TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 204 | 2.8e-53 | TIR domain |
| TIR_2 | PF13676 | 25 - 122 | 1.4e-17 | TIR domain |
| NB-ARC | PF00931 | 212 - 379 | 5.1e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 447 - 525 | 4.1e-08 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 662 - 793 | 2.8e-09 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 715 - 794 | 3.9e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 854 - 927 | 1.6e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 872 - 951 | 5.1e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| C-JID | PF20160 | 1006 - 1138 | 3.6e-14 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1979 |
| AccI | GTMKAC | 3 cut(s) | 96, 1232, 1591 |
| AciI | CCGC | 4 cut(s) | 885, 2418, 2512, 3508 |
| AclI | AACGTT | 1 cut(s) | 369 |
| AclWI | GGATC | 5 cut(s) | 353, 2482, 2840, 2853, 2966 |
| AcoI | YGGCCR | 1 cut(s) | 2380 |
| AcsI | RAATTY | 8 cut(s) | 489, 605, 867, 1428, 1754, 1787, 2198, 3159 |
| AcuI | CTGAAG | 1 cut(s) | 293 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 2131, 2549, 2587, 3025, 3356, 3513 |
| AhlI | ACTAGT | 2 cut(s) | 428, 1201 |
| AjnI | CCWGG | 2 cut(s) | 323, 2407 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 253, 285, 973, 1005, 1247, 1279, 1801, 1833 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 184, 216 |
| Alw21I | GWGCWC | 3 cut(s) | 14, 213, 1110 |
| Alw26I | GTCTC | 5 cut(s) | 347, 1845, 2113, 2742, 2925 |
| AlwI | GGATC | 5 cut(s) | 353, 2482, 2840, 2853, 2966 |
| Ama87I | CYCGRG | 2 cut(s) | 1142, 2009 |
| AoxI | GGCC | 6 cut(s) | 817, 1192, 2380, 2503, 3169, 3242 |
| ApeKI | GCWGC | 5 cut(s) | 1393, 2371, 2862, 3102, 3470 |
| ApoI | RAATTY | 8 cut(s) | 489, 605, 867, 1428, 1754, 1787, 2198, 3159 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1406, 1438 |
| AseI | ATTAAT | 1 cut(s) | 2940 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1272, 3041, 3306 |
| AspS9I | GGNCC | 2 cut(s) | 1045, 2503 |
| AsuC2I | CCSGG | 2 cut(s) | 3021, 3336 |
| AsuHPI | GGTGA | 8 cut(s) | 249, 463, 1850, 2633, 2639, 3040, 3195, 3382 |
| AsuII | TTCGAA | 3 cut(s) | 506, 1405, 2204 |
| AsuNHI | GCTAGC | 1 cut(s) | 727 |
| AvaI | CYCGRG | 2 cut(s) | 1142, 2009 |
| AvaII | GGWCC | 1 cut(s) | 1045 |
| BamHI | GGATCC | 1 cut(s) | 2845 |
| BanI | GGYRCC | 1 cut(s) | 1979 |
| BanII | GRGCYC | 3 cut(s) | 213, 1110, 3388 |
| Bbv12I | GWGCWC | 3 cut(s) | 14, 213, 1110 |
| BbvI | GCAGC | 5 cut(s) | 1405, 2358, 2874, 3114, 3482 |
| BccI | CCATC | 9 cut(s) | 54, 370, 688, 756, 1910, 2794, 2857, 2921, 3103 |
| BceAI | ACGGC | 1 cut(s) | 2416 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1385, 1419, 2785, 2819, 2851, 2885 |
| BciT130I | CCWGG | 2 cut(s) | 325, 2409 |
