TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 205 | 1.7e-52 | TIR domain |
| TIR_2 | PF13676 | 25 - 123 | 2.1e-16 | TIR domain |
| NB-ARC | PF00931 | 220 - 374 | 5e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 443 - 513 | 7.4e-13 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 681 - 951 | 2e-09 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 704 - 800 | 9.3e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_8 | PF13855 | 846 - 903 | 1e-05 | Leucine rich repeat |
| C-JID | PF20160 | 1000 - 1150 | 2.5e-08 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 513 |
| AccB1I | GGYRCC | 1 cut(s) | 282 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2165 |
| AccBSI | CCGCTC | 1 cut(s) | 2924 |
| AccI | GTMKAC | 1 cut(s) | 793 |
| AccII | CGCG | 1 cut(s) | 132 |
| AccIII | TCCGGA | 3 cut(s) | 593, 2938, 3067 |
| AciI | CCGC | 7 cut(s) | 103, 130, 1066, 2211, 2408, 2922, 2971 |
| AclWI | GGATC | 7 cut(s) | 356, 369, 1926, 2739, 2939, 3078, 3131 |
| AcoI | YGGCCR | 3 cut(s) | 480, 1826, 2919 |
| AcuI | CTGAAG | 1 cut(s) | 2342 |
| AdeI | CACNNNGTG | 1 cut(s) | 282 |
| AfaI | GTAC | 8 cut(s) | 143, 1246, 1475, 2305, 2690, 2977, 3085, 3437 |
| AflII | CTTAAG | 2 cut(s) | 1088, 2363 |
| AflIII | ACRYGT | 1 cut(s) | 550 |
| AjnI | CCWGG | 6 cut(s) | 285, 1549, 2203, 2497, 2998, 3327 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1232, 1264, 2232, 2264 |
| AleI | CACNNNNGTG | 2 cut(s) | 1539, 2760 |
| Alw21I | GWGCWC | 2 cut(s) | 14, 213 |
| Alw26I | GTCTC | 7 cut(s) | 121, 1028, 1940, 2291, 2300, 2331, 2384 |
| AlwI | GGATC | 7 cut(s) | 356, 369, 1926, 2739, 2939, 3078, 3131 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2399 |
| Ama87I | CYCGRG | 2 cut(s) | 2299, 3149 |
| Aor13HI | TCCGGA | 3 cut(s) | 593, 2938, 3067 |
| AoxI | GGCC | 8 cut(s) | 21, 480, 1747, 1826, 2251, 2501, 2919, 3273 |
| ApeKI | GCWGC | 4 cut(s) | 464, 1560, 2434, 3342 |
| AseI | ATTAAT | 1 cut(s) | 3381 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2899 |
| AspS9I | GGNCC | 5 cut(s) | 21, 1748, 2017, 2208, 2501 |
| AsuC2I | CCSGG | 2 cut(s) | 2300, 2301 |
| AsuHPI | GGTGA | 4 cut(s) | 104, 249, 995, 1021 |
| AsuII | TTCGAA | 2 cut(s) | 1113, 2958 |
| AvaI | CYCGRG | 2 cut(s) | 2299, 3149 |
| AvaII | GGWCC | 2 cut(s) | 2017, 2208 |
| AxyI | CCTNAGG | 1 cut(s) | 654 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 125, 158 |
| BamHI | GGATCC | 1 cut(s) | 361 |
| BanI | GGYRCC | 1 cut(s) | 282 |
| BanII | GRGCYC | 4 cut(s) | 213, 1182, 2471, 3427 |
| BauI | CACGAG | 1 cut(s) | 1539 |
| BbsI | GAAGAC | 4 cut(s) | 102, 1547, 1894, 2645 |
