TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 9 - 92 | 8.9e-10 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 160 - 230 | 1.5e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 395 - 501 | 7e-13 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 420 - 506 | 7.4e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 488 - 550 | 7.3e-07 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 576 - 683 | 1.2e-10 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 587 - 642 | 2.2e-08 | Leucine rich repeat |
| C-JID | PF20160 | 701 - 841 | 1.4e-18 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 738 |
| AccB1I | GGYRCC | 1 cut(s) | 1923 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 661 |
| AciI | CCGC | 6 cut(s) | 679, 1927, 2240, 2490, 2563, 2645 |
| AclWI | GGATC | 1 cut(s) | 2352 |
| AcoI | YGGCCR | 1 cut(s) | 1885 |
| AcsI | RAATTY | 5 cut(s) | 110, 438, 2112, 2288, 2469 |
| AcuI | CTGAAG | 3 cut(s) | 306, 750, 1919 |
| AcyI | GRCGYC | 1 cut(s) | 735 |
| AfaI | GTAC | 5 cut(s) | 357, 1150, 1251, 2126, 2608 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 42, 661, 2245 |
| AflII | CTTAAG | 1 cut(s) | 1301 |
| AflIII | ACRYGT | 2 cut(s) | 742, 999 |
| AjnI | CCWGG | 5 cut(s) | 700, 1171, 1453, 2101, 2170 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1620, 1652 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 576, 608 |
| Alw26I | GTCTC | 1 cut(s) | 341 |
| AlwI | GGATC | 1 cut(s) | 2352 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1983 |
| Ama87I | CYCGRG | 2 cut(s) | 2293, 2669 |
| AoxI | GGCC | 1 cut(s) | 1885 |
| ApeKI | GCWGC | 1 cut(s) | 2594 |
| ApoI | RAATTY | 5 cut(s) | 110, 438, 2112, 2288, 2469 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1696, 1728 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 266, 294, 494, 1023, 1908 |
| AspLEI | GCGC | 1 cut(s) | 711 |
| AspS9I | GGNCC | 4 cut(s) | 936, 2297, 2494, 2687 |
| AsuC2I | CCSGG | 2 cut(s) | 683, 940 |
| AsuHPI | GGTGA | 3 cut(s) | 829, 835, 1650 |
| AsuII | TTCGAA | 1 cut(s) | 1702 |
| AvaI | CYCGRG | 2 cut(s) | 2293, 2669 |
| AvaII | GGWCC | 4 cut(s) | 936, 2297, 2494, 2687 |
| BaeGI | GKGCMC | 2 cut(s) | 1596, 2370 |
| BanI | GGYRCC | 1 cut(s) | 1923 |
| BanII | GRGCYC | 1 cut(s) | 365 |
| BbsI | GAAGAC | 4 cut(s) | 637, 738, 899, 1442 |
| BbvI | GCAGC | 1 cut(s) | 2606 |
| BccI | CCATC | 2 cut(s) | 461, 970 |
| BceAI | ACGGC | 1 cut(s) | 2198 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1334, 1368 |
| BciT130I | CCWGG | 5 cut(s) | 702, 1173, 1455, 2103, 2172 |
| BciVI | GTATCC | 2 cut(s) | 954, 2178 |
| BclI | TGATCA | 2 cut(s) | 555, 2377 |
| BcnI | CCSGG | 2 cut(s) | 683, 940 |
| BcoDI | GTCTC | 1 cut(s) | 341 |
| BfmI | CTRYAG | 2 cut(s) | 1722, 2157 |
| BfrI | CTTAAG | 1 cut(s) | 1301 |