| BciVI | GTATCC | 4 cut(s) | 127, 493, 1839, 3240 |
| BclI | TGATCA | 1 cut(s) | 1767 |
| BcnI | CCSGG | 2 cut(s) | 3021, 3336 |
| BcoDI | GTCTC | 5 cut(s) | 347, 1845, 2113, 2742, 2925 |
| BcuI | ACTAGT | 2 cut(s) | 428, 1201 |
| BfuI | GTATCC | 4 cut(s) | 127, 493, 1839, 3240 |
| BglII | AGATCT | 5 cut(s) | 469, 1450, 2161, 2456, 2779 |
| BisI | GCNGC | 5 cut(s) | 1394, 2372, 2863, 3103, 3471 |
| BlpI | GCTNAGC | 2 cut(s) | 408, 723 |
| BlsI | GCNGC | 5 cut(s) | 1395, 2373, 2864, 3104, 3472 |
| BmcAI | AGTACT | 2 cut(s) | 972, 1517 |
| Bme1390I | CCNGG | 4 cut(s) | 325, 2409, 3021, 3336 |
| Bme18I | GGWCC | 1 cut(s) | 1045 |
| BmeT110I | CYCGRG | 2 cut(s) | 1142, 2009 |
| BmgT120I | GGNCC | 2 cut(s) | 1045, 2503 |
| BmiI | GGNNCC | 3 cut(s) | 1981, 2504, 2847 |
| BmrFI | CCNGG | 4 cut(s) | 325, 2409, 3021, 3336 |
| BmrI | ACTGGG | 2 cut(s) | 1507, 2309 |
| BmsI | GCATC | 6 cut(s) | 38, 649, 711, 1065, 1237, 2721 |
| BmtI | GCTAGC | 1 cut(s) | 731 |
| BmuI | ACTGGG | 2 cut(s) | 1507, 2309 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2734 |
| BpmI | CTGGAG | 1 cut(s) | 2609 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 408, 723 |
| Bpu14I | TTCGAA | 3 cut(s) | 506, 1405, 2204 |
| BpuEI | CTTGAG | 7 cut(s) | 227, 650, 1124, 1825, 2045, 2753, 2786 |
| BpuMI | CCSGG | 2 cut(s) | 3021, 3336 |
| Bsa29I | ATCGAT | 1 cut(s) | 2270 |
| BsaAI | YACGTR | 1 cut(s) | 3286 |
| BsaJI | CCNNGG | 8 cut(s) | 148, 1143, 2407, 2408, 2489, 3019, 3153, 3206 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 2131, 2549, 2587, 3025, 3356, 3513 |
| Bse118I | RCCGGY | 1 cut(s) | 340 |
| Bse1I | ACTGG | 6 cut(s) | 978, 1513, 1999, 2304, 2922, 2939 |
| Bse3DI | GCAATG | 1 cut(s) | 763 |
| BseBI | CCWGG | 2 cut(s) | 325, 2409 |
| BseCI | ATCGAT | 1 cut(s) | 2270 |
| BseDI | CCNNGG | 8 cut(s) | 148, 1143, 2407, 2408, 2489, 3019, 3153, 3206 |
| BseGI | GGATG | 8 cut(s) | 295, 699, 880, 955, 1921, 2500, 2849, 3114 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 2131, 2549, 2587, 3025, 3356, 3513 |
| BseMI | GCAATG | 1 cut(s) | 763 |
| BseMII | CTCAG | 5 cut(s) | 206, 345, 399, 2444, 2990 |
| BseNI | ACTGG | 6 cut(s) | 978, 1513, 1999, 2304, 2922, 2939 |
| BseRI | GAGGAG | 3 cut(s) | 45, 586, 2027 |
| BseX3I | CGGCCG | 1 cut(s) | 2380 |
| BseXI | GCAGC | 5 cut(s) | 1405, 2358, 2874, 3114, 3482 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2383 |
| BshFI | GGCC | 6 cut(s) | 819, 1194, 2382, 2505, 3171, 3244 |
| BshNI | GGYRCC | 1 cut(s) | 1979 |
| BshVI | ATCGAT | 1 cut(s) | 2270 |
| BsiEI | CGRYCG | 1 cut(s) | 2383 |
| BsiHKAI | GWGCWC | 3 cut(s) | 14, 213, 1110 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1142, 2009 |
| BsiSI | CCGG | 3 cut(s) | 341, 3021, 3335 |
