TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 2 - 36 | 1.3e-07 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 373 |
| AclWI | GGATC | 2 cut(s) | 190, 574 |
| AcsI | RAATTY | 2 cut(s) | 221, 568 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AfaI | GTAC | 2 cut(s) | 50, 565 |
| AfeI | AGCGCT | 1 cut(s) | 458 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 307 |
| AflII | CTTAAG | 1 cut(s) | 31 |
| AgsI | TTSAA | 7 cut(s) | 42, 197, 227, 389, 472, 533, 557 |
| AjnI | CCWGG | 1 cut(s) | 118 |
| AluBI | AGCT | 3 cut(s) | 271, 354, 547 |
| AluI | AGCT | 3 cut(s) | 271, 354, 547 |
| AlwI | GGATC | 2 cut(s) | 190, 574 |
| Ama87I | CYCGRG | 2 cut(s) | 214, 539 |
| Aor51HI | AGCGCT | 1 cut(s) | 458 |
| AoxI | GGCC | 1 cut(s) | 310 |
| ApaI | GGGCCC | 1 cut(s) | 314 |
| ApeKI | GCWGC | 1 cut(s) | 418 |
| ApoI | RAATTY | 2 cut(s) | 221, 568 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 93 |
| AspLEI | GCGC | 1 cut(s) | 459 |
| AspS9I | GGNCC | 3 cut(s) | 310, 311, 510 |
| AvaI | CYCGRG | 2 cut(s) | 214, 539 |
| AvaII | GGWCC | 1 cut(s) | 510 |
| BaeGI | GKGCMC | 1 cut(s) | 314 |
| BanII | GRGCYC | 1 cut(s) | 314 |
| BbvCI | CCTCAGC | 1 cut(s) | 272 |
| BbvI | GCAGC | 1 cut(s) | 430 |
| BccI | CCATC | 1 cut(s) | 440 |
| BciT130I | CCWGG | 1 cut(s) | 120 |
| BciVI | GTATCC | 1 cut(s) | 369 |
| BfmI | CTRYAG | 1 cut(s) | 416 |
| BfoI | RGCGCY | 1 cut(s) | 460 |
| BfrI | CTTAAG | 1 cut(s) | 31 |
| BfuI | GTATCC | 1 cut(s) | 369 |
| BisI | GCNGC | 1 cut(s) | 419 |
| BlsI | GCNGC | 1 cut(s) | 420 |
| Bme1390I | CCNGG | 1 cut(s) | 120 |
| Bme18I | GGWCC | 1 cut(s) | 510 |
| BmeT110I | CYCGRG | 2 cut(s) | 214, 539 |
| BmgT120I | GGNCC | 3 cut(s) | 310, 311, 510 |
| BmiI | GGNNCC | 4 cut(s) | 117, 312, 313, 512 |
| BmrFI | CCNGG | 1 cut(s) | 120 |
| BoxI | GACNNNNGTC | 1 cut(s) | 103 |
| Bpu10I | CCTNAGC | 1 cut(s) | 272 |
| Bsa29I | ATCGAT | 1 cut(s) | 480 |
| BsaWI | WCCGGW | 1 cut(s) | 391 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 307 |
| Bse1I | ACTGG | 1 cut(s) | 242 |
| Bse3DI | GCAATG | 1 cut(s) | 583 |
| BseBI | CCWGG | 1 cut(s) | 120 |
| BseCI | ATCGAT | 1 cut(s) | 480 |
| BseGI | GGATG | 3 cut(s) | 285, 400, 451 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BseMI | GCAATG | 1 cut(s) | 583 |
| BseMII | CTCAG | 1 cut(s) | 263 |
| BseNI | ACTGG | 1 cut(s) | 242 |
| BseRI | GAGGAG | 2 cut(s) | 128, 557 |
| BseSI | GKGCMC | 1 cut(s) | 314 |
| BseXI | GCAGC | 1 cut(s) | 430 |
| BshFI | GGCC | 1 cut(s) | 312 |
| BshVI | ATCGAT | 1 cut(s) | 480 |
| BsiHKCI | CYCGRG | 2 cut(s) | 214, 539 |
| BsiSI | CCGG | 1 cut(s) | 392 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 307 |
