RchiOBHm_Chr6g0250241

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000007
Physical Location & Seq
Reverse (-)
5855313 .. 5860149
4837 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22432

Sequence Viewer

Length: 3870 bp
ATGAGCATACAAAGTTCTTCACCTCAGTGGCAATACGATGTCTTTTTGAGTTTTAGAGGCAAGGACACTCGAAAGGGTTTTACAAACTATTTATACACTGCATTGGATCATCAAAAAATAAAAACTTTCAGGGATGATCCTGATCTTGAAAAAGGGGAAGTTATTTCTCCAGCACTTTTTGCTGCAGTTAAACAATCAAGATTTGCCCTCATTGTTCTCTCACAAAATTATGCATCGTCAACATGGTGCTTGGATGAACTTGTAAGAATTCTTGAATGCATGAAAGCAAGAGAAACGGTGCTGCCAATTTTCTATGATGTTGATCCCTCTGATGTACGAAAGCAAACAGGGAGTTTTAGAGAAGCCTTCGCTAATCATGAAGAAAGGTTTAGGGATGAGAATGAGAAAGTGCAAAGGTGGAGATATGCTTTGACAGAAGTGGCAAGTTTCTCTGGGTGGAACTCCAAGGAATGGAGGTATGAATCAGAGCTCATCAGAGATATTGTTCAAGTTATACGGAGAAAATTGCAAGCTACATCATTCAGTTATGCAAGAAATCTAGTTGGAATTTACTCAACAGAACTGCAGCCACTCAATTTGCTTTTAGGTGTAGGGGTGGATGACGTTCGCTTCATTGGGATATGGGGAATGGGCGGGATTGGTAAGACAACTATGGTAAGAGCGGTGTTTGAGAGAATCTCTCATGAATTTGAAGTTAGTTTCCTTCTTACTGATGTTAGAGAATCAGTTGAAAAAAGAGGTCTACTTAATCTACAAAAGCAACTTCTCTCTGGGATTTGGACAGAAGAGGCTAACATATCAGACCTTCATGAAGGAGCCACCATAATAAGGAGGTTGTTACGTCACACAAAAGTTCTTCTCATTCTTGATGATGTGAACCATTCAAGCCATTTAAAATTTTTGGCAGGAAACCAAGAGTGGTTTGGTTCAGGGAGTAGAGTTCTTATCACAACTAGATATGAGCATTTGTTGATTGAACATAGAGTGGAGAGAAGATTGAAGATCAAAGAATTCAATGATGAGGATTCTCTTCAGCTTTTCAGCTTGAAAGCATTCAAAGGAGGTCACCCTGAAAAAGATTTTCTTGAGTTGTCTAAATCTGTTATAAATTATGCCAAAGGTCTCCCTTTAGCTCTTGAAGTACTGGGTTCTTTATTGCGTGGAAGAGATCTAAGTGGATGGAACAGTGCATTAAGAAAACTAGGAAGAAATTGCAACTTGGAAATTTTTTGCATACTTAAAACAAGTTTTGATGATCTAGATGATGAAGAGAAGAAAATATTCCTAGACATTGCATGTTTCTTTTGCGGAGAGAAAAAAGATCGGGTATCAAAAGTATTGATCGGTTGTGATGTTTCTGCAATTTCTGGAATAGATGCTCTCACCGAAAGATCTCTCTTGACTGTTTCATATGGAAGACTACGAATGCACGATTTGCTCCAAAAAATGGGTCGGGAAATTGTCCGCCGGGAATCTACTAATGAGCCAGGCAGGCGCAGCAGGTTATGGGTTCCTGAAGACGTCAAACATGTCTTGACCAAAAATACTGGAACTGAAGCAATAGAAGGCATTGTTCTCAACTCAAGTGAACCTGGAGTAAAGGTGGACGTGAATGCTAAATCATTTTCGATGATGAACAAATTGAGATACCTTATCATTAAGAATGGGAACCTATCAAATGGGCTTGAATGTCTTCCTAATAGTTTACAGATTCTTGAATGGACCGGATATCCCTTGAAATCTCTCCCATCGCATTTCAACCCAGAGAAGCTACTAGAACTGAACATGTGCCATAGTTGCATCAAACATTTTCTGTTGGGAATAAAGCCTTTATACAGGTTGAAAACCATTAAACTCAGCAACTCTTTGAATCTTGTCAACACCCCAAACTTTCAAGGTATGCCATATCTTGAGCTTCTGTTTCTTGATGGTTGTACAAGATTGTGTGAGGTTGACCCAGGGATTGAAGTGCTTGAAAAACTTACTTTGCTGAACTTGAAAGATTGCAAGAATCTCGTGCATTTTGCAAGCAGTGTACGTGGCTTAAAATCTCTCAAAGTTCTTAATCTTTCTGGTTGCTCAAAGCTTAAGAAACTACCGAATGACATGGGTCATTTAGAAAGTTTGGAGGAGCTTCATGTGAATGGCTCTGGCATAAGAGAACTACCTTCCTCTGTTGGAATGCTTGAAAGACTTCCTCTGCTGAAAATGAAAGATTGCAAAGATCTCGTGTGTCTTCCAACTAGTATCGGTGGCTTAAAATCTCTCAAAGTTATTAATATATCTGGTTGCTCAAAGCTTGACAAATTGCCCGAGGAGTTGGGCCATCTGGAGTGTTTGGTAGAAGTTGATGCGAGTGGAACTTCTATACGAGAACTACCTTGCTCTATGGGCATGCTTGAAAGACTTGTTTCTTTGTCCTTGAGAGATTGCAAACATCTTGTGTGTCTTCCAAGCAGTGCAGGTGGCTTAAAATCTCTCAAGGATCTCAATCTTTCTGGTTGCTCAAAGCTTGATAAATTGCCAAATGAGTTGGGTTTTGTTGCCTGTATGGAGAAGCTTGATGCGAGTGGAAGTGGCATAAGAGAAGTGCCCTTCTCTATTGGTCTTTTGAAAAACCTCAAAGAATTATCTTTTGGTGGTTGTAAAGAACAGTCACGTAAATCGTGGAATATGATGTTCAACTCCCTTCAGTTTTTGCGAAAAACAAGTTGCATTCCAGCAGGATTGTTATCTGGTTTGCGTTCAGTAACTAAACTGGATCTAAGTGACTGCAATCTTTCTGAAGAATCAATCCCCAGTGATTTTGGATGCTTAGCCTCATTGAGAAGTTTAAATTTGAGCAAAAATCAATTTGTTACACTCCCCGAGAGCATTGGCCAACTCTATAGACTTAAATATCTTTACTTGGATTGGTGCTGCAAGCTTCGGACGTTACCAGACCTTCCATCTCATGTATGGGTAAACGTAAGCAACTGCTTTTCATTAGATACATTGTCCAATCCAATAGGTCAAACCAATGCGGTGCTAGAAGCAACATGTGTTAACTGTTTCAGACTGGTGAAGAATGAAAGATATAAGAGTACAGCACTTTCATTGCTAACACGCTACCTGAAGATTCAACATTGTGGTTCTTCCGTACATTTTAAAGAAGCTAGATTTCACTTTGTTGCTCCTGGAAATGAAATTCCAGAGTGGTACAATTACCAAAGAGTGGGGTCTTCGATAACTGTACGGCTGCATCCAGGTTGGTTTAGTGACAAGTTTATGGGATTCGCCTTGTGTGTTGTTTTTAGACTCCTGAAACCACTCCCGCCTTTGGCTGAGTGGTCCATTAATCGCTCACTGAGGGTCAATGGACAATTCTTGGAGCCTTTTGGTATATTGTTTGGGGGAAAATGGGGTCAACCTGTGTCAGATCACATTTGGTTCTTCTATGTGCACCGTGATGAATACTATAAACAAGTGTGGCAGGATATCTACTATGAGCTTGTATTCTCATTTAAATCCATCCATAAGGTGGAAAAATTCGGTGATGAAATTGTGCAAGTGAAGAAATGCGGGGTCCGTATGATATATGAGGGGGATATTGAGGAGCTTTGGGAAACATTATTTAAGCAGAGCAATACCAAGCGAGGCCTTCAACACTACTATGATGATGATGATGCAGCATCAAGTTGTACTGGCAATACCAAGCGAGGCCTTCAACACTACTATGATGATGATGATGCAGCCTTTAGTAGTACTGGTACCGGTGCAAGTCAGGAAGAGGAAGAAGAACCTCATCCAAAAAGATTTAAACGACTTGAGCTTTACGGAGCAGGACCTAGTGACCAGAAACATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