| Bbv12I | GWGCWC | 2 cut(s) | 14, 213 |
| BbvI | GCAGC | 4 cut(s) | 476, 1572, 2421, 3329 |
| BccI | CCATC | 9 cut(s) | 251, 373, 489, 753, 980, 2028, 2617, 3091, 3225 |
| BceAI | ACGGC | 3 cut(s) | 1548, 2322, 2958 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 94, 128 |
| BciT130I | CCWGG | 6 cut(s) | 287, 1551, 2205, 2499, 3000, 3329 |
| BciVI | GTATCC | 2 cut(s) | 1806, 3325 |
| BclI | TGATCA | 2 cut(s) | 2065, 3370 |
| BcnI | CCSGG | 2 cut(s) | 2300, 2301 |
| BcoDI | GTCTC | 7 cut(s) | 121, 1028, 1940, 2291, 2300, 2331, 2384 |
| BfmI | CTRYAG | 2 cut(s) | 137, 2373 |
| BfrI | CTTAAG | 2 cut(s) | 1088, 2363 |
| BfuI | GTATCC | 2 cut(s) | 1806, 3325 |
| BisI | GCNGC | 5 cut(s) | 465, 1561, 2435, 2922, 3343 |
| BlpI | GCTNAGC | 1 cut(s) | 411 |
| BlsI | GCNGC | 5 cut(s) | 466, 1562, 2436, 2923, 3344 |
| Bme1390I | CCNGG | 8 cut(s) | 287, 1551, 2205, 2300, 2301, 2499, 3000, 3329 |
| Bme18I | GGWCC | 2 cut(s) | 2017, 2208 |
| BmeT110I | CYCGRG | 2 cut(s) | 2299, 3149 |
| BmgT120I | GGNCC | 5 cut(s) | 21, 1748, 2017, 2208, 2501 |
| BmiI | GGNNCC | 8 cut(s) | 284, 363, 874, 1181, 1548, 1750, 2209, 3156 |
| BmrFI | CCNGG | 8 cut(s) | 287, 1551, 2205, 2300, 2301, 2499, 3000, 3329 |
| BmrI | ACTGGG | 2 cut(s) | 52, 821 |
| BmsI | GCATC | 8 cut(s) | 424, 1300, 1479, 1609, 1689, 1842, 2342, 3164 |
| BmuI | ACTGGG | 2 cut(s) | 52, 821 |
| BpiI | GAAGAC | 4 cut(s) | 102, 1547, 1894, 2645 |
| BpmI | CTGGAG | 3 cut(s) | 189, 2138, 2273 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2909, 2925 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 411 |
| Bpu14I | TTCGAA | 2 cut(s) | 1113, 2958 |
| BpuEI | CTTGAG | 4 cut(s) | 100, 235, 1792, 1997 |
| BpuMI | CCSGG | 2 cut(s) | 2300, 2301 |
| BsaAI | YACGTR | 2 cut(s) | 2096, 2758 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2568, 3178 |
| BsaI | GGTCTC | 1 cut(s) | 1940 |
| BsaJI | CCNNGG | 5 cut(s) | 315, 2204, 2299, 2498, 2525 |
| BsaWI | WCCGGW | 5 cut(s) | 323, 593, 2728, 2938, 3067 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 8, 38, 2381, 2411, 2718, 2748 |
| Bse118I | RCCGGY | 3 cut(s) | 144, 343, 3125 |
| Bse1I | ACTGG | 3 cut(s) | 58, 827, 3023 |
| Bse21I | CCTNAGG | 1 cut(s) | 654 |
| Bse3DI | GCAATG | 2 cut(s) | 1347, 2028 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2568, 3178 |
| BseAI | TCCGGA | 3 cut(s) | 593, 2938, 3067 |
| BseBI | CCWGG | 6 cut(s) | 287, 1551, 2205, 2499, 3000, 3329 |
| BseDI | CCNNGG | 5 cut(s) | 315, 2204, 2299, 2498, 2525 |
| BseJI | GATNNNNATC | 2 cut(s) | 2568, 3178 |
| BseMI | GCAATG | 2 cut(s) | 1347, 2028 |