| BsmI | GAATGC | 1 cut(s) | 251 |
| BsnI | GGCC | 1 cut(s) | 312 |
| BsoBI | CYCGRG | 2 cut(s) | 214, 539 |
| Bsp120I | GGGCCC | 1 cut(s) | 310 |
| Bsp1286I | GDGCHC | 1 cut(s) | 314 |
| Bsp1407I | TGTACA | 1 cut(s) | 563 |
| Bsp143I | GATC | 4 cut(s) | 182, 433, 481, 579 |
| BspANI | GGCC | 1 cut(s) | 312 |
| BspCNI | CTCAG | 1 cut(s) | 264 |
| BspDI | ATCGAT | 1 cut(s) | 480 |
| BspLI | GGNNCC | 4 cut(s) | 117, 312, 313, 512 |
| BspMAI | CTGCAG | 1 cut(s) | 420 |
| BspPI | GGATC | 2 cut(s) | 190, 574 |
| BspTI | CTTAAG | 1 cut(s) | 31 |
| BsrDI | GCAATG | 1 cut(s) | 583 |
| BsrGI | TGTACA | 1 cut(s) | 563 |
| BsrI | ACTGG | 1 cut(s) | 242 |
| BssMI | GATC | 4 cut(s) | 182, 433, 481, 579 |
| Bst2UI | CCWGG | 1 cut(s) | 120 |
| Bst6I | CTCTTC | 1 cut(s) | 222 |
| BstAFI | CTTAAG | 1 cut(s) | 31 |
| BstAUI | TGTACA | 1 cut(s) | 563 |
| BstDEI | CTNAG | 6 cut(s) | 258, 272, 306, 410, 485, 603 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 305 |
| BstF5I | GGATG | 3 cut(s) | 285, 400, 451 |
| BstH2I | RGCGCY | 1 cut(s) | 460 |
| BstHHI | GCGC | 1 cut(s) | 459 |
| BstKTI | GATC | 4 cut(s) | 185, 436, 484, 582 |
| BstMBI | GATC | 4 cut(s) | 182, 433, 481, 579 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 277 |
| BstNI | CCWGG | 1 cut(s) | 120 |
| BstNSI | RCATGY | 1 cut(s) | 164 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 103 |
| BstSCI | CCNGG | 1 cut(s) | 118 |
| BstSFI | CTRYAG | 1 cut(s) | 416 |
| BstSLI | GKGCMC | 1 cut(s) | 314 |
| BstV1I | GCAGC | 1 cut(s) | 430 |
| BstX2I | RGATCY | 1 cut(s) | 579 |
| BstYI | RGATCY | 1 cut(s) | 579 |
| Bsu15I | ATCGAT | 1 cut(s) | 480 |
| BsuI | GTATCC | 1 cut(s) | 369 |
| BsuRI | GGCC | 1 cut(s) | 312 |
| BsuTUI | ATCGAT | 1 cut(s) | 480 |
| BtsCI | GGATG | 3 cut(s) | 285, 400, 451 |
| BtsIMutI | CAGTG | 1 cut(s) | 235 |
| CfoI | GCGC | 1 cut(s) | 459 |
| Cfr13I | GGNCC | 3 cut(s) | 310, 311, 510 |
| ClaI | ATCGAT | 1 cut(s) | 480 |
| Csp6I | GTAC | 2 cut(s) | 49, 564 |
| CviAII | CATG | 3 cut(s) | 62, 84, 161 |
| CviJI | RGCY | 8 cut(s) | 118, 142, 271, 300, 312, 354, 547, 602 |
| CviKI_1 | RGCY | 8 cut(s) | 118, 142, 271, 300, 312, 354, 547, 602 |
| CviQI | GTAC | 2 cut(s) | 49, 564 |
| DdeI | CTNAG | 6 cut(s) | 258, 272, 306, 410, 485, 603 |
| DpnI | GATC | 4 cut(s) | 184, 435, 483, 581 |
| DpnII | GATC | 4 cut(s) | 182, 433, 481, 579 |
| Eam1104I | CTCTTC | 1 cut(s) | 222 |
| EarI | CTCTTC | 1 cut(s) | 222 |
| Eco24I | GRGCYC | 1 cut(s) | 314 |
| Eco32I | GATATC | 1 cut(s) | 154 |
| Eco47I | GGWCC | 1 cut(s) | 510 |
| Eco47III | AGCGCT | 1 cut(s) | 458 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| Eco88I | CYCGRG | 2 cut(s) | 214, 539 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 305 |
