TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 19 - 194 | 9.4e-47 | TIR domain |
| TIR_2 | PF13676 | 22 - 114 | 2.7e-15 | TIR domain |
| NB-ARC | PF00931 | 213 - 368 | 6.3e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 436 - 506 | 3.6e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 683 - 779 | 3e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 695 - 780 | 7.2e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 747 - 822 | 3.5e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 849 - 955 | 5.1e-09 | Leucine-rich repeat region |
| C-JID | PF20160 | 1002 - 1150 | 1.1e-13 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2212 |
| Acc36I | ACCTGC | 1 cut(s) | 2212 |
| AccB1I | GGYRCC | 1 cut(s) | 2479 |
| AccI | GTMKAC | 2 cut(s) | 522, 3221 |
| AccII | CGCG | 2 cut(s) | 777, 2463 |
| AciI | CCGC | 6 cut(s) | 47, 777, 1787, 1935, 2463, 2919 |
| AclI | AACGTT | 1 cut(s) | 828 |
| AcoI | YGGCCR | 1 cut(s) | 3262 |
| AcuI | CTGAAG | 7 cut(s) | 1058, 1650, 2144, 2396, 2747, 3150, 3428 |
| AdeI | CACNNNGTG | 2 cut(s) | 270, 2408 |
| AfaI | GTAC | 8 cut(s) | 59, 1040, 1231, 1358, 1886, 2076, 2581, 3207 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 267, 3430 |
| AjnI | CCWGG | 6 cut(s) | 266, 970, 1528, 1717, 3004, 3264 |
| Alw21I | GWGCWC | 1 cut(s) | 201 |
| Alw26I | GTCTC | 4 cut(s) | 405, 491, 1268, 2315 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3271 |
| Ama87I | CYCGRG | 3 cut(s) | 220, 2534, 3020 |
| AoxI | GGCC | 7 cut(s) | 317, 365, 1162, 1720, 2227, 2473, 3262 |
| ApeKI | GCWGC | 5 cut(s) | 440, 860, 1971, 2112, 2751 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 209, 241, 2515, 2547 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 581, 1503 |
| AspA2I | CCTAGG | 1 cut(s) | 295 |
| AspS9I | GGNCC | 5 cut(s) | 365, 968, 1721, 2147, 2474 |
| AsuC2I | CCSGG | 3 cut(s) | 155, 364, 2477 |
| AsuHPI | GGTGA | 2 cut(s) | 113, 3272 |
| AsuII | TTCGAA | 1 cut(s) | 352 |
| AvaI | CYCGRG | 3 cut(s) | 220, 2534, 3020 |
| AvaII | GGWCC | 2 cut(s) | 968, 2147 |
| AvrII | CCTAGG | 1 cut(s) | 295 |
| BalI | TGGCCA | 1 cut(s) | 3264 |
| BamHI | GGATCC | 1 cut(s) | 299 |
| BanI | GGYRCC | 1 cut(s) | 2479 |
| BanII | GRGCYC | 2 cut(s) | 201, 2551 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2613, 2645 |
| BbsI | GAAGAC | 4 cut(s) | 15, 93, 2054, 2264 |
| Bbv12I | GWGCWC | 1 cut(s) | 201 |
| BbvI | GCAGC | 5 cut(s) | 427, 847, 1958, 2099, 2738 |
| BceAI | ACGGC | 1 cut(s) | 3069 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 3211, 3245 |
| BciT130I | CCWGG | 6 cut(s) | 268, 972, 1530, 1719, 3006, 3266 |
| BciVI | GTATCC | 2 cut(s) | 541, 3431 |
