 598, 840, 1080, 2387 |
| ZraI | GACGTC | 1 cut(s) | 2608 |
| Zsp2I | ATGCAT | 4 cut(s) | 302, 1231, 2869, 3170 |