| EcoO109I | RGGNCCY | 3 cut(s) | 310, 311, 510 |
| EcoRII | CCWGG | 1 cut(s) | 118 |
| EcoRV | GATATC | 1 cut(s) | 154 |
| EcoT22I | ATGCAT | 2 cut(s) | 63, 334 |
| EcoT38I | GRGCYC | 1 cut(s) | 314 |
| FaeI | CATG | 3 cut(s) | 65, 87, 164 |
| FaiI | YATR | 7 cut(s) | 59, 63, 85, 162, 203, 291, 423 |
| FatI | CATG | 3 cut(s) | 61, 83, 160 |
| FblI | GTMKAC | 1 cut(s) | 373 |
| Fnu4HI | GCNGC | 1 cut(s) | 419 |
| FokI | GGATG | 3 cut(s) | 272, 407, 458 |
| FriOI | GRGCYC | 1 cut(s) | 314 |
| Fsp4HI | GCNGC | 1 cut(s) | 419 |
| GlaI | GCGC | 1 cut(s) | 458 |
| GluI | GCNGC | 1 cut(s) | 419 |
| HaeII | RGCGCY | 1 cut(s) | 460 |
| HaeIII | GGCC | 1 cut(s) | 312 |
| HapII | CCGG | 1 cut(s) | 392 |
| HhaI | GCGC | 1 cut(s) | 459 |
| Hin1II | CATG | 3 cut(s) | 65, 87, 164 |
| Hin6I | GCGC | 1 cut(s) | 457 |
| HinP1I | GCGC | 1 cut(s) | 457 |
| HinfI | GANTC | 2 cut(s) | 104, 241 |
| HpaII | CCGG | 1 cut(s) | 392 |
| Hpy166II | GTNNAC | 1 cut(s) | 374 |
| Hpy188I | TCNGA | 2 cut(s) | 187, 367 |
| Hpy188III | TCNNGA | 3 cut(s) | 245, 539, 554 |
| Hpy8I | GTNNAC | 1 cut(s) | 374 |
| HpyAV | CCTTC | 2 cut(s) | 191, 551 |
| HpyCH4IV | ACGT | 1 cut(s) | 51 |
| HpyCH4V | TGCA | 4 cut(s) | 61, 160, 332, 418 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 277 |
| HpyF3I | CTNAG | 6 cut(s) | 258, 272, 306, 410, 485, 603 |
| HpySE526I | ACGT | 1 cut(s) | 51 |
| Hsp92II | CATG | 3 cut(s) | 65, 87, 164 |
| HspAI | GCGC | 1 cut(s) | 457 |
| Kzo9I | GATC | 4 cut(s) | 182, 433, 481, 579 |
| LmnI | GCTCC | 4 cut(s) | 115, 285, 351, 544 |
| LpnPI | CCDG | 9 cut(s) | 105, 132, 223, 258, 340, 405, 510, 528, 533 |
| Lsp1109I | GCAGC | 1 cut(s) | 430 |
| MaeII | ACGT | 1 cut(s) | 51 |
| MaeIII | GTNAC | 1 cut(s) | 488 |
| MalI | GATC | 4 cut(s) | 184, 435, 483, 581 |
| MboI | GATC | 4 cut(s) | 182, 433, 481, 579 |
| MboII | GAAGA | 2 cut(s) | 239, 314 |
| MfeI | CAATTG | 1 cut(s) | 192 |
| MflI | RGATCY | 1 cut(s) | 579 |
| MhlI | GDGCHC | 1 cut(s) | 314 |
| MluCI | AATT | 7 cut(s) | 90, 192, 221, 381, 429, 568, 573 |
| MlyI | GAGTC | 1 cut(s) | 113 |
| MnlI | CCTC | 6 cut(s) | 106, 181, 223, 267, 373, 535 |
| Mph1103I | ATGCAT | 2 cut(s) | 63, 334 |
| MroXI | GAANNNNTTC | 1 cut(s) | 93 |
| MseI | TTAA | 4 cut(s) | 32, 335, 572, 576 |
| MslI | CAYNNNNRTG | 1 cut(s) | 260 |
| MspCI | CTTAAG | 1 cut(s) | 31 |
| MspI | CCGG | 1 cut(s) | 392 |
| MspR9I | CCNGG | 1 cut(s) | 120 |
| MunI | CAATTG | 1 cut(s) | 192 |
| Mva1269I | GAATGC | 1 cut(s) | 251 |
| MvaI | CCWGG | 1 cut(s) | 120 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 277 |
| NdeII | GATC | 4 cut(s) | 182, 433, 481, 579 |
| NlaIII | CATG | 3 cut(s) | 65, 87, 164 |