| BslFI | GGGAC | 4 cut(s) | 1767, 2257, 2994, 3075 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 2131, 2549, 2587, 3025, 3356, 3513 |
| BsmAI | GTCTC | 5 cut(s) | 347, 1845, 2113, 2742, 2925 |
| BsmFI | GGGAC | 4 cut(s) | 1767, 2257, 2994, 3075 |
| BsmI | GAATGC | 5 cut(s) | 502, 1126, 1493, 1890, 2177 |
| BsnI | GGCC | 6 cut(s) | 819, 1194, 2382, 2505, 3171, 3244 |
| BsoBI | CYCGRG | 2 cut(s) | 1142, 2009 |
| Bsp119I | TTCGAA | 3 cut(s) | 506, 1405, 2204 |
| Bsp1286I | GDGCHC | 4 cut(s) | 14, 213, 1110, 3388 |
| Bsp1407I | TGTACA | 1 cut(s) | 3396 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 408, 723 |
| BspACI | CCGC | 4 cut(s) | 885, 2418, 2512, 3508 |
| BspANI | GGCC | 6 cut(s) | 819, 1194, 2382, 2505, 3171, 3244 |
| BspCNI | CTCAG | 5 cut(s) | 207, 344, 400, 2445, 2989 |
| BspDI | ATCGAT | 1 cut(s) | 2270 |
| BspHI | TCATGA | 1 cut(s) | 655 |
| BspLI | GGNNCC | 3 cut(s) | 1981, 2504, 2847 |
| BspOI | GCTAGC | 1 cut(s) | 731 |
| BspPI | GGATC | 5 cut(s) | 353, 2482, 2840, 2853, 2966 |
| BspT104I | TTCGAA | 3 cut(s) | 506, 1405, 2204 |
| BspT107I | GGYRCC | 1 cut(s) | 1979 |
| BsrDI | GCAATG | 1 cut(s) | 763 |
| BsrFI | RCCGGY | 1 cut(s) | 340 |
| BsrGI | TGTACA | 1 cut(s) | 3396 |
| BsrI | ACTGG | 6 cut(s) | 978, 1513, 1999, 2304, 2922, 2939 |
| BssAI | RCCGGY | 1 cut(s) | 340 |
| BssECI | CCNNGG | 8 cut(s) | 148, 1143, 2407, 2408, 2489, 3019, 3153, 3206 |
| BssNAI | GTATAC | 1 cut(s) | 1233 |
| BssT1I | CCWWGG | 4 cut(s) | 148, 2489, 3153, 3206 |
| Bst1107I | GTATAC | 1 cut(s) | 1233 |
| Bst2UI | CCWGG | 2 cut(s) | 325, 2409 |
| Bst4CI | ACNGT | 6 cut(s) | 806, 1259, 1680, 2296, 3058, 3306 |
| Bst6I | CTCTTC | 6 cut(s) | 432, 873, 1340, 1689, 1848, 3459 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2718 |
| BstAUI | TGTACA | 1 cut(s) | 3396 |
| BstBAI | YACGTR | 1 cut(s) | 3286 |
| BstBI | TTCGAA | 3 cut(s) | 506, 1405, 2204 |
| BstC8I | GCNNGC | 5 cut(s) | 729, 1391, 2710, 2755, 3169 |
| BstDEI | CTNAG | 8 cut(s) | 215, 331, 408, 516, 723, 1880, 2453, 2976 |
| BstEII | GGTNACC | 1 cut(s) | 451 |
| BstF5I | GGATG | 8 cut(s) | 295, 699, 880, 955, 1921, 2500, 2849, 3114 |
| BstMAI | GTCTC | 5 cut(s) | 347, 1845, 2113, 2742, 2925 |
| BstMCI | CGRYCG | 1 cut(s) | 2383 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 659, 728, 774, 2511, 2718 |
| BstNI | CCWGG | 2 cut(s) | 325, 2409 |
| BstNSI | RCATGY | 2 cut(s) | 1371, 1393 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2734 |
| BstPI | GGTNACC | 1 cut(s) | 451 |
| BstSCI | CCNGG | 4 cut(s) | 323, 2407, 3019, 3334 |
| BstV1I | GCAGC | 5 cut(s) | 1405, 2358, 2874, 3114, 3482 |
| BstX2I | RGATCY | 7 cut(s) | 358, 469, 1450, 2161, 2456, 2779, 2845 |
| BstYI | RGATCY | 7 cut(s) | 358, 469, 1450, 2161, 2456, 2779, 2845 |