| BseMII | CTCAG | 6 cut(s) | 645, 753, 2140, 2208, 2808, 2939 |
| BseNI | ACTGG | 3 cut(s) | 58, 827, 3023 |
| BseRI | GAGGAG | 5 cut(s) | 16, 1016, 1559, 1994, 3449 |
| BseXI | GCAGC | 4 cut(s) | 476, 1572, 2421, 3329 |
| BsgI | GTGCAG | 1 cut(s) | 2784 |
| Bsh1236I | CGCG | 1 cut(s) | 132 |
| Bsh1285I | CGRYCG | 1 cut(s) | 175 |
| BshFI | GGCC | 8 cut(s) | 23, 482, 1749, 1828, 2253, 2503, 2921, 3275 |
| BshNI | GGYRCC | 1 cut(s) | 282 |
| BsiEI | CGRYCG | 1 cut(s) | 175 |
| BsiHKAI | GWGCWC | 2 cut(s) | 14, 213 |
| BsiHKCI | CYCGRG | 2 cut(s) | 2299, 3149 |
| BsiWI | CGTACG | 1 cut(s) | 2975 |
| BslFI | GGGAC | 2 cut(s) | 1895, 2221 |
| BsmAI | GTCTC | 7 cut(s) | 121, 1028, 1940, 2291, 2300, 2331, 2384 |
| BsmBI | CGTCTC | 2 cut(s) | 121, 1028 |
| BsmFI | GGGAC | 2 cut(s) | 1895, 2221 |
| BsmI | GAATGC | 3 cut(s) | 1352, 1691, 2144 |
| BsnI | GGCC | 8 cut(s) | 23, 482, 1749, 1828, 2253, 2503, 2921, 3275 |
| Bso31I | GGTCTC | 1 cut(s) | 1940 |
| BsoBI | CYCGRG | 2 cut(s) | 2299, 3149 |
| Bsp119I | TTCGAA | 2 cut(s) | 1113, 2958 |
| Bsp1286I | GDGCHC | 5 cut(s) | 14, 213, 1182, 2471, 3427 |
| Bsp13I | TCCGGA | 3 cut(s) | 593, 2938, 3067 |
| Bsp1407I | TGTACA | 1 cut(s) | 3083 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 411 |
| Bsp19I | CCATGG | 1 cut(s) | 315 |
| BspACI | CCGC | 7 cut(s) | 103, 130, 1066, 2211, 2408, 2922, 2971 |
| BspANI | GGCC | 8 cut(s) | 23, 482, 1749, 1828, 2253, 2503, 2921, 3275 |
| BspCNI | CTCAG | 6 cut(s) | 646, 754, 2139, 2209, 2807, 2938 |
| BspEI | TCCGGA | 3 cut(s) | 593, 2938, 3067 |
| BspFNI | CGCG | 1 cut(s) | 132 |
| BspLI | GGNNCC | 8 cut(s) | 284, 363, 874, 1181, 1548, 1750, 2209, 3156 |
| BspMAI | CTGCAG | 1 cut(s) | 141 |
| BspPI | GGATC | 7 cut(s) | 356, 369, 1926, 2739, 2939, 3078, 3131 |
| BspQI | GCTCTTC | 2 cut(s) | 383, 3407 |
| BspT104I | TTCGAA | 2 cut(s) | 1113, 2958 |
| BspT107I | GGYRCC | 1 cut(s) | 282 |
| BspTI | CTTAAG | 2 cut(s) | 1088, 2363 |
| BspTNI | GGTCTC | 1 cut(s) | 1940 |
| BsrBI | CCGCTC | 1 cut(s) | 2924 |
| BsrDI | GCAATG | 2 cut(s) | 1347, 2028 |
| BsrFI | RCCGGY | 3 cut(s) | 144, 343, 3125 |
| BsrGI | TGTACA | 1 cut(s) | 3083 |
| BsrI | ACTGG | 3 cut(s) | 58, 827, 3023 |
| BssAI | RCCGGY | 3 cut(s) | 144, 343, 3125 |
| BssECI | CCNNGG | 5 cut(s) | 315, 2204, 2299, 2498, 2525 |
| BssSI | CACGAG | 1 cut(s) | 1539 |
| BssT1I | CCWWGG | 2 cut(s) | 315, 2525 |
| Bst2BI | CACGAG | 1 cut(s) | 1539 |
| Bst2UI | CCWGG | 6 cut(s) | 287, 1551, 2205, 2499, 3000, 3329 |
| Bst4CI | ACNGT | 6 cut(s) | 1638, 2006, 2055, 2395, 2802, 3055 |
| Bst6I | CTCTTC | 5 cut(s) | 383, 1653, 1815, 2952, 3407 |