| NlaIV | GGNNCC | 4 cut(s) | 117, 312, 313, 512 |
| NsiI | ATGCAT | 2 cut(s) | 63, 334 |
| NspI | RCATGY | 1 cut(s) | 164 |
| PacI | TTAATTAA | 1 cut(s) | 576 |
| PaeR7I | CTCGAG | 2 cut(s) | 214, 539 |
| PctI | GAATGC | 1 cut(s) | 251 |
| PdmI | GAANNNNTTC | 1 cut(s) | 93 |
| PfeI | GAWTC | 1 cut(s) | 241 |
| PflFI | GACNNNGTC | 1 cut(s) | 411 |
| PkrI | GCNGC | 1 cut(s) | 420 |
| PleI | GAGTC | 1 cut(s) | 112 |
| PpsI | GAGTC | 1 cut(s) | 112 |
| PpuMI | RGGWCCY | 1 cut(s) | 510 |
| PshAI | GACNNNNGTC | 1 cut(s) | 103 |
| Psp5II | RGGWCCY | 1 cut(s) | 510 |
| Psp6I | CCWGG | 1 cut(s) | 118 |
| PspGI | CCWGG | 1 cut(s) | 118 |
| PspN4I | GGNNCC | 4 cut(s) | 117, 312, 313, 512 |
| PspOMI | GGGCCC | 1 cut(s) | 310 |
| PspPI | GGNCC | 3 cut(s) | 310, 311, 510 |
| PspPPI | RGGWCCY | 1 cut(s) | 510 |
| PspXI | VCTCGAGB | 1 cut(s) | 214 |
| PstI | CTGCAG | 1 cut(s) | 420 |
| PsuI | RGATCY | 1 cut(s) | 579 |
| PsyI | GACNNNGTC | 1 cut(s) | 411 |
| RsaI | GTAC | 2 cut(s) | 50, 565 |
| RsaNI | GTAC | 2 cut(s) | 49, 564 |
| RseI | CAYNNNNRTG | 1 cut(s) | 260 |
| SaqAI | TTAA | 4 cut(s) | 32, 335, 572, 576 |
| SatI | GCNGC | 1 cut(s) | 419 |
| Sau3AI | GATC | 4 cut(s) | 182, 433, 481, 579 |
| Sau96I | GGNCC | 3 cut(s) | 310, 311, 510 |
| SchI | GAGTC | 1 cut(s) | 113 |
| ScrFI | CCNGG | 1 cut(s) | 120 |
| SduI | GDGCHC | 1 cut(s) | 314 |
| SetI | ASST | 8 cut(s) | 54, 124, 273, 278, 356, 529, 549, 562 |
| SfcI | CTRYAG | 1 cut(s) | 416 |
| Sfr274I | CTCGAG | 2 cut(s) | 214, 539 |
| SinI | GGWCC | 1 cut(s) | 510 |
| SlaI | CTCGAG | 2 cut(s) | 214, 539 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 260 |
| SmlI | CTYRAG | 3 cut(s) | 31, 214, 539 |
| SmoI | CTYRAG | 3 cut(s) | 31, 214, 539 |
| Sse9I | AATT | 7 cut(s) | 90, 192, 221, 381, 429, 568, 573 |
| StyD4I | CCNGG | 1 cut(s) | 118 |
| TaiI | ACGT | 1 cut(s) | 54 |
| TaqI | TCGA | 5 cut(s) | 97, 107, 215, 480, 540 |
| TasI | AATT | 7 cut(s) | 90, 192, 221, 381, 429, 568, 573 |
| TatI | WGTACW | 1 cut(s) | 563 |
| TfiI | GAWTC | 1 cut(s) | 241 |
| Tru1I | TTAA | 4 cut(s) | 32, 335, 572, 576 |
| Tru9I | TTAA | 4 cut(s) | 32, 335, 572, 576 |
| TscAI | CASTG | 1 cut(s) | 242 |
| TseI | GCWGC | 1 cut(s) | 418 |
| TspDTI | ATGAA | 1 cut(s) | 411 |
| TspRI | CASTG | 1 cut(s) | 242 |
| Tth111I | GACNNNGTC | 1 cut(s) | 411 |
| Vha464I | CTTAAG | 1 cut(s) | 31 |
| VpaK11BI | GGWCC | 1 cut(s) | 510 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 305 |
| XapI | RAATTY | 2 cut(s) | 221, 568 |
| XceI | RCATGY | 1 cut(s) | 164 |
| XhoI | CTCGAG | 2 cut(s) | 214, 539 |
| XmiI | GTMKAC | 1 cut(s) | 373 |
| XmnI | GAANNNNTTC | 1 cut(s) | 93 |
| Zsp2I | ATGCAT | 2 cut(s) | 63, 334 |