| BclI | TGATCA | 3 cut(s) | 1843, 1914, 3157 |
| BcnI | CCSGG | 3 cut(s) | 155, 364, 2477 |
| BcoDI | GTCTC | 4 cut(s) | 405, 491, 1268, 2315 |
| BfaI | CTAG | 9 cut(s) | 296, 597, 630, 1328, 1424, 2144, 2277, 2552, 3321 |
| BfmI | CTRYAG | 5 cut(s) | 192, 2287, 2608, 2957, 3042 |
| BfuAI | ACCTGC | 1 cut(s) | 2212 |
| BfuI | GTATCC | 2 cut(s) | 541, 3431 |
| BglII | AGATCT | 1 cut(s) | 3451 |
| BisI | GCNGC | 7 cut(s) | 441, 861, 1936, 1972, 2113, 2752, 2920 |
| BlnI | CCTAGG | 1 cut(s) | 295 |
| BlpI | GCTNAGC | 1 cut(s) | 2855 |
| BlsI | GCNGC | 7 cut(s) | 442, 862, 1937, 1973, 2114, 2753, 2921 |
| Bme1390I | CCNGG | 9 cut(s) | 155, 268, 364, 972, 1530, 1719, 2477, 3006, 3266 |
| Bme18I | GGWCC | 2 cut(s) | 968, 2147 |
| BmeT110I | CYCGRG | 3 cut(s) | 220, 2534, 3020 |
| BmgT120I | GGNCC | 5 cut(s) | 365, 968, 1721, 2147, 2474 |
| BmiI | GGNNCC | 5 cut(s) | 301, 1541, 1723, 2481, 2965 |
| BmrFI | CCNGG | 9 cut(s) | 155, 268, 364, 972, 1530, 1719, 2477, 3006, 3266 |
| BmsI | GCATC | 8 cut(s) | 553, 835, 1207, 1458, 2216, 2292, 2315, 3308 |
| BpiI | GAAGAC | 4 cut(s) | 15, 93, 2054, 2264 |
| BpmI | CTGGAG | 4 cut(s) | 454, 1031, 1179, 1701 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2855 |
| Bpu14I | TTCGAA | 1 cut(s) | 352 |
| BpuEI | CTTGAG | 4 cut(s) | 1265, 1765, 1970, 2101 |
| BpuMI | CCSGG | 3 cut(s) | 155, 364, 2477 |
| BsaBI | GATNNNNATC | 1 cut(s) | 918 |
| BsaJI | CCNNGG | 4 cut(s) | 163, 295, 971, 2489 |
| BsaWI | WCCGGW | 1 cut(s) | 1801 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 267, 3430 |
| Bse1I | ACTGG | 2 cut(s) | 1386, 1594 |
| Bse3DI | GCAATG | 1 cut(s) | 466 |
| Bse8I | GATNNNNATC | 1 cut(s) | 918 |
| BseBI | CCWGG | 6 cut(s) | 268, 972, 1530, 1719, 3006, 3266 |
| BseDI | CCNNGG | 4 cut(s) | 163, 295, 971, 2489 |
| BseJI | GATNNNNATC | 1 cut(s) | 918 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 267, 3430 |
| BseMI | GCAATG | 1 cut(s) | 466 |
| BseMII | CTCAG | 4 cut(s) | 492, 540, 2846, 3643 |
| BseNI | ACTGG | 2 cut(s) | 1386, 1594 |
| BseXI | GCAGC | 5 cut(s) | 427, 847, 1958, 2099, 2738 |
| BsgI | GTGCAG | 2 cut(s) | 1957, 2385 |
| Bsh1236I | CGCG | 2 cut(s) | 777, 2463 |
| BshFI | GGCC | 7 cut(s) | 319, 367, 1164, 1722, 2229, 2475, 3264 |
| BshNI | GGYRCC | 1 cut(s) | 2479 |
| BsiHKAI | GWGCWC | 1 cut(s) | 201 |
| BsiHKCI | CYCGRG | 3 cut(s) | 220, 2534, 3020 |
| BsiSI | CCGG | 4 cut(s) | 154, 363, 1802, 2477 |
| BslFI | GGGAC | 3 cut(s) | 324, 2197, 2517 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 267, 3430 |
| BsmAI | GTCTC | 4 cut(s) | 405, 491, 1268, 2315 |
| BsmBI | CGTCTC | 1 cut(s) | 1268 |
| BsmFI | GGGAC | 3 cut(s) | 324, 2197, 2517 |