| BstAFI | CTTAAG | 2 cut(s) | 1088, 2363 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2670 |
| BstAUI | TGTACA | 1 cut(s) | 3083 |
| BstBAI | YACGTR | 2 cut(s) | 2096, 2758 |
| BstBI | TTCGAA | 2 cut(s) | 1113, 2958 |
| BstC8I | GCNNGC | 2 cut(s) | 2412, 2662 |
| BstDSI | CCRYGG | 1 cut(s) | 315 |
| BstFNI | CGCG | 1 cut(s) | 132 |
| BstMAI | GTCTC | 7 cut(s) | 121, 1028, 1940, 2291, 2300, 2331, 2384 |
| BstMCI | CGRYCG | 1 cut(s) | 175 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 145, 2416, 2443, 2475, 2670, 3152 |
| BstNI | CCWGG | 6 cut(s) | 287, 1551, 2205, 2499, 3000, 3329 |
| BstSCI | CCNGG | 8 cut(s) | 285, 1549, 2203, 2298, 2299, 2497, 2998, 3327 |
| BstSFI | CTRYAG | 2 cut(s) | 137, 2373 |
| BstUI | CGCG | 1 cut(s) | 132 |
| BstV1I | GCAGC | 4 cut(s) | 476, 1572, 2421, 3329 |
| BstV2I | GAAGAC | 4 cut(s) | 102, 1547, 1894, 2645 |
| BstX2I | RGATCY | 5 cut(s) | 361, 1918, 2731, 2931, 3136 |
| BstYI | RGATCY | 5 cut(s) | 361, 1918, 2731, 2931, 3136 |
| Bsu36I | CCTNAGG | 1 cut(s) | 654 |
| BsuI | GTATCC | 2 cut(s) | 1806, 3325 |
| BsuRI | GGCC | 8 cut(s) | 23, 482, 1749, 1828, 2253, 2503, 2921, 3275 |
| BtgI | CCRYGG | 1 cut(s) | 315 |
| BtsIMutI | CAGTG | 2 cut(s) | 65, 2400 |
| Cac8I | GCNNGC | 2 cut(s) | 2412, 2662 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2399 |
| Cfr10I | RCCGGY | 3 cut(s) | 144, 343, 3125 |
| Cfr13I | GGNCC | 5 cut(s) | 21, 1748, 2017, 2208, 2501 |
| Cfr9I | CCCGGG | 1 cut(s) | 2299 |
| CseI | GACGC | 4 cut(s) | 557, 1025, 2207, 2839 |
| Csp6I | GTAC | 8 cut(s) | 142, 1245, 1474, 2304, 2689, 2976, 3084, 3436 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2329, 2364 |
| CviAII | CATG | 9 cut(s) | 316, 788, 1493, 1515, 2273, 2548, 3081, 3364, 3396 |
| CviQI | GTAC | 8 cut(s) | 142, 1245, 1474, 2304, 2689, 2976, 3084, 3436 |
| DraI | TTTAAA | 2 cut(s) | 1143, 2317 |
| DraIII | CACNNNGTG | 1 cut(s) | 282 |
| EaeI | YGGCCR | 3 cut(s) | 480, 1826, 2919 |
| Eam1104I | CTCTTC | 5 cut(s) | 383, 1653, 1815, 2952, 3407 |
| EarI | CTCTTC | 5 cut(s) | 383, 1653, 1815, 2952, 3407 |
| Ecl136II | GAGCTC | 1 cut(s) | 211 |
| Eco130I | CCWWGG | 2 cut(s) | 315, 2525 |
| Eco147I | AGGCCT | 1 cut(s) | 3275 |
| Eco24I | GRGCYC | 4 cut(s) | 213, 1182, 2471, 3427 |
| Eco31I | GGTCTC | 1 cut(s) | 1940 |
| Eco47I | GGWCC | 2 cut(s) | 2017, 2208 |
| Eco53kI | GAGCTC | 1 cut(s) | 211 |
| Eco57I | CTGAAG | 1 cut(s) | 2342 |
| Eco81I | CCTNAGG | 1 cut(s) | 654 |
| Eco88I | CYCGRG | 2 cut(s) | 2299, 3149 |
| EcoICRI | GAGCTC | 1 cut(s) | 211 |
| EcoO109I | RGGNCCY | 3 cut(s) | 21, 1748, 2501 |