| BstZ17I | GTATAC | 1 cut(s) | 1233 |
| BstZI | CGGCCG | 1 cut(s) | 2380 |
| Bsu15I | ATCGAT | 1 cut(s) | 2270 |
| BsuI | GTATCC | 4 cut(s) | 127, 493, 1839, 3240 |
| BsuRI | GGCC | 6 cut(s) | 819, 1194, 2382, 2505, 3171, 3244 |
| BsuTUI | ATCGAT | 1 cut(s) | 2270 |
| BtgZI | GCGATG | 1 cut(s) | 2550 |
| BtsCI | GGATG | 8 cut(s) | 295, 699, 880, 955, 1921, 2500, 2849, 3114 |
| BtsIMutI | CAGTG | 4 cut(s) | 317, 1992, 2915, 3428 |
| Cac8I | GCNNGC | 5 cut(s) | 729, 1391, 2710, 2755, 3169 |
| CciI | TCATGA | 1 cut(s) | 655 |
| Cfr10I | RCCGGY | 1 cut(s) | 340 |
| Cfr13I | GGNCC | 2 cut(s) | 1045, 2503 |
| ClaI | ATCGAT | 1 cut(s) | 2270 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 539, 574 |
| DdeI | CTNAG | 8 cut(s) | 215, 331, 408, 516, 723, 1880, 2453, 2976 |
| DraI | TTTAAA | 1 cut(s) | 957 |
| EaeI | YGGCCR | 1 cut(s) | 2380 |
| EagI | CGGCCG | 1 cut(s) | 2380 |
| Eam1104I | CTCTTC | 6 cut(s) | 432, 873, 1340, 1689, 1848, 3459 |
| EarI | CTCTTC | 6 cut(s) | 432, 873, 1340, 1689, 1848, 3459 |
| Ecl136II | GAGCTC | 2 cut(s) | 211, 1108 |
| EclXI | CGGCCG | 1 cut(s) | 2380 |
| Eco130I | CCWWGG | 4 cut(s) | 148, 2489, 3153, 3206 |
| Eco147I | AGGCCT | 2 cut(s) | 1194, 3244 |
| Eco24I | GRGCYC | 3 cut(s) | 213, 1110, 3388 |
| Eco32I | GATATC | 1 cut(s) | 2632 |
| Eco47I | GGWCC | 1 cut(s) | 1045 |
| Eco52I | CGGCCG | 1 cut(s) | 2380 |
| Eco53kI | GAGCTC | 2 cut(s) | 211, 1108 |
| Eco57I | CTGAAG | 1 cut(s) | 293 |
| Eco88I | CYCGRG | 2 cut(s) | 1142, 2009 |
| Eco91I | GGTNACC | 1 cut(s) | 451 |
| EcoICRI | GAGCTC | 2 cut(s) | 211, 1108 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2503 |
| EcoO65I | GGTNACC | 1 cut(s) | 451 |
| EcoRI | GAATTC | 2 cut(s) | 1754, 3159 |
| EcoRII | CCWGG | 2 cut(s) | 323, 2407 |
| EcoRV | GATATC | 1 cut(s) | 2632 |
| EcoT14I | CCWWGG | 4 cut(s) | 148, 2489, 3153, 3206 |
| EcoT22I | ATGCAT | 3 cut(s) | 1252, 1533, 1737 |
| EcoT38I | GRGCYC | 3 cut(s) | 213, 1110, 3388 |
| ErhI | CCWWGG | 4 cut(s) | 148, 2489, 3153, 3206 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 373, 405, 893, 925, 3137, 3169, 3475, 3507 |
| FaqI | GGGAC | 4 cut(s) | 1767, 2257, 2994, 3075 |
| FauI | CCCGC | 1 cut(s) | 3515 |
| FbaI | TGATCA | 1 cut(s) | 1767 |
| FblI | GTMKAC | 3 cut(s) | 96, 1232, 1591 |
| Fnu4HI | GCNGC | 5 cut(s) | 1394, 2372, 2863, 3103, 3471 |
| FokI | GGATG | 8 cut(s) | 302, 706, 887, 962, 1928, 2507, 2836, 3121 |
| FriOI | GRGCYC | 3 cut(s) | 213, 1110, 3388 |
| Fsp4HI | GCNGC | 5 cut(s) | 1394, 2372, 2863, 3103, 3471 |
| GluI | GCNGC | 5 cut(s) | 1394, 2372, 2863, 3103, 3471 |
| GsuI | CTGGAG | 1 cut(s) | 2609 |
| HaeIII | GGCC | 6 cut(s) | 819, 1194, 2382, 2505, 3171, 3244 |
| HapII | CCGG | 3 cut(s) | 341, 3021, 3335 |