| BsmI | GAATGC | 3 cut(s) | 1938, 2375, 2494 |
| BsnI | GGCC | 7 cut(s) | 319, 367, 1164, 1722, 2229, 2475, 3264 |
| BsoBI | CYCGRG | 3 cut(s) | 220, 2534, 3020 |
| Bsp119I | TTCGAA | 1 cut(s) | 352 |
| Bsp1286I | GDGCHC | 2 cut(s) | 201, 2551 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2855 |
| Bsp19I | CCATGG | 1 cut(s) | 2489 |
| BspACI | CCGC | 6 cut(s) | 47, 777, 1787, 1935, 2463, 2919 |
| BspANI | GGCC | 7 cut(s) | 319, 367, 1164, 1722, 2229, 2475, 3264 |
| BspCNI | CTCAG | 4 cut(s) | 493, 539, 2847, 3642 |
| BspFNI | CGCG | 2 cut(s) | 777, 2463 |
| BspHI | TCATGA | 1 cut(s) | 1578 |
| BspLI | GGNNCC | 5 cut(s) | 301, 1541, 1723, 2481, 2965 |
| BspMAI | CTGCAG | 3 cut(s) | 196, 2612, 3046 |
| BspMI | ACCTGC | 1 cut(s) | 2212 |
| BspQI | GCTCTTC | 2 cut(s) | 1077, 1518 |
| BspT104I | TTCGAA | 1 cut(s) | 352 |
| BspT107I | GGYRCC | 1 cut(s) | 2479 |
| BsrDI | GCAATG | 1 cut(s) | 466 |
| BsrI | ACTGG | 2 cut(s) | 1386, 1594 |
| BssECI | CCNNGG | 4 cut(s) | 163, 295, 971, 2489 |
| BssT1I | CCWWGG | 3 cut(s) | 163, 295, 2489 |
| Bst2UI | CCWGG | 6 cut(s) | 268, 972, 1530, 1719, 3006, 3266 |
| Bst4CI | ACNGT | 7 cut(s) | 129, 854, 1038, 1134, 2584, 2803, 2912 |
| Bst6I | CTCTTC | 2 cut(s) | 1077, 1518 |
| BstBI | TTCGAA | 1 cut(s) | 352 |
| BstC8I | GCNNGC | 2 cut(s) | 1339, 2707 |
| BstDSI | CCRYGG | 1 cut(s) | 2489 |
| BstFNI | CGCG | 2 cut(s) | 777, 2463 |
| BstMAI | GTCTC | 4 cut(s) | 405, 491, 1268, 2315 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 2289, 2725 |
| BstNI | CCWGG | 6 cut(s) | 268, 972, 1530, 1719, 3006, 3266 |
| BstNSI | RCATGY | 2 cut(s) | 1341, 3183 |
| BstSCI | CCNGG | 9 cut(s) | 153, 266, 362, 970, 1528, 1717, 2475, 3004, 3264 |
| BstSFI | CTRYAG | 5 cut(s) | 192, 2287, 2608, 2957, 3042 |
| BstUI | CGCG | 2 cut(s) | 777, 2463 |
| BstV1I | GCAGC | 5 cut(s) | 427, 847, 1958, 2099, 2738 |
| BstV2I | GAAGAC | 4 cut(s) | 15, 93, 2054, 2264 |
| BstX2I | RGATCY | 3 cut(s) | 299, 1190, 3451 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2490 |
| BstYI | RGATCY | 3 cut(s) | 299, 1190, 3451 |
| BsuI | GTATCC | 2 cut(s) | 541, 3431 |
| BsuRI | GGCC | 7 cut(s) | 319, 367, 1164, 1722, 2229, 2475, 3264 |
| BtgI | CCRYGG | 1 cut(s) | 2489 |
| BtsIMutI | CAGTG | 1 cut(s) | 859 |
| BveI | ACCTGC | 1 cut(s) | 2212 |
| Cac8I | GCNNGC | 2 cut(s) | 1339, 2707 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3271 |
| CciI | TCATGA | 1 cut(s) | 1578 |
| Cfr13I | GGNCC | 5 cut(s) | 365, 968, 1721, 2147, 2474 |
| CseI | GACGC | 3 cut(s) | 1285, 1817, 2258 |
| CsiI | ACCWGGT | 1 cut(s) | 266 |
| Csp6I | GTAC | 8 cut(s) | 58, 1039, 1230, 1357, 1885, 2075, 2580, 3206 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 113, 148 |