| BfuI | GTATCC | 2 cut(s) | 954, 2178 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 706 |
| BglII | AGATCT | 2 cut(s) | 382, 1486 |
| BisI | GCNGC | 2 cut(s) | 1927, 2595 |
| BlsI | GCNGC | 2 cut(s) | 1928, 2596 |
| BmcAI | AGTACT | 2 cut(s) | 357, 2608 |
| Bme1390I | CCNGG | 7 cut(s) | 683, 702, 940, 1173, 1455, 2103, 2172 |
| Bme18I | GGWCC | 4 cut(s) | 936, 2297, 2494, 2687 |
| BmeT110I | CYCGRG | 2 cut(s) | 2293, 2669 |
| BmgT120I | GGNCC | 4 cut(s) | 936, 2297, 2494, 2687 |
| BmiI | GGNNCC | 6 cut(s) | 31, 884, 1925, 2298, 2299, 2495 |
| BmrFI | CCNGG | 7 cut(s) | 683, 702, 940, 1173, 1455, 2103, 2172 |
| BmrI | ACTGGG | 2 cut(s) | 368, 1800 |
| BmsI | GCATC | 6 cut(s) | 630, 1342, 1808, 2581, 2606, 2656 |
| BmuI | ACTGGG | 2 cut(s) | 368, 1800 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1323 |
| BpiI | GAAGAC | 4 cut(s) | 637, 738, 899, 1442 |
| BpmI | CTGGAG | 1 cut(s) | 2124 |
| Bpu14I | TTCGAA | 1 cut(s) | 1702 |
| BpuEI | CTTGAG | 3 cut(s) | 1145, 1444, 2543 |
| BpuMI | CCSGG | 2 cut(s) | 683, 940 |
| BsaAI | YACGTR | 1 cut(s) | 1253 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1491 |
| BsaHI | GRCGYC | 1 cut(s) | 735 |
| BsaI | GGTCTC | 1 cut(s) | 341 |
| BsaJI | CCNNGG | 5 cut(s) | 1006, 1171, 1172, 1636, 2243 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 801, 831 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 42, 661, 2245 |
| Bse1I | ACTGG | 3 cut(s) | 363, 766, 1806 |
| Bse3DI | GCAATG | 1 cut(s) | 1940 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1491 |
| BseBI | CCWGG | 5 cut(s) | 702, 1173, 1455, 2103, 2172 |
| BseDI | CCNNGG | 5 cut(s) | 1006, 1171, 1172, 1636, 2243 |
| BseGI | GGATG | 5 cut(s) | 645, 1649, 1823, 2467, 2647 |
| BseJI | GATNNNNATC | 1 cut(s) | 1491 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 42, 661, 2245 |
| BseMI | GCAATG | 1 cut(s) | 1940 |
| BseMII | CTCAG | 4 cut(s) | 792, 969, 1084, 1866 |
| BseNI | ACTGG | 3 cut(s) | 363, 766, 1806 |
| BseRI | GAGGAG | 1 cut(s) | 2537 |
| BseSI | GKGCMC | 2 cut(s) | 1596, 2370 |
| BseXI | GCAGC | 1 cut(s) | 2606 |
| BsgI | GTGCAG | 1 cut(s) | 2703 |
| BshFI | GGCC | 1 cut(s) | 1887 |
| BshNI | GGYRCC | 1 cut(s) | 1923 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2293, 2669 |
| BsiSI | CCGG | 4 cut(s) | 259, 682, 939, 1946 |
| BslFI | GGGAC | 1 cut(s) | 2283 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 42, 661, 2245 |
| BsmAI | GTCTC | 1 cut(s) | 341 |
| BsmFI | GGGAC | 1 cut(s) | 2283 |
| BsmI | GAATGC | 2 cut(s) | 266, 832 |
| BsnI | GGCC | 1 cut(s) | 1887 |
| Bso31I | GGTCTC | 1 cut(s) | 341 |
| BsoBI | CYCGRG | 2 cut(s) | 2293, 2669 |
| Bsp119I | TTCGAA | 1 cut(s) | 1702 |
| Bsp1286I | GDGCHC | 3 cut(s) | 365, 1596, 2370 |
| Bsp1407I | TGTACA | 1 cut(s) | 1148 |
| Bsp143I | GATC | 7 cut(s) | 186, 382, 535, 555, 1486, 2344, 2377 |
| Bsp19I | CCATGG | 1 cut(s) | 1006 |