| HindIII | AAGCTT | 2 cut(s) | 1852, 2228 |
| HpaII | CCGG | 3 cut(s) | 341, 3021, 3335 |
| HphI | GGTGA | 8 cut(s) | 249, 463, 1850, 2633, 2639, 3040, 3195, 3382 |
| Hpy166II | GTNNAC | 5 cut(s) | 97, 426, 1233, 1592, 3397 |
| Hpy188I | TCNGA | 6 cut(s) | 1119, 1956, 2454, 2845, 3036, 3256 |
| Hpy8I | GTNNAC | 5 cut(s) | 97, 426, 1233, 1592, 3397 |
| HpyCH4III | ACNGT | 6 cut(s) | 806, 1259, 1680, 2296, 3058, 3306 |
| HpyCH4IV | ACGT | 6 cut(s) | 369, 584, 1864, 2605, 3280, 3285 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 659, 728, 774, 2511, 2718 |
| HpyF3I | CTNAG | 8 cut(s) | 215, 331, 408, 516, 723, 1880, 2453, 2976 |
| HpySE526I | ACGT | 6 cut(s) | 369, 584, 1864, 2605, 3280, 3285 |
| Ksp22I | TGATCA | 1 cut(s) | 1767 |
| LmnI | GCTCC | 4 cut(s) | 216, 529, 2180, 3079 |
| Lsp1109I | GCAGC | 5 cut(s) | 1405, 2358, 2874, 3114, 3482 |
| LweI | GCATC | 6 cut(s) | 38, 649, 711, 1065, 1237, 2721 |
| MaeII | ACGT | 6 cut(s) | 369, 584, 1864, 2605, 3280, 3285 |
| MaeIII | GTNAC | 5 cut(s) | 451, 616, 1680, 2695, 3281 |
| MfeI | CAATTG | 1 cut(s) | 2478 |
| MflI | RGATCY | 7 cut(s) | 358, 469, 1450, 2161, 2456, 2779, 2845 |
| MhlI | GDGCHC | 4 cut(s) | 14, 213, 1110, 3388 |
| MlyI | GAGTC | 5 cut(s) | 1583, 1592, 2115, 2744, 2976 |
| MmeI | TCCRAC | 8 cut(s) | 352, 1072, 1245, 1316, 2266, 2307, 2823, 3234 |
| Mph1103I | ATGCAT | 3 cut(s) | 1252, 1533, 1737 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1272, 3041, 3306 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1526 |
| MspA1I | CMGCKG | 2 cut(s) | 3105, 3167 |
| MspI | CCGG | 3 cut(s) | 341, 3021, 3335 |
| MspR9I | CCNGG | 4 cut(s) | 325, 2409, 3021, 3336 |
| MunI | CAATTG | 1 cut(s) | 2478 |
| Mva1269I | GAATGC | 5 cut(s) | 502, 1126, 1493, 1890, 2177 |
| MvaI | CCWGG | 2 cut(s) | 325, 2409 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 659, 728, 774, 2511, 2718 |
| NciI | CCSGG | 2 cut(s) | 3021, 3336 |
| NheI | GCTAGC | 1 cut(s) | 727 |
| NlaIV | GGNNCC | 3 cut(s) | 1981, 2504, 2847 |
| NmuCI | GTSAC | 2 cut(s) | 451, 3281 |
| NsiI | ATGCAT | 3 cut(s) | 1252, 1533, 1737 |
| NspI | RCATGY | 2 cut(s) | 1371, 1393 |
| NspV | TTCGAA | 3 cut(s) | 506, 1405, 2204 |
| PaeI | GCATGC | 1 cut(s) | 1393 |
| PaeR7I | CTCGAG | 1 cut(s) | 2009 |
| PagI | TCATGA | 1 cut(s) | 655 |
| PasI | CCCWGGG | 1 cut(s) | 2408 |
| PceI | AGGCCT | 2 cut(s) | 1194, 3244 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 581 |
| PctI | GAATGC | 5 cut(s) | 502, 1126, 1493, 1890, 2177 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1272, 3041, 3306 |
| PkrI | GCNGC | 5 cut(s) | 1395, 2373, 2864, 3104, 3472 |
| PleI | GAGTC | 5 cut(s) | 1582, 1591, 2115, 2743, 2976 |
| PpsI | GAGTC | 5 cut(s) | 1582, 1591, 2115, 2743, 2976 |
