TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 24 - 205 | 1.1e-50 | TIR domain |
| TIR_2 | PF13676 | 27 - 123 | 2.7e-18 | TIR domain |
| AAA_16 | PF13191 | 204 - 322 | 2.1e-06 | AAA ATPase domain |
| NB-ARC | PF00931 | 213 - 380 | 4e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 446 - 519 | 6.5e-13 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 807 - 897 | 1.2e-09 | Leucine-rich repeat region |
| C-JID | PF20160 | 981 - 1112 | 2.9e-14 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1799 |
| AccBSI | CCGCTC | 1 cut(s) | 1342 |
| AccI | GTMKAC | 3 cut(s) | 102, 1576, 2620 |
| AccII | CGCG | 1 cut(s) | 888 |
| AciI | CCGC | 6 cut(s) | 109, 1342, 2038, 2345, 2425, 3442 |
| AclWI | GGATC | 6 cut(s) | 359, 2013, 2029, 2310, 2395, 2450 |
| AcoI | YGGCCR | 1 cut(s) | 3081 |
| AcuI | CTGAAG | 2 cut(s) | 1746, 3374 |
| AcvI | CACGTG | 1 cut(s) | 224 |
| AcyI | GRCGYC | 1 cut(s) | 2638 |
| AfaI | GTAC | 8 cut(s) | 939, 1686, 1966, 2316, 2743, 2901, 3025, 3320 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1147, 2116, 2221, 2351, 2754 |
| AflII | CTTAAG | 1 cut(s) | 2308 |
| AjiI | CACGTC | 1 cut(s) | 949 |
| AjnI | CCWGG | 2 cut(s) | 1570, 2944 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 259, 291, 976, 1008, 1786, 1818 |
| AleI | CACNNNNGTG | 1 cut(s) | 3019 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 190, 222 |
| Alw21I | GWGCWC | 5 cut(s) | 20, 219, 1113, 1949, 2504 |
| Alw26I | GTCTC | 5 cut(s) | 353, 1379, 1991, 2247, 2289 |
| AlwI | GGATC | 6 cut(s) | 359, 2013, 2029, 2310, 2395, 2450 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1769 |
| Ama87I | CYCGRG | 3 cut(s) | 635, 2366, 2651 |
| AoxI | GGCC | 6 cut(s) | 1195, 2170, 2416, 2925, 2942, 3081 |
| ApeKI | GCWGC | 3 cut(s) | 1250, 2781, 3392 |
| AseI | ATTAAT | 4 cut(s) | 543, 1182, 1466, 2859 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 339, 625, 1776 |
| AspLEI | GCGC | 1 cut(s) | 888 |
| AspS9I | GGNCC | 3 cut(s) | 1766, 2416, 2926 |
| AsuC2I | CCSGG | 1 cut(s) | 2292 |
| AsuHPI | GGTGA | 4 cut(s) | 255, 1565, 2782, 3100 |
| AsuNHI | GCTAGC | 2 cut(s) | 1246, 3416 |
| AvaI | CYCGRG | 3 cut(s) | 635, 2366, 2651 |
| AvaII | GGWCC | 1 cut(s) | 1766 |
| AxyI | CCTNAGG | 1 cut(s) | 1146 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1676, 1709 |
| BalI | TGGCCA | 1 cut(s) | 3083 |
| BanII | GRGCYC | 4 cut(s) | 219, 1113, 1949, 3310 |