| BspACI | CCGC | 6 cut(s) | 679, 1927, 2240, 2490, 2563, 2645 |
| BspANI | GGCC | 1 cut(s) | 1887 |
| BspCNI | CTCAG | 4 cut(s) | 793, 970, 1083, 1867 |
| BspHI | TCATGA | 1 cut(s) | 22 |
| BspLI | GGNNCC | 6 cut(s) | 31, 884, 1925, 2298, 2299, 2495 |
| BspMAI | CTGCAG | 1 cut(s) | 1726 |
| BspPI | GGATC | 1 cut(s) | 2352 |
| BspT104I | TTCGAA | 1 cut(s) | 1702 |
| BspT107I | GGYRCC | 1 cut(s) | 1923 |
| BspTI | CTTAAG | 1 cut(s) | 1301 |
| BspTNI | GGTCTC | 1 cut(s) | 341 |
| BsrDI | GCAATG | 1 cut(s) | 1940 |
| BsrGI | TGTACA | 1 cut(s) | 1148 |
| BsrI | ACTGG | 3 cut(s) | 363, 766, 1806 |
| BssECI | CCNNGG | 5 cut(s) | 1006, 1171, 1172, 1636, 2243 |
| BssMI | GATC | 7 cut(s) | 186, 382, 535, 555, 1486, 2344, 2377 |
| BssNI | GRCGYC | 1 cut(s) | 735 |
| BssT1I | CCWWGG | 3 cut(s) | 1006, 1636, 2243 |
| Bst2UI | CCWGG | 5 cut(s) | 702, 1173, 1455, 2103, 2172 |
| Bst4CI | ACNGT | 9 cut(s) | 401, 424, 619, 1063, 1201, 1656, 2039, 2158, 2681 |
| Bst6I | CTCTTC | 3 cut(s) | 249, 373, 477 |
| BstACI | GRCGYC | 1 cut(s) | 735 |
| BstAFI | CTTAAG | 1 cut(s) | 1301 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 649, 2618 |
| BstAUI | TGTACA | 1 cut(s) | 1148 |
| BstBAI | YACGTR | 1 cut(s) | 1253 |
| BstBI | TTCGAA | 1 cut(s) | 1702 |
| BstC8I | GCNNGC | 5 cut(s) | 707, 1243, 1397, 1931, 2206 |
| BstDEI | CTNAG | 6 cut(s) | 386, 801, 978, 1070, 1778, 1875 |
| BstDSI | CCRYGG | 1 cut(s) | 1006 |
| BstEII | GGTNACC | 2 cut(s) | 278, 1656 |
| BstF5I | GGATG | 5 cut(s) | 645, 1649, 1823, 2467, 2647 |
| BstHHI | GCGC | 1 cut(s) | 711 |
| BstKTI | GATC | 7 cut(s) | 189, 385, 538, 558, 1489, 2347, 2380 |
| BstMAI | GTCTC | 1 cut(s) | 341 |
| BstMBI | GATC | 7 cut(s) | 186, 382, 535, 555, 1486, 2344, 2377 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 649, 706, 1011, 1392, 2210, 2618 |
| BstNI | CCWGG | 5 cut(s) | 702, 1173, 1455, 2103, 2172 |
| BstNSI | RCATGY | 3 cut(s) | 746, 1003, 1399 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1323 |
| BstPI | GGTNACC | 2 cut(s) | 278, 1656 |
| BstSCI | CCNGG | 7 cut(s) | 681, 700, 938, 1171, 1453, 2101, 2170 |
| BstSFI | CTRYAG | 2 cut(s) | 1722, 2157 |
| BstSLI | GKGCMC | 2 cut(s) | 1596, 2370 |
| BstV1I | GCAGC | 1 cut(s) | 2606 |
| BstV2I | GAAGAC | 4 cut(s) | 637, 738, 899, 1442 |
| BstX2I | RGATCY | 2 cut(s) | 382, 1486 |
| BstYI | RGATCY | 2 cut(s) | 382, 1486 |
| BsuI | GTATCC | 2 cut(s) | 954, 2178 |
| BsuRI | GGCC | 1 cut(s) | 1887 |
| BtgI | CCRYGG | 1 cut(s) | 1006 |
| BtsCI | GGATG | 5 cut(s) | 645, 1649, 1823, 2467, 2647 |
| BtsI | GCAGTG | 2 cut(s) | 1252, 1465 |
| BtsIMutI | CAGTG | 4 cut(s) | 406, 1252, 1465, 1813 |
| Cac8I | GCNNGC | 5 cut(s) | 707, 1243, 1397, 1931, 2206 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1983 |
| CciI | TCATGA | 1 cut(s) | 22 |
| CfoI | GCGC | 1 cut(s) | 711 |