| CviQI | GTAC | 8 cut(s) | 58, 1039, 1230, 1357, 1885, 2075, 2580, 3206 |
| DraI | TTTAAA | 2 cut(s) | 819, 2568 |
| DraIII | CACNNNGTG | 2 cut(s) | 270, 2408 |
| EaeI | YGGCCR | 1 cut(s) | 3262 |
| Eam1104I | CTCTTC | 2 cut(s) | 1077, 1518 |
| EarI | CTCTTC | 2 cut(s) | 1077, 1518 |
| Ecl136II | GAGCTC | 1 cut(s) | 199 |
| Eco130I | CCWWGG | 3 cut(s) | 163, 295, 2489 |
| Eco147I | AGGCCT | 1 cut(s) | 1164 |
| Eco24I | GRGCYC | 2 cut(s) | 201, 2551 |
| Eco47I | GGWCC | 2 cut(s) | 968, 2147 |
| Eco53kI | GAGCTC | 1 cut(s) | 199 |
| Eco57I | CTGAAG | 7 cut(s) | 1058, 1650, 2144, 2396, 2747, 3150, 3428 |
| Eco88I | CYCGRG | 3 cut(s) | 220, 2534, 3020 |
| EcoICRI | GAGCTC | 1 cut(s) | 199 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1721 |
| EcoRII | CCWGG | 6 cut(s) | 266, 970, 1528, 1717, 3004, 3264 |
| EcoT14I | CCWWGG | 3 cut(s) | 163, 295, 2489 |
| EcoT22I | ATGCAT | 3 cut(s) | 1473, 3181, 3301 |
| EcoT38I | GRGCYC | 2 cut(s) | 201, 2551 |
| ErhI | CCWWGG | 3 cut(s) | 163, 295, 2489 |
| Esp3I | CGTCTC | 1 cut(s) | 1268 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 863, 895, 1550, 1582, 2717, 2749 |
| FaqI | GGGAC | 3 cut(s) | 324, 2197, 2517 |
| FauI | CCCGC | 1 cut(s) | 1794 |
| FauNDI | CATATG | 1 cut(s) | 1347 |
| FbaI | TGATCA | 3 cut(s) | 1843, 1914, 3157 |
| FblI | GTMKAC | 2 cut(s) | 522, 3221 |
| Fnu4HI | GCNGC | 7 cut(s) | 441, 861, 1936, 1972, 2113, 2752, 2920 |
| FriOI | GRGCYC | 2 cut(s) | 201, 2551 |
| Fsp4HI | GCNGC | 7 cut(s) | 441, 861, 1936, 1972, 2113, 2752, 2920 |
| FspBI | CTAG | 9 cut(s) | 296, 597, 630, 1328, 1424, 2144, 2277, 2552, 3321 |
| GluI | GCNGC | 7 cut(s) | 441, 861, 1936, 1972, 2113, 2752, 2920 |
| GsuI | CTGGAG | 4 cut(s) | 454, 1031, 1179, 1701 |
| HaeIII | GGCC | 7 cut(s) | 319, 367, 1164, 1722, 2229, 2475, 3264 |
| HapII | CCGG | 4 cut(s) | 154, 363, 1802, 2477 |
| HgaI | GACGC | 3 cut(s) | 1285, 1817, 2258 |
| HincII | GTYRAC | 3 cut(s) | 1535, 2908, 3222 |
| HindII | GTYRAC | 3 cut(s) | 1535, 2908, 3222 |
| HindIII | AAGCTT | 4 cut(s) | 2018, 2353, 2726, 2759 |
| HpaII | CCGG | 4 cut(s) | 154, 363, 1802, 2477 |
| HphI | GGTGA | 2 cut(s) | 113, 3272 |
| Hpy166II | GTNNAC | 7 cut(s) | 523, 1535, 2580, 2908, 3030, 3077, 3222 |
| Hpy8I | GTNNAC | 7 cut(s) | 523, 1535, 2580, 2908, 3030, 3077, 3222 |
| HpyCH4III | ACNGT | 7 cut(s) | 129, 854, 1038, 1134, 2584, 2803, 2912 |
| HpyCH4IV | ACGT | 3 cut(s) | 828, 1006, 1232 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 2289, 2725 |
| HpySE526I | ACGT | 3 cut(s) | 828, 1006, 1232 |
| Ksp22I | TGATCA | 3 cut(s) | 1843, 1914, 3157 |
| LguI | GCTCTTC | 2 cut(s) | 1077, 1518 |