| BauI | CACGAG | 1 cut(s) | 3207 |
| BbrPI | CACGTG | 1 cut(s) | 224 |
| BbsI | GAAGAC | 3 cut(s) | 450, 1976, 2475 |
| Bbv12I | GWGCWC | 5 cut(s) | 20, 219, 1113, 1949, 2504 |
| BbvI | GCAGC | 3 cut(s) | 1237, 2793, 3404 |
| BccI | CCATC | 9 cut(s) | 60, 376, 694, 762, 1322, 1454, 1825, 2713, 3025 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1342, 1376 |
| BciT130I | CCWGG | 2 cut(s) | 1572, 2946 |
| BciVI | GTATCC | 2 cut(s) | 133, 499 |
| BcnI | CCSGG | 1 cut(s) | 2292 |
| BcoDI | GTCTC | 5 cut(s) | 353, 1379, 1991, 2247, 2289 |
| BfrI | CTTAAG | 1 cut(s) | 2308 |
| BfuI | GTATCC | 2 cut(s) | 133, 499 |
| BglII | AGATCT | 2 cut(s) | 1475, 3357 |
| BisI | GCNGC | 4 cut(s) | 1251, 2345, 2782, 3393 |
| BlpI | GCTNAGC | 1 cut(s) | 729 |
| BlsI | GCNGC | 4 cut(s) | 1252, 2346, 2783, 3394 |
| Bme1390I | CCNGG | 3 cut(s) | 1572, 2292, 2946 |
| Bme18I | GGWCC | 1 cut(s) | 1766 |
| BmeT110I | CYCGRG | 3 cut(s) | 635, 2366, 2651 |
| BmgBI | CACGTC | 1 cut(s) | 949 |
| BmgT120I | GGNCC | 3 cut(s) | 1766, 2416, 2926 |
| BmiI | GGNNCC | 3 cut(s) | 2329, 2417, 2928 |
| BmrFI | CCNGG | 3 cut(s) | 1572, 2292, 2946 |
| BmrI | ACTGGG | 1 cut(s) | 457 |
| BmsI | GCATC | 8 cut(s) | 44, 655, 1084, 1503, 2258, 2383, 2755, 2777 |
| BmtI | GCTAGC | 2 cut(s) | 1250, 3420 |
| BmuI | ACTGGG | 1 cut(s) | 457 |
| BpiI | GAAGAC | 3 cut(s) | 450, 1976, 2475 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 729 |
| BpuEI | CTTGAG | 7 cut(s) | 871, 1127, 1810, 2015, 2156, 2195, 2857 |
| BpuMI | CCSGG | 1 cut(s) | 2292 |
| BsaAI | YACGTR | 2 cut(s) | 224, 2192 |
| BsaHI | GRCGYC | 1 cut(s) | 2638 |
| BsaJI | CCNNGG | 2 cut(s) | 154, 2219 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1147, 2116, 2221, 2351, 2754 |
| Bse118I | RCCGGY | 1 cut(s) | 346 |
| Bse1I | ACTGG | 4 cut(s) | 463, 1443, 1690, 3035 |
| Bse21I | CCTNAGG | 1 cut(s) | 1146 |
| Bse3DI | GCAATG | 1 cut(s) | 2829 |
| BseBI | CCWGG | 2 cut(s) | 1572, 2946 |
| BseDI | CCNNGG | 2 cut(s) | 154, 2219 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1147, 2116, 2221, 2351, 2754 |
| BseMI | GCAATG | 1 cut(s) | 2829 |
| BseMII | CTCAG | 4 cut(s) | 894, 1137, 1718, 2886 |
| BseNI | ACTGG | 4 cut(s) | 463, 1443, 1690, 3035 |
| BseRI | GAGGAG | 2 cut(s) | 1472, 1694 |
| BseXI | GCAGC | 3 cut(s) | 1237, 2793, 3404 |
| BseYI | CCCAGC | 1 cut(s) | 3034 |