| EcoRI | GAATTC | 3 cut(s) | 336, 1266, 1776 |
| EcoRII | CCWGG | 6 cut(s) | 285, 1549, 2203, 2497, 2998, 3327 |
| EcoT14I | CCWWGG | 2 cut(s) | 315, 2525 |
| EcoT22I | ATGCAT | 1 cut(s) | 1494 |
| EcoT38I | GRGCYC | 4 cut(s) | 213, 1182, 2471, 3427 |
| ErhI | CCWWGG | 2 cut(s) | 315, 2525 |
| Esp3I | CGTCTC | 2 cut(s) | 121, 1028 |
| FaeI | CATG | 9 cut(s) | 319, 791, 1496, 1518, 2276, 2551, 3084, 3367, 3399 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1571, 1603 |
| FaqI | GGGAC | 2 cut(s) | 1895, 2221 |
| FatI | CATG | 9 cut(s) | 315, 787, 1492, 1514, 2272, 2547, 3080, 3363, 3395 |
| FauI | CCCGC | 1 cut(s) | 110 |
| FauNDI | CATATG | 2 cut(s) | 1784, 1914 |
| FbaI | TGATCA | 2 cut(s) | 2065, 3370 |
| FblI | GTMKAC | 1 cut(s) | 793 |
| Fnu4HI | GCNGC | 5 cut(s) | 465, 1561, 2435, 2922, 3343 |
| FriOI | GRGCYC | 4 cut(s) | 213, 1182, 2471, 3427 |
| Fsp4HI | GCNGC | 5 cut(s) | 465, 1561, 2435, 2922, 3343 |
| GluI | GCNGC | 5 cut(s) | 465, 1561, 2435, 2922, 3343 |
| GsuI | CTGGAG | 3 cut(s) | 189, 2138, 2273 |
| HaeIII | GGCC | 8 cut(s) | 23, 482, 1749, 1828, 2253, 2503, 2921, 3275 |
| HgaI | GACGC | 4 cut(s) | 557, 1025, 2207, 2839 |
| Hin1II | CATG | 9 cut(s) | 319, 791, 1496, 1518, 2276, 2551, 3084, 3367, 3399 |
| HincII | GTYRAC | 2 cut(s) | 1532, 2058 |
| HindII | GTYRAC | 2 cut(s) | 1532, 2058 |
| HindIII | AAGCTT | 6 cut(s) | 1145, 2045, 2360, 2444, 2459, 2681 |
| HphI | GGTGA | 4 cut(s) | 104, 249, 995, 1021 |
| Hpy166II | GTNNAC | 7 cut(s) | 794, 865, 1532, 1646, 1959, 2038, 2058 |
| Hpy8I | GTNNAC | 7 cut(s) | 794, 865, 1532, 1646, 1959, 2038, 2058 |
| Hpy99I | CGWCG | 4 cut(s) | 374, 1041, 2424, 2591 |
| HpyCH4III | ACNGT | 6 cut(s) | 1638, 2006, 2055, 2395, 2802, 3055 |
| HpyCH4IV | ACGT | 7 cut(s) | 372, 550, 1021, 2095, 2422, 2757, 2978 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 145, 2416, 2443, 2475, 2670, 3152 |
| HpySE526I | ACGT | 7 cut(s) | 372, 550, 1021, 2095, 2422, 2757, 2978 |
| Hsp92II | CATG | 9 cut(s) | 319, 791, 1496, 1518, 2276, 2551, 3084, 3367, 3399 |
| Kpn2I | TCCGGA | 3 cut(s) | 593, 2938, 3067 |
| Ksp22I | TGATCA | 2 cut(s) | 2065, 3370 |
| LguI | GCTCTTC | 2 cut(s) | 383, 3407 |
| LmnI | GCTCC | 5 cut(s) | 191, 655, 1185, 1546, 3160 |
| Lsp1109I | GCAGC | 4 cut(s) | 476, 1572, 2421, 3329 |
| LweI | GCATC | 8 cut(s) | 424, 1300, 1479, 1609, 1689, 1842, 2342, 3164 |
| MaeII | ACGT | 7 cut(s) | 372, 550, 1021, 2095, 2422, 2757, 2978 |
| MaeIII | GTNAC | 9 cut(s) | 431, 941, 1003, 1100, 1254, 2000, 2802, 3193, 3226 |
| MbiI | CCGCTC | 1 cut(s) | 2924 |
| MfeI | CAATTG | 2 cut(s) | 2235, 2854 |