| Ppu21I | YACGTR | 1 cut(s) | 3286 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2734 |
| PshBI | ATTAAT | 1 cut(s) | 2940 |
| Psp124BI | GAGCTC | 2 cut(s) | 213, 1110 |
| Psp1406I | AACGTT | 1 cut(s) | 369 |
| Psp6I | CCWGG | 2 cut(s) | 323, 2407 |
| PspEI | GGTNACC | 1 cut(s) | 451 |
| PspGI | CCWGG | 2 cut(s) | 323, 2407 |
| PspN4I | GGNNCC | 3 cut(s) | 1981, 2504, 2847 |
| PspPI | GGNCC | 2 cut(s) | 1045, 2503 |
| PsuI | RGATCY | 7 cut(s) | 358, 469, 1450, 2161, 2456, 2779, 2845 |
| PvuII | CAGCTG | 2 cut(s) | 3105, 3167 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1526 |
| SacI | GAGCTC | 2 cut(s) | 213, 1110 |
| SatI | GCNGC | 5 cut(s) | 1394, 2372, 2863, 3103, 3471 |
| Sau96I | GGNCC | 2 cut(s) | 1045, 2503 |
| ScaI | AGTACT | 2 cut(s) | 972, 1517 |
| SchI | GAGTC | 5 cut(s) | 1583, 1592, 2115, 2744, 2976 |
| ScrFI | CCNGG | 4 cut(s) | 325, 2409, 3021, 3336 |
| SduI | GDGCHC | 4 cut(s) | 14, 213, 1110, 3388 |
| SfaNI | GCATC | 6 cut(s) | 38, 649, 711, 1065, 1237, 2721 |
| Sfr274I | CTCGAG | 1 cut(s) | 2009 |
| SfuI | TTCGAA | 3 cut(s) | 506, 1405, 2204 |
| SinI | GGWCC | 1 cut(s) | 1045 |
| SlaI | CTCGAG | 1 cut(s) | 2009 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1526 |
| SmlI | CTYRAG | 8 cut(s) | 206, 629, 1103, 1804, 2009, 2024, 2732, 2765 |
| SmoI | CTYRAG | 8 cut(s) | 206, 629, 1103, 1804, 2009, 2024, 2732, 2765 |
| SpeI | ACTAGT | 2 cut(s) | 428, 1201 |
| SphI | GCATGC | 1 cut(s) | 1393 |
| SseBI | AGGCCT | 2 cut(s) | 1194, 3244 |
| SsiI | CCGC | 4 cut(s) | 885, 2418, 2512, 3508 |
| SspI | AATATT | 2 cut(s) | 1273, 2156 |
| SstI | GAGCTC | 2 cut(s) | 213, 1110 |
| StuI | AGGCCT | 2 cut(s) | 1194, 3244 |
| StyD4I | CCNGG | 4 cut(s) | 323, 2407, 3019, 3334 |
| StyI | CCWWGG | 4 cut(s) | 148, 2489, 3153, 3206 |
| TaaI | ACNGT | 6 cut(s) | 806, 1259, 1680, 2296, 3058, 3306 |
| TaiI | ACGT | 6 cut(s) | 372, 587, 1867, 2608, 3283, 3288 |
| TatI | WGTACW | 5 cut(s) | 970, 1515, 2296, 2822, 3396 |
| TscAI | CASTG | 4 cut(s) | 317, 1999, 2922, 3435 |
| TseFI | GTSAC | 2 cut(s) | 451, 3281 |
| TseI | GCWGC | 5 cut(s) | 1393, 2371, 2862, 3102, 3470 |
| Tsp45I | GTSAC | 2 cut(s) | 451, 3281 |
| TspGWI | ACGGA | 2 cut(s) | 1341, 2570 |
| TspRI | CASTG | 4 cut(s) | 317, 1999, 2922, 3435 |
| VpaK11BI | GGWCC | 1 cut(s) | 1045 |
| VspI | ATTAAT | 1 cut(s) | 2940 |
| XapI | RAATTY | 8 cut(s) | 489, 605, 867, 1428, 1754, 1787, 2198, 3159 |
| XceI | RCATGY | 2 cut(s) | 1371, 1393 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 283, 2496 |
| XhoI | CTCGAG | 1 cut(s) | 2009 |
| XmiI | GTMKAC | 3 cut(s) | 96, 1232, 1591 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1272, 3041, 3306 |
| ZrmI | AGTACT | 2 cut(s) | 972, 1517 |
| Zsp2I | ATGCAT | 3 cut(s) | 1252, 1533, 1737 |