| BsgI | GTGCAG | 3 cut(s) | 584, 615, 1100 |
| Bsh1236I | CGCG | 1 cut(s) | 888 |
| Bsh1285I | CGRYCG | 1 cut(s) | 181 |
| BshFI | GGCC | 6 cut(s) | 1197, 2172, 2418, 2927, 2944, 3083 |
| BsiEI | CGRYCG | 1 cut(s) | 181 |
| BsiHKAI | GWGCWC | 5 cut(s) | 20, 219, 1113, 1949, 2504 |
| BsiHKCI | CYCGRG | 3 cut(s) | 635, 2366, 2651 |
| BsiSI | CCGG | 2 cut(s) | 347, 2292 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1147, 2116, 2221, 2351, 2754 |
| BsmAI | GTCTC | 5 cut(s) | 353, 1379, 1991, 2247, 2289 |
| BsmBI | CGTCTC | 1 cut(s) | 1991 |
| BsmI | GAATGC | 1 cut(s) | 894 |
| BsnI | GGCC | 6 cut(s) | 1197, 2172, 2418, 2927, 2944, 3083 |
| BsoBI | CYCGRG | 3 cut(s) | 635, 2366, 2651 |
| Bsp1286I | GDGCHC | 6 cut(s) | 20, 219, 1113, 1949, 2504, 3310 |
| Bsp1407I | TGTACA | 1 cut(s) | 3318 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 729 |
| BspACI | CCGC | 6 cut(s) | 109, 1342, 2038, 2345, 2425, 3442 |
| BspANI | GGCC | 6 cut(s) | 1197, 2172, 2418, 2927, 2944, 3083 |
| BspCNI | CTCAG | 4 cut(s) | 895, 1138, 1719, 2887 |
| BspFNI | CGCG | 1 cut(s) | 888 |
| BspHI | TCATGA | 1 cut(s) | 661 |
| BspLI | GGNNCC | 3 cut(s) | 2329, 2417, 2928 |
| BspOI | GCTAGC | 2 cut(s) | 1250, 3420 |
| BspPI | GGATC | 6 cut(s) | 359, 2013, 2029, 2310, 2395, 2450 |
| BspQI | GCTCTTC | 3 cut(s) | 876, 1332, 1343 |
| BspTI | CTTAAG | 1 cut(s) | 2308 |
| BsrBI | CCGCTC | 1 cut(s) | 1342 |
| BsrDI | GCAATG | 1 cut(s) | 2829 |
| BsrFI | RCCGGY | 1 cut(s) | 346 |
| BsrGI | TGTACA | 1 cut(s) | 3318 |
| BsrI | ACTGG | 4 cut(s) | 463, 1443, 1690, 3035 |
| BssAI | RCCGGY | 1 cut(s) | 346 |
| BssECI | CCNNGG | 2 cut(s) | 154, 2219 |
| BssNI | GRCGYC | 1 cut(s) | 2638 |
| BssSI | CACGAG | 1 cut(s) | 3207 |
| BssT1I | CCWWGG | 2 cut(s) | 154, 2219 |
| Bst2BI | CACGAG | 1 cut(s) | 3207 |
| Bst2UI | CCWGG | 2 cut(s) | 1572, 2946 |
| Bst6I | CTCTTC | 6 cut(s) | 876, 1332, 1343, 1955, 2438, 2706 |
| BstACI | GRCGYC | 1 cut(s) | 2638 |
| BstAFI | CTTAAG | 1 cut(s) | 2308 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2826 |
| BstAUI | TGTACA | 1 cut(s) | 3318 |
| BstBAI | YACGTR | 2 cut(s) | 224, 2192 |
| BstC8I | GCNNGC | 7 cut(s) | 563, 579, 1121, 1125, 1248, 1667, 3418 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2752 |
| BstFNI | CGCG | 1 cut(s) | 888 |
| BstHHI | GCGC | 1 cut(s) | 888 |
| BstMAI | GTCTC | 5 cut(s) | 353, 1379, 1991, 2247, 2289 |