| MflI | RGATCY | 5 cut(s) | 361, 1918, 2731, 2931, 3136 |
| MhlI | GDGCHC | 5 cut(s) | 14, 213, 1182, 2471, 3427 |
| MlyI | GAGTC | 7 cut(s) | 320, 1262, 1937, 2302, 2503, 3178, 3274 |
| MmeI | TCCRAC | 3 cut(s) | 393, 589, 1301 |
| Mph1103I | ATGCAT | 1 cut(s) | 1494 |
| MroI | TCCGGA | 3 cut(s) | 593, 2938, 3067 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2899 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1539, 2760, 3091 |
| MspCI | CTTAAG | 2 cut(s) | 1088, 2363 |
| MspR9I | CCNGG | 8 cut(s) | 287, 1551, 2205, 2300, 2301, 2499, 3000, 3329 |
| MunI | CAATTG | 2 cut(s) | 2235, 2854 |
| Mva1269I | GAATGC | 3 cut(s) | 1352, 1691, 2144 |
| MvaI | CCWGG | 6 cut(s) | 287, 1551, 2205, 2499, 3000, 3329 |
| MvnI | CGCG | 1 cut(s) | 132 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 145, 2416, 2443, 2475, 2670, 3152 |
| NciI | CCSGG | 2 cut(s) | 2300, 2301 |
| NcoI | CCATGG | 1 cut(s) | 315 |
| NdeI | CATATG | 2 cut(s) | 1784, 1914 |
| NlaIII | CATG | 9 cut(s) | 319, 791, 1496, 1518, 2276, 2551, 3084, 3367, 3399 |
| NlaIV | GGNNCC | 8 cut(s) | 284, 363, 874, 1181, 1548, 1750, 2209, 3156 |
| NmuCI | GTSAC | 5 cut(s) | 941, 1100, 1254, 2000, 2802 |
| NsiI | ATGCAT | 1 cut(s) | 1494 |
| NspV | TTCGAA | 2 cut(s) | 1113, 2958 |
| OliI | CACNNNNGTG | 2 cut(s) | 1539, 2760 |
| PaeR7I | CTCGAG | 1 cut(s) | 3149 |
| PceI | AGGCCT | 1 cut(s) | 3275 |
| PciSI | GCTCTTC | 2 cut(s) | 383, 3407 |
| PctI | GAATGC | 3 cut(s) | 1352, 1691, 2144 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2899 |
| Pfl23II | CGTACG | 1 cut(s) | 2975 |
| PflFI | GACNNNGTC | 1 cut(s) | 2395 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2165 |
| PfoI | TCCNGGA | 2 cut(s) | 2998, 3327 |
| PkrI | GCNGC | 5 cut(s) | 466, 1562, 2436, 2923, 3344 |
| PleI | GAGTC | 7 cut(s) | 319, 1261, 1936, 2301, 2502, 3178, 3274 |
| PpsI | GAGTC | 7 cut(s) | 319, 1261, 1936, 2301, 2502, 3178, 3274 |
| Ppu21I | YACGTR | 2 cut(s) | 2096, 2758 |
| PshBI | ATTAAT | 1 cut(s) | 3381 |
| PsiI | TTATAA | 1 cut(s) | 513 |
| Psp124BI | GAGCTC | 1 cut(s) | 213 |
| Psp6I | CCWGG | 6 cut(s) | 285, 1549, 2203, 2497, 2998, 3327 |
| PspGI | CCWGG | 6 cut(s) | 285, 1549, 2203, 2497, 2998, 3327 |
| PspLI | CGTACG | 1 cut(s) | 2975 |
| PspN4I | GGNNCC | 8 cut(s) | 284, 363, 874, 1181, 1548, 1750, 2209, 3156 |
| PspPI | GGNCC | 5 cut(s) | 21, 1748, 2017, 2208, 2501 |
| PstI | CTGCAG | 1 cut(s) | 141 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2399 |
| PsuI | RGATCY | 5 cut(s) | 361, 1918, 2731, 2931, 3136 |
| PsyI | GACNNNGTC | 1 cut(s) | 2395 |