| Cfr13I | GGNCC | 4 cut(s) | 936, 2297, 2494, 2687 |
| Csp6I | GTAC | 5 cut(s) | 356, 1149, 1250, 2125, 2607 |
| CviQI | GTAC | 5 cut(s) | 356, 1149, 1250, 2125, 2607 |
| DdeI | CTNAG | 6 cut(s) | 386, 801, 978, 1070, 1778, 1875 |
| DpnI | GATC | 7 cut(s) | 188, 384, 537, 557, 1488, 2346, 2379 |
| DpnII | GATC | 7 cut(s) | 186, 382, 535, 555, 1486, 2344, 2377 |
| DraI | TTTAAA | 5 cut(s) | 108, 1108, 2392, 2440, 2662 |
| EaeI | YGGCCR | 1 cut(s) | 1885 |
| Eam1104I | CTCTTC | 3 cut(s) | 249, 373, 477 |
| EarI | CTCTTC | 3 cut(s) | 249, 373, 477 |
| EciI | GGCGGA | 1 cut(s) | 668 |
| Eco130I | CCWWGG | 3 cut(s) | 1006, 1636, 2243 |
| Eco24I | GRGCYC | 1 cut(s) | 365 |
| Eco31I | GGTCTC | 1 cut(s) | 341 |
| Eco32I | GATATC | 1 cut(s) | 2410 |
| Eco47I | GGWCC | 4 cut(s) | 936, 2297, 2494, 2687 |
| Eco57I | CTGAAG | 3 cut(s) | 306, 750, 1919 |
| Eco88I | CYCGRG | 2 cut(s) | 2293, 2669 |
| Eco91I | GGTNACC | 2 cut(s) | 278, 1656 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2297, 2687 |
| EcoO65I | GGTNACC | 2 cut(s) | 278, 1656 |
| EcoRI | GAATTC | 1 cut(s) | 2288 |
| EcoRII | CCWGG | 5 cut(s) | 700, 1171, 1453, 2101, 2170 |
| EcoRV | GATATC | 1 cut(s) | 2410 |
| EcoT14I | CCWWGG | 3 cut(s) | 1006, 1636, 2243 |
| EcoT38I | GRGCYC | 1 cut(s) | 365 |
| ErhI | CCWWGG | 3 cut(s) | 1006, 1636, 2243 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 282, 314, 2552, 2584 |
| FaqI | GGGAC | 1 cut(s) | 2283 |
| FauI | CCCGC | 3 cut(s) | 2247, 2483, 2556 |
| FbaI | TGATCA | 2 cut(s) | 555, 2377 |
| Fnu4HI | GCNGC | 2 cut(s) | 1927, 2595 |
| FokI | GGATG | 5 cut(s) | 652, 1656, 1830, 2474, 2634 |
| FriOI | GRGCYC | 1 cut(s) | 365 |
| Fsp4HI | GCNGC | 2 cut(s) | 1927, 2595 |
| GlaI | GCGC | 1 cut(s) | 710 |
| GluI | GCNGC | 2 cut(s) | 1927, 2595 |
| GsuI | CTGGAG | 1 cut(s) | 2124 |
| HaeIII | GGCC | 1 cut(s) | 1887 |
| HapII | CCGG | 4 cut(s) | 259, 682, 939, 1946 |
| HhaI | GCGC | 1 cut(s) | 711 |
| Hin1I | GRCGYC | 1 cut(s) | 735 |
| Hin6I | GCGC | 1 cut(s) | 709 |
| HinP1I | GCGC | 1 cut(s) | 709 |
| HincII | GTYRAC | 5 cut(s) | 1093, 1168, 2035, 2274, 2333 |
| HindII | GTYRAC | 5 cut(s) | 1093, 1168, 2035, 2274, 2333 |
| HindIII | AAGCTT | 3 cut(s) | 1511, 1559, 1931 |
| HpaI | GTTAAC | 1 cut(s) | 2035 |
| HpaII | CCGG | 4 cut(s) | 259, 682, 939, 1946 |
| HphI | GGTGA | 3 cut(s) | 829, 835, 1650 |
| Hpy188I | TCNGA | 5 cut(s) | 16, 730, 967, 1798, 1938 |
| HpyAV | CCTTC | 6 cut(s) | 20, 29, 208, 773, 1136, 1397 |
| HpyCH4III | ACNGT | 9 cut(s) | 401, 424, 619, 1063, 1201, 1656, 2039, 2158, 2681 |
| HpyCH4IV | ACGT | 2 cut(s) | 735, 1252 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 649, 706, 1011, 1392, 2210, 2618 |
| HpyF3I | CTNAG | 6 cut(s) | 386, 801, 978, 1070, 1778, 1875 |
| HpySE526I | ACGT | 2 cut(s) | 735, 1252 |
| Hsp92I | GRCGYC | 1 cut(s) | 735 |