| BstMCI | CGRYCG | 1 cut(s) | 181 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 327, 665, 1396, 2103, 2424, 2637, 2826 |
| BstNI | CCWGG | 2 cut(s) | 1572, 2946 |
| BstNSI | RCATGY | 2 cut(s) | 1127, 1374 |
| BstSCI | CCNGG | 3 cut(s) | 1570, 2290, 2944 |
| BstSNI | TACGTA | 1 cut(s) | 2192 |
| BstUI | CGCG | 1 cut(s) | 888 |
| BstV1I | GCAGC | 3 cut(s) | 1237, 2793, 3404 |
| BstV2I | GAAGAC | 3 cut(s) | 450, 1976, 2475 |
| BstX2I | RGATCY | 4 cut(s) | 1475, 2005, 2034, 3357 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 761, 3034 |
| BstYI | RGATCY | 4 cut(s) | 1475, 2005, 2034, 3357 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1146 |
| BsuI | GTATCC | 2 cut(s) | 133, 499 |
| BsuRI | GGCC | 6 cut(s) | 1197, 2172, 2418, 2927, 2944, 3083 |
| BtrI | CACGTC | 1 cut(s) | 949 |
| BtsIMutI | CAGTG | 6 cut(s) | 470, 900, 1697, 1984, 2892, 3350 |
| Cac8I | GCNNGC | 7 cut(s) | 563, 579, 1121, 1125, 1248, 1667, 3418 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1769 |
| CciI | TCATGA | 1 cut(s) | 661 |
| CfoI | GCGC | 1 cut(s) | 888 |
| Cfr10I | RCCGGY | 1 cut(s) | 346 |
| Cfr13I | GGNCC | 3 cut(s) | 1766, 2416, 2926 |
| CseI | GACGC | 2 cut(s) | 2645, 2646 |
| Csp6I | GTAC | 8 cut(s) | 938, 1685, 1965, 2315, 2742, 2900, 3024, 3319 |
| CviQI | GTAC | 8 cut(s) | 938, 1685, 1965, 2315, 2742, 2900, 3024, 3319 |
| DraI | TTTAAA | 2 cut(s) | 523, 1132 |
| EaeI | YGGCCR | 1 cut(s) | 3081 |
| Eam1104I | CTCTTC | 6 cut(s) | 876, 1332, 1343, 1955, 2438, 2706 |
| EarI | CTCTTC | 6 cut(s) | 876, 1332, 1343, 1955, 2438, 2706 |
| EciI | GGCGGA | 1 cut(s) | 2027 |
| Ecl136II | GAGCTC | 3 cut(s) | 217, 1111, 1947 |
| Eco105I | TACGTA | 1 cut(s) | 2192 |
| Eco130I | CCWWGG | 2 cut(s) | 154, 2219 |
| Eco147I | AGGCCT | 1 cut(s) | 1197 |
| Eco24I | GRGCYC | 4 cut(s) | 219, 1113, 1949, 3310 |
| Eco32I | GATATC | 1 cut(s) | 2551 |
| Eco47I | GGWCC | 1 cut(s) | 1766 |
| Eco53kI | GAGCTC | 3 cut(s) | 217, 1111, 1947 |
| Eco57I | CTGAAG | 2 cut(s) | 1746, 3374 |
| Eco72I | CACGTG | 1 cut(s) | 224 |
| Eco81I | CCTNAGG | 1 cut(s) | 1146 |
| Eco88I | CYCGRG | 3 cut(s) | 635, 2366, 2651 |
| EcoICRI | GAGCTC | 3 cut(s) | 217, 1111, 1947 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2752 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1766, 2416, 2926 |
| EcoRI | GAATTC | 1 cut(s) | 1739 |
| EcoRII | CCWGG | 2 cut(s) | 1570, 2944 |