| LmnI | GCTCC | 8 cut(s) | 857, 975, 1050, 1363, 1539, 1695, 2380, 2624 |
| Lsp1109I | GCAGC | 5 cut(s) | 427, 847, 1958, 2099, 2738 |
| LweI | GCATC | 8 cut(s) | 553, 835, 1207, 1458, 2216, 2292, 2315, 3308 |
| MabI | ACCWGGT | 1 cut(s) | 266 |
| MaeI | CTAG | 9 cut(s) | 296, 597, 630, 1328, 1424, 2144, 2277, 2552, 3321 |
| MaeII | ACGT | 3 cut(s) | 828, 1006, 1232 |
| MfeI | CAATTG | 2 cut(s) | 1602, 3570 |
| MflI | RGATCY | 3 cut(s) | 299, 1190, 3451 |
| MhlI | GDGCHC | 2 cut(s) | 201, 2551 |
| MlsI | TGGCCA | 1 cut(s) | 3264 |
| MluNI | TGGCCA | 1 cut(s) | 3264 |
| MlyI | GAGTC | 3 cut(s) | 212, 518, 2068 |
| MmeI | TCCRAC | 2 cut(s) | 736, 1215 |
| Mox20I | TGGCCA | 1 cut(s) | 3264 |
| Mph1103I | ATGCAT | 3 cut(s) | 1473, 3181, 3301 |
| MroXI | GAANNNNTTC | 2 cut(s) | 581, 1503 |
| MscI | TGGCCA | 1 cut(s) | 3264 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1424, 3180, 3582 |
| Msp20I | TGGCCA | 1 cut(s) | 3264 |
| MspA1I | CMGCKG | 1 cut(s) | 1935 |
| MspI | CCGG | 4 cut(s) | 154, 363, 1802, 2477 |
| MspR9I | CCNGG | 9 cut(s) | 155, 268, 364, 972, 1530, 1719, 2477, 3006, 3266 |
| MunI | CAATTG | 2 cut(s) | 1602, 3570 |
| Mva1269I | GAATGC | 3 cut(s) | 1938, 2375, 2494 |
| MvaI | CCWGG | 6 cut(s) | 268, 972, 1530, 1719, 3006, 3266 |
| MvnI | CGCG | 2 cut(s) | 777, 2463 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 2289, 2725 |
| NciI | CCSGG | 3 cut(s) | 155, 364, 2477 |
| NcoI | CCATGG | 1 cut(s) | 2489 |
| NdeI | CATATG | 1 cut(s) | 1347 |
| NlaIV | GGNNCC | 5 cut(s) | 301, 1541, 1723, 2481, 2965 |
| NmuCI | GTSAC | 1 cut(s) | 3624 |
| NsiI | ATGCAT | 3 cut(s) | 1473, 3181, 3301 |
| NspI | RCATGY | 2 cut(s) | 1341, 3183 |
| NspV | TTCGAA | 1 cut(s) | 352 |
| PaeI | GCATGC | 1 cut(s) | 1341 |
| PaeR7I | CTCGAG | 1 cut(s) | 220 |
| PagI | TCATGA | 1 cut(s) | 1578 |
| PaqCI | CACCTGC | 1 cut(s) | 2212 |
| PceI | AGGCCT | 1 cut(s) | 1164 |
| PciSI | GCTCTTC | 2 cut(s) | 1077, 1518 |
| PctI | GAATGC | 3 cut(s) | 1938, 2375, 2494 |
| PdmI | GAANNNNTTC | 2 cut(s) | 581, 1503 |
| PfoI | TCCNGGA | 2 cut(s) | 153, 3004 |
| PkrI | GCNGC | 7 cut(s) | 442, 862, 1937, 1973, 2114, 2753, 2921 |
| PleI | GAGTC | 3 cut(s) | 212, 518, 2067 |
| PpsI | GAGTC | 3 cut(s) | 212, 518, 2067 |
| Psp124BI | GAGCTC | 1 cut(s) | 201 |
| Psp1406I | AACGTT | 1 cut(s) | 828 |
| Psp6I | CCWGG | 6 cut(s) | 266, 970, 1528, 1717, 3004, 3264 |
| PspGI | CCWGG | 6 cut(s) | 266, 970, 1528, 1717, 3004, 3264 |
| PspN4I | GGNNCC | 5 cut(s) | 301, 1541, 1723, 2481, 2965 |
| PspPI | GGNCC | 5 cut(s) | 365, 968, 1721, 2147, 2474 |
| PspXI | VCTCGAGB | 1 cut(s) | 220 |
| PstI | CTGCAG | 3 cut(s) | 196, 2612, 3046 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3271 |