| HspAI | GCGC | 1 cut(s) | 709 |
| KflI | GGGWCCC | 1 cut(s) | 2297 |
| Ksp22I | TGATCA | 2 cut(s) | 555, 2377 |
| KspAI | GTTAAC | 1 cut(s) | 2035 |
| Kzo9I | GATC | 7 cut(s) | 186, 382, 535, 555, 1486, 2344, 2377 |
| LmnI | GCTCC | 5 cut(s) | 29, 657, 1948, 2104, 2524 |
| Lsp1109I | GCAGC | 1 cut(s) | 2606 |
| LweI | GCATC | 6 cut(s) | 630, 1342, 1808, 2581, 2606, 2656 |
| MaeII | ACGT | 2 cut(s) | 735, 1252 |
| MaeIII | GTNAC | 9 cut(s) | 56, 278, 428, 541, 1656, 1712, 1781, 1996, 2693 |
| MalI | GATC | 7 cut(s) | 188, 384, 537, 557, 1488, 2346, 2379 |
| MboI | GATC | 7 cut(s) | 186, 382, 535, 555, 1486, 2344, 2377 |
| MfeI | CAATTG | 1 cut(s) | 2613 |
| MflI | RGATCY | 2 cut(s) | 382, 1486 |
| MhlI | GDGCHC | 3 cut(s) | 365, 1596, 2370 |
| MlyI | GAGTC | 3 cut(s) | 788, 2217, 2661 |
| MmeI | TCCRAC | 3 cut(s) | 1011, 1979, 2322 |
| MroXI | GAANNNNTTC | 5 cut(s) | 266, 294, 494, 1023, 1908 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2136, 2580 |
| MspCI | CTTAAG | 1 cut(s) | 1301 |
| MspI | CCGG | 4 cut(s) | 259, 682, 939, 1946 |
| MspR9I | CCNGG | 7 cut(s) | 683, 702, 940, 1173, 1455, 2103, 2172 |
| MunI | CAATTG | 1 cut(s) | 2613 |
| Mva1269I | GAATGC | 2 cut(s) | 266, 832 |
| MvaI | CCWGG | 5 cut(s) | 702, 1173, 1455, 2103, 2172 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 649, 706, 1011, 1392, 2210, 2618 |
| NciI | CCSGG | 2 cut(s) | 683, 940 |
| NcoI | CCATGG | 1 cut(s) | 1006 |
| NdeII | GATC | 7 cut(s) | 186, 382, 535, 555, 1486, 2344, 2377 |
| NlaIV | GGNNCC | 6 cut(s) | 31, 884, 1925, 2298, 2299, 2495 |
| NmuCI | GTSAC | 6 cut(s) | 56, 1656, 1712, 1781, 1996, 2693 |
| NspI | RCATGY | 3 cut(s) | 746, 1003, 1399 |
| NspV | TTCGAA | 1 cut(s) | 1702 |
| PaeI | GCATGC | 1 cut(s) | 1399 |
| PaeR7I | CTCGAG | 1 cut(s) | 2669 |
| PagI | TCATGA | 1 cut(s) | 22 |
| PasI | CCCWGGG | 1 cut(s) | 1172 |
| PciI | ACATGT | 2 cut(s) | 742, 999 |
| PctI | GAATGC | 2 cut(s) | 266, 832 |
| PdmI | GAANNNNTTC | 5 cut(s) | 266, 294, 494, 1023, 1908 |
| PfeI | GAWTC | 8 cut(s) | 239, 686, 925, 1084, 1225, 1774, 2199, 2427 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 661 |
| PfoI | TCCNGGA | 1 cut(s) | 2101 |
| PkrI | GCNGC | 2 cut(s) | 1928, 2596 |
| PleI | GAGTC | 3 cut(s) | 788, 2217, 2661 |
| PpsI | GAGTC | 3 cut(s) | 788, 2217, 2661 |
| Ppu21I | YACGTR | 1 cut(s) | 1253 |
| PpuMI | RGGWCCY | 2 cut(s) | 2297, 2687 |
| PscI | ACATGT | 2 cut(s) | 742, 999 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1323 |
| Psp5II | RGGWCCY | 2 cut(s) | 2297, 2687 |
| Psp6I | CCWGG | 5 cut(s) | 700, 1171, 1453, 2101, 2170 |
| PspEI | GGTNACC | 2 cut(s) | 278, 1656 |
| PspGI | CCWGG | 5 cut(s) | 700, 1171, 1453, 2101, 2170 |
| PspN4I | GGNNCC | 6 cut(s) | 31, 884, 1925, 2298, 2299, 2495 |
| PspPI | GGNCC | 4 cut(s) | 936, 2297, 2494, 2687 |