| EcoRV | GATATC | 1 cut(s) | 2551 |
| EcoT14I | CCWWGG | 2 cut(s) | 154, 2219 |
| EcoT22I | ATGCAT | 3 cut(s) | 323, 1518, 2770 |
| EcoT38I | GRGCYC | 4 cut(s) | 219, 1113, 1949, 3310 |
| ErhI | CCWWGG | 2 cut(s) | 154, 2219 |
| Esp3I | CGTCTC | 1 cut(s) | 1991 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2331, 2363 |
| FauI | CCCGC | 2 cut(s) | 116, 1335 |
| FauNDI | CATATG | 1 cut(s) | 1508 |
| FblI | GTMKAC | 3 cut(s) | 102, 1576, 2620 |
| Fnu4HI | GCNGC | 4 cut(s) | 1251, 2345, 2782, 3393 |
| FriOI | GRGCYC | 4 cut(s) | 219, 1113, 1949, 3310 |
| Fsp4HI | GCNGC | 4 cut(s) | 1251, 2345, 2782, 3393 |
| GlaI | GCGC | 1 cut(s) | 887 |
| GluI | GCNGC | 4 cut(s) | 1251, 2345, 2782, 3393 |
| GsaI | CCCAGC | 1 cut(s) | 3038 |
| HaeIII | GGCC | 6 cut(s) | 1197, 2172, 2418, 2927, 2944, 3083 |
| HapII | CCGG | 2 cut(s) | 347, 2292 |
| HgaI | GACGC | 2 cut(s) | 2645, 2646 |
| HhaI | GCGC | 1 cut(s) | 888 |
| Hin1I | GRCGYC | 1 cut(s) | 2638 |
| Hin6I | GCGC | 1 cut(s) | 886 |
| HinP1I | GCGC | 1 cut(s) | 886 |
| HincII | GTYRAC | 3 cut(s) | 103, 459, 2760 |
| HindII | GTYRAC | 3 cut(s) | 103, 459, 2760 |
| HpaII | CCGG | 2 cut(s) | 347, 2292 |
| HphI | GGTGA | 4 cut(s) | 255, 1565, 2782, 3100 |
| Hpy188I | TCNGA | 7 cut(s) | 373, 529, 620, 791, 2392, 3124, 3181 |
| Hpy99I | CGWCG | 1 cut(s) | 3105 |
| HpyCH4IV | ACGT | 5 cut(s) | 223, 948, 2000, 2191, 2518 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 327, 665, 1396, 2103, 2424, 2637, 2826 |
| HpySE526I | ACGT | 5 cut(s) | 223, 948, 2000, 2191, 2518 |
| Hsp92I | GRCGYC | 1 cut(s) | 2638 |
| HspAI | GCGC | 1 cut(s) | 886 |
| LguI | GCTCTTC | 3 cut(s) | 876, 1332, 1343 |
| LmnI | GCTCC | 7 cut(s) | 222, 415, 1396, 1640, 1944, 1952, 3004 |
| Lsp1109I | GCAGC | 3 cut(s) | 1237, 2793, 3404 |
| LweI | GCATC | 8 cut(s) | 44, 655, 1084, 1503, 2258, 2383, 2755, 2777 |
| MaeII | ACGT | 5 cut(s) | 223, 948, 2000, 2191, 2518 |
| MaeIII | GTNAC | 4 cut(s) | 1021, 1553, 2514, 3455 |
| MbiI | CCGCTC | 1 cut(s) | 1342 |
| MfeI | CAATTG | 2 cut(s) | 1501, 1644 |
| MflI | RGATCY | 4 cut(s) | 1475, 2005, 2034, 3357 |
| MhlI | GDGCHC | 6 cut(s) | 20, 219, 1113, 1949, 2504, 3310 |
| MlsI | TGGCCA | 1 cut(s) | 3083 |
| MluNI | TGGCCA | 1 cut(s) | 3083 |
| MlyI | GAGTC | 2 cut(s) | 1568, 2455 |
| MmeI | TCCRAC | 8 cut(s) | 358, 598, 1075, 1319, 1856, 1983, 2834, 3113 |
| Mox20I | TGGCCA | 1 cut(s) | 3083 |