| PsuI | RGATCY | 3 cut(s) | 299, 1190, 3451 |
| RsaI | GTAC | 8 cut(s) | 59, 1040, 1231, 1358, 1886, 2076, 2581, 3207 |
| RsaNI | GTAC | 8 cut(s) | 58, 1039, 1230, 1357, 1885, 2075, 2580, 3206 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1424, 3180, 3582 |
| SacI | GAGCTC | 1 cut(s) | 201 |
| SalI | GTCGAC | 1 cut(s) | 3220 |
| SapI | GCTCTTC | 2 cut(s) | 1077, 1518 |
| SatI | GCNGC | 7 cut(s) | 441, 861, 1936, 1972, 2113, 2752, 2920 |
| Sau96I | GGNCC | 5 cut(s) | 365, 968, 1721, 2147, 2474 |
| SchI | GAGTC | 3 cut(s) | 212, 518, 2068 |
| ScrFI | CCNGG | 9 cut(s) | 155, 268, 364, 972, 1530, 1719, 2477, 3006, 3266 |
| SduI | GDGCHC | 2 cut(s) | 201, 2551 |
| SexAI | ACCWGGT | 1 cut(s) | 266 |
| SfaNI | GCATC | 8 cut(s) | 553, 835, 1207, 1458, 2216, 2292, 2315, 3308 |
| SfcI | CTRYAG | 5 cut(s) | 192, 2287, 2608, 2957, 3042 |
| Sfr274I | CTCGAG | 1 cut(s) | 220 |
| SfuI | TTCGAA | 1 cut(s) | 352 |
| SinI | GGWCC | 2 cut(s) | 968, 2147 |
| SlaI | CTCGAG | 1 cut(s) | 220 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1424, 3180, 3582 |
| SmlI | CTYRAG | 5 cut(s) | 220, 1280, 1744, 1949, 2116 |
| SmoI | CTYRAG | 5 cut(s) | 220, 1280, 1744, 1949, 2116 |
| SphI | GCATGC | 1 cut(s) | 1341 |
| SseBI | AGGCCT | 1 cut(s) | 1164 |
| SsiI | CCGC | 6 cut(s) | 47, 777, 1787, 1935, 2463, 2919 |
| SspI | AATATT | 3 cut(s) | 1154, 2835, 2995 |
| SspMI | CTAG | 9 cut(s) | 296, 597, 630, 1328, 1424, 2144, 2277, 2552, 3321 |
| SstI | GAGCTC | 1 cut(s) | 201 |
| StuI | AGGCCT | 1 cut(s) | 1164 |
| StyD4I | CCNGG | 9 cut(s) | 153, 266, 362, 970, 1528, 1717, 2475, 3004, 3264 |
| StyI | CCWWGG | 3 cut(s) | 163, 295, 2489 |
| TaaI | ACNGT | 7 cut(s) | 129, 854, 1038, 1134, 2584, 2803, 2912 |
| TaiI | ACGT | 3 cut(s) | 831, 1009, 1235 |
| TaqI | TCGA | 6 cut(s) | 221, 352, 569, 1017, 3139, 3221 |
| TatI | WGTACW | 4 cut(s) | 1356, 1884, 2579, 3205 |
| TauI | GCSGC | 2 cut(s) | 1938, 2922 |
| TscAI | CASTG | 1 cut(s) | 859 |
| TseFI | GTSAC | 1 cut(s) | 3624 |
| TseI | GCWGC | 5 cut(s) | 440, 860, 1971, 2112, 2751 |
| Tsp45I | GTSAC | 1 cut(s) | 3624 |
| TspGWI | ACGGA | 3 cut(s) | 1552, 1829, 3413 |
| TspRI | CASTG | 1 cut(s) | 859 |
| VpaK11BI | GGWCC | 2 cut(s) | 968, 2147 |
| XbaI | TCTAGA | 2 cut(s) | 596, 1327 |
| XceI | RCATGY | 2 cut(s) | 1341, 3183 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 271 |
| XhoI | CTCGAG | 1 cut(s) | 220 |
| XmaJI | CCTAGG | 1 cut(s) | 295 |
| XmiI | GTMKAC | 2 cut(s) | 522, 3221 |
| XmnI | GAANNNNTTC | 2 cut(s) | 581, 1503 |
| XspI | CTAG | 9 cut(s) | 296, 597, 630, 1328, 1424, 2144, 2277, 2552, 3321 |
| Zsp2I | ATGCAT | 3 cut(s) | 1473, 3181, 3301 |