| RsaI | GTAC | 8 cut(s) | 143, 1246, 1475, 2305, 2690, 2977, 3085, 3437 |
| RsaNI | GTAC | 8 cut(s) | 142, 1245, 1474, 2304, 2689, 2976, 3084, 3436 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1539, 2760, 3091 |
| SacI | GAGCTC | 1 cut(s) | 213 |
| SapI | GCTCTTC | 2 cut(s) | 383, 3407 |
| SatI | GCNGC | 5 cut(s) | 465, 1561, 2435, 2922, 3343 |
| Sau96I | GGNCC | 5 cut(s) | 21, 1748, 2017, 2208, 2501 |
| SchI | GAGTC | 7 cut(s) | 320, 1262, 1937, 2302, 2503, 3178, 3274 |
| ScrFI | CCNGG | 8 cut(s) | 287, 1551, 2205, 2300, 2301, 2499, 3000, 3329 |
| SduI | GDGCHC | 5 cut(s) | 14, 213, 1182, 2471, 3427 |
| SfaNI | GCATC | 8 cut(s) | 424, 1300, 1479, 1609, 1689, 1842, 2342, 3164 |
| SfcI | CTRYAG | 2 cut(s) | 137, 2373 |
| Sfr274I | CTCGAG | 1 cut(s) | 3149 |
| SfuI | TTCGAA | 2 cut(s) | 1113, 2958 |
| SinI | GGWCC | 2 cut(s) | 2017, 2208 |
| SlaI | CTCGAG | 1 cut(s) | 3149 |
| SmaI | CCCGGG | 1 cut(s) | 2301 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1539, 2760, 3091 |
| SmlI | CTYRAG | 7 cut(s) | 79, 214, 1088, 1771, 1976, 2363, 3149 |
| SmoI | CTYRAG | 7 cut(s) | 79, 214, 1088, 1771, 1976, 2363, 3149 |
| SseBI | AGGCCT | 1 cut(s) | 3275 |
| SsiI | CCGC | 7 cut(s) | 103, 130, 1066, 2211, 2408, 2922, 2971 |
| SspI | AATATT | 3 cut(s) | 1403, 2313, 2898 |
| SstI | GAGCTC | 1 cut(s) | 213 |
| StuI | AGGCCT | 1 cut(s) | 3275 |
| StyD4I | CCNGG | 8 cut(s) | 285, 1549, 2203, 2298, 2299, 2497, 2998, 3327 |
| StyI | CCWWGG | 2 cut(s) | 315, 2525 |
| TaaI | ACNGT | 6 cut(s) | 1638, 2006, 2055, 2395, 2802, 3055 |
| TaiI | ACGT | 7 cut(s) | 375, 553, 1024, 2098, 2425, 2760, 2981 |
| TaqII | GACCGA | 1 cut(s) | 189 |
| TatI | WGTACW | 2 cut(s) | 1244, 3083 |
| TauI | GCSGC | 1 cut(s) | 2924 |
| TscAI | CASTG | 2 cut(s) | 65, 2400 |
| TseFI | GTSAC | 5 cut(s) | 941, 1100, 1254, 2000, 2802 |
| TseI | GCWGC | 4 cut(s) | 464, 1560, 2434, 3342 |
| Tsp45I | GTSAC | 5 cut(s) | 941, 1100, 1254, 2000, 2802 |
| TspGWI | ACGGA | 2 cut(s) | 1899, 2526 |
| TspMI | CCCGGG | 1 cut(s) | 2299 |
| TspRI | CASTG | 2 cut(s) | 65, 2400 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2395 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2165 |
| Vha464I | CTTAAG | 2 cut(s) | 1088, 2363 |
| VpaK11BI | GGWCC | 2 cut(s) | 2017, 2208 |
| VspI | ATTAAT | 1 cut(s) | 3381 |
| XbaI | TCTAGA | 1 cut(s) | 964 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 57, 283 |
| XhoI | CTCGAG | 1 cut(s) | 3149 |
| XmaI | CCCGGG | 1 cut(s) | 2299 |
| XmiI | GTMKAC | 1 cut(s) | 793 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2899 |
| Zsp2I | ATGCAT | 1 cut(s) | 1494 |