| Mph1103I | ATGCAT | 3 cut(s) | 323, 1518, 2770 |
| MroXI | GAANNNNTTC | 3 cut(s) | 339, 625, 1776 |
| MscI | TGGCCA | 1 cut(s) | 3083 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1511, 3019, 3411 |
| Msp20I | TGGCCA | 1 cut(s) | 3083 |
| MspCI | CTTAAG | 1 cut(s) | 2308 |
| MspI | CCGG | 2 cut(s) | 347, 2292 |
| MspR9I | CCNGG | 3 cut(s) | 1572, 2292, 2946 |
| MunI | CAATTG | 2 cut(s) | 1501, 1644 |
| Mva1269I | GAATGC | 1 cut(s) | 894 |
| MvaI | CCWGG | 2 cut(s) | 1572, 2946 |
| MvnI | CGCG | 1 cut(s) | 888 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 327, 665, 1396, 2103, 2424, 2637, 2826 |
| NciI | CCSGG | 1 cut(s) | 2292 |
| NdeI | CATATG | 1 cut(s) | 1508 |
| NheI | GCTAGC | 2 cut(s) | 1246, 3416 |
| NlaIV | GGNNCC | 3 cut(s) | 2329, 2417, 2928 |
| NmuCI | GTSAC | 2 cut(s) | 1021, 1553 |
| NsiI | ATGCAT | 3 cut(s) | 323, 1518, 2770 |
| NspI | RCATGY | 2 cut(s) | 1127, 1374 |
| OliI | CACNNNNGTG | 1 cut(s) | 3019 |
| PaeI | GCATGC | 1 cut(s) | 1127 |
| PaeR7I | CTCGAG | 3 cut(s) | 635, 2366, 2651 |
| PagI | TCATGA | 1 cut(s) | 661 |
| PceI | AGGCCT | 1 cut(s) | 1197 |
| PciSI | GCTCTTC | 3 cut(s) | 876, 1332, 1343 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 558 |
| PctI | GAATGC | 1 cut(s) | 894 |
| PdmI | GAANNNNTTC | 3 cut(s) | 339, 625, 1776 |
| PflFI | GACNNNGTC | 1 cut(s) | 551 |
| PfoI | TCCNGGA | 1 cut(s) | 2290 |
| PkrI | GCNGC | 4 cut(s) | 1252, 2346, 2783, 3394 |
| Ple19I | CGATCG | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 1567, 2454 |
| PmaCI | CACGTG | 1 cut(s) | 224 |
| PmlI | CACGTG | 1 cut(s) | 224 |
| PpsI | GAGTC | 2 cut(s) | 1567, 2454 |
| Ppu21I | YACGTR | 2 cut(s) | 224, 2192 |
| PpuMI | RGGWCCY | 1 cut(s) | 1766 |
| PshBI | ATTAAT | 4 cut(s) | 543, 1182, 1466, 2859 |
| PsiI | TTATAA | 1 cut(s) | 1799 |
| Psp124BI | GAGCTC | 3 cut(s) | 219, 1113, 1949 |
| Psp5II | RGGWCCY | 1 cut(s) | 1766 |
| Psp6I | CCWGG | 2 cut(s) | 1570, 2944 |
| PspCI | CACGTG | 1 cut(s) | 224 |
| PspFI | CCCAGC | 1 cut(s) | 3034 |
| PspGI | CCWGG | 2 cut(s) | 1570, 2944 |
| PspN4I | GGNNCC | 3 cut(s) | 2329, 2417, 2928 |
| PspPI | GGNCC | 3 cut(s) | 1766, 2416, 2926 |
| PspPPI | RGGWCCY | 1 cut(s) | 1766 |
| PspXI | VCTCGAGB | 2 cut(s) | 635, 2651 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1769 |
| PsuI | RGATCY | 4 cut(s) | 1475, 2005, 2034, 3357 |
| PsyI | GACNNNGTC | 1 cut(s) | 551 |