| PspPPI | RGGWCCY | 2 cut(s) | 2297, 2687 |
| PspXI | VCTCGAGB | 1 cut(s) | 2669 |
| PstI | CTGCAG | 1 cut(s) | 1726 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1983 |
| PsuI | RGATCY | 2 cut(s) | 382, 1486 |
| RsaI | GTAC | 5 cut(s) | 357, 1150, 1251, 2126, 2608 |
| RsaNI | GTAC | 5 cut(s) | 356, 1149, 1250, 2125, 2607 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2136, 2580 |
| SatI | GCNGC | 2 cut(s) | 1927, 2595 |
| Sau3AI | GATC | 7 cut(s) | 186, 382, 535, 555, 1486, 2344, 2377 |
| Sau96I | GGNCC | 4 cut(s) | 936, 2297, 2494, 2687 |
| SbfI | CCTGCAGG | 1 cut(s) | 1726 |
| ScaI | AGTACT | 2 cut(s) | 357, 2608 |
| SchI | GAGTC | 3 cut(s) | 788, 2217, 2661 |
| ScrFI | CCNGG | 7 cut(s) | 683, 702, 940, 1173, 1455, 2103, 2172 |
| SdaI | CCTGCAGG | 1 cut(s) | 1726 |
| SduI | GDGCHC | 3 cut(s) | 365, 1596, 2370 |
| SfaNI | GCATC | 6 cut(s) | 630, 1342, 1808, 2581, 2606, 2656 |
| SfcI | CTRYAG | 2 cut(s) | 1722, 2157 |
| Sfr274I | CTCGAG | 1 cut(s) | 2669 |
| SfuI | TTCGAA | 1 cut(s) | 1702 |
| SinI | GGWCC | 4 cut(s) | 936, 2297, 2494, 2687 |
| SlaI | CTCGAG | 1 cut(s) | 2669 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2136, 2580 |
| SmlI | CTYRAG | 5 cut(s) | 1124, 1301, 1423, 2558, 2669 |
| SmoI | CTYRAG | 5 cut(s) | 1124, 1301, 1423, 2558, 2669 |
| SphI | GCATGC | 1 cut(s) | 1399 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 1726 |
| SsiI | CCGC | 6 cut(s) | 679, 1927, 2240, 2490, 2563, 2645 |
| SspI | AATATT | 1 cut(s) | 495 |
| StyD4I | CCNGG | 7 cut(s) | 681, 700, 938, 1171, 1453, 2101, 2170 |
| StyI | CCWWGG | 3 cut(s) | 1006, 1636, 2243 |
| TaaI | ACNGT | 9 cut(s) | 401, 424, 619, 1063, 1201, 1656, 2039, 2158, 2681 |
| TaiI | ACGT | 2 cut(s) | 738, 1255 |
| TaqI | TCGA | 7 cut(s) | 98, 189, 444, 538, 1344, 1702, 2670 |
| TaqII | GACCGA | 1 cut(s) | 2434 |
| TatI | WGTACW | 3 cut(s) | 355, 1148, 2606 |
| TauI | GCSGC | 1 cut(s) | 1929 |
| TfiI | GAWTC | 8 cut(s) | 239, 686, 925, 1084, 1225, 1774, 2199, 2427 |
| TscAI | CASTG | 4 cut(s) | 406, 1252, 1465, 1813 |
| TseFI | GTSAC | 6 cut(s) | 56, 1656, 1712, 1781, 1996, 2693 |
| TseI | GCWGC | 1 cut(s) | 2594 |
| Tsp45I | GTSAC | 6 cut(s) | 56, 1656, 1712, 1781, 1996, 2693 |
| TspGWI | ACGGA | 3 cut(s) | 937, 1017, 2486 |
| TspRI | CASTG | 4 cut(s) | 406, 1252, 1465, 1813 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 661 |
| Vha464I | CTTAAG | 1 cut(s) | 1301 |
| VpaK11BI | GGWCC | 4 cut(s) | 936, 2297, 2494, 2687 |
| XapI | RAATTY | 5 cut(s) | 110, 438, 2112, 2288, 2469 |
| XbaI | TCTAGA | 2 cut(s) | 472, 1895 |
| XceI | RCATGY | 3 cut(s) | 746, 1003, 1399 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 134, 2241 |
| XhoI | CTCGAG | 1 cut(s) | 2669 |
| XmnI | GAANNNNTTC | 5 cut(s) | 266, 294, 494, 1023, 1908 |
| ZraI | GACGTC | 1 cut(s) | 736 |
| ZrmI | AGTACT | 2 cut(s) | 357, 2608 |