| PvuI | CGATCG | 1 cut(s) | 181 |
| RsaI | GTAC | 8 cut(s) | 939, 1686, 1966, 2316, 2743, 2901, 3025, 3320 |
| RsaNI | GTAC | 8 cut(s) | 938, 1685, 1965, 2315, 2742, 2900, 3024, 3319 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1511, 3019, 3411 |
| SacI | GAGCTC | 3 cut(s) | 219, 1113, 1949 |
| SalI | GTCGAC | 1 cut(s) | 101 |
| SapI | GCTCTTC | 3 cut(s) | 876, 1332, 1343 |
| SatI | GCNGC | 4 cut(s) | 1251, 2345, 2782, 3393 |
| Sau96I | GGNCC | 3 cut(s) | 1766, 2416, 2926 |
| SchI | GAGTC | 2 cut(s) | 1568, 2455 |
| ScrFI | CCNGG | 3 cut(s) | 1572, 2292, 2946 |
| SduI | GDGCHC | 6 cut(s) | 20, 219, 1113, 1949, 2504, 3310 |
| SfaNI | GCATC | 8 cut(s) | 44, 655, 1084, 1503, 2258, 2383, 2755, 2777 |
| Sfr274I | CTCGAG | 3 cut(s) | 635, 2366, 2651 |
| SinI | GGWCC | 1 cut(s) | 1766 |
| SlaI | CTCGAG | 3 cut(s) | 635, 2366, 2651 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1511, 3019, 3411 |
| SnaBI | TACGTA | 1 cut(s) | 2192 |
| SphI | GCATGC | 1 cut(s) | 1127 |
| SseBI | AGGCCT | 1 cut(s) | 1197 |
| SsiI | CCGC | 6 cut(s) | 109, 1342, 2038, 2345, 2425, 3442 |
| SspI | AATATT | 1 cut(s) | 2868 |
| SstI | GAGCTC | 3 cut(s) | 219, 1113, 1949 |
| StuI | AGGCCT | 1 cut(s) | 1197 |
| StyD4I | CCNGG | 3 cut(s) | 1570, 2290, 2944 |
| StyI | CCWWGG | 2 cut(s) | 154, 2219 |
| TaiI | ACGT | 5 cut(s) | 226, 951, 2003, 2194, 2521 |
| TaqI | TCGA | 8 cut(s) | 102, 181, 636, 969, 1362, 1743, 2367, 2652 |
| TatI | WGTACW | 2 cut(s) | 2741, 3318 |
| TauI | GCSGC | 1 cut(s) | 2347 |
| TscAI | CASTG | 6 cut(s) | 470, 907, 1697, 1984, 2899, 3357 |
| TseFI | GTSAC | 2 cut(s) | 1021, 1553 |
| TseI | GCWGC | 3 cut(s) | 1250, 2781, 3392 |
| Tsp45I | GTSAC | 2 cut(s) | 1021, 1553 |
| TspGWI | ACGGA | 3 cut(s) | 428, 622, 2566 |
| TspRI | CASTG | 6 cut(s) | 470, 907, 1697, 1984, 2899, 3357 |
| Tth111I | GACNNNGTC | 1 cut(s) | 551 |
| Vha464I | CTTAAG | 1 cut(s) | 2308 |
| VpaK11BI | GGWCC | 1 cut(s) | 1766 |
| VspI | ATTAAT | 4 cut(s) | 543, 1182, 1466, 2859 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2752 |
| XbaI | TCTAGA | 2 cut(s) | 2521, 2731 |
| XceI | RCATGY | 2 cut(s) | 1127, 1374 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 289, 2937 |
| XhoI | CTCGAG | 3 cut(s) | 635, 2366, 2651 |
| XmiI | GTMKAC | 3 cut(s) | 102, 1576, 2620 |
| XmnI | GAANNNNTTC | 3 cut(s) | 339, 625, 1776 |
| Zsp2I | ATGCAT | 3 cut(s) | 323, 1518, 2770 |