1289

Amino Acids

146.3

Weight (kDa)

8.29

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 11 - 182 5.8e-56 TIR domain
TIR_2 PF13676 14 - 119 4.2e-13 TIR domain
NB-ARC PF00931 207 - 360 2.1e-19 NB-ARC domain
WHD_ROQ1 PF23282 429 - 499 3.5e-19 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 664 - 769 5.3e-14 Leucine-rich repeat region
LRR_13 PF23286 689 - 774 3.4e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_13 PF23286 760 - 847 7.4e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 773 - 840 4.4e-09 Leucine-rich repeat region
LRR_14 PF23598 831 - 927 1.6e-06 Leucine-rich repeat region
LRR_13 PF23286 850 - 1027 4.1e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 927 - 987 4.7e-06 Leucine-rich repeat region
C-JID PF20160 1066 - 1204 3e-19 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17680 AT5G17680
fragaria_vesca FvH4_1g04740 FvH4_1g04740 FvH4_1g04740 FvH4_1g07010 FvH4_1g07020 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11580 FvH4_1g17862 FvH4_1g22370 FvH4_1g22372 FvH4_1g22377 FvH4_1g22512 FvH4_2g00540 FvH4_2g00541 FvH4_2g00550 FvH4_2g00950 FvH4_2g14320 FvH4_2g14320 FvH4_2g14321 FvH4_3g33030 FvH4_3g33030 FvH4_3g33030 FvH4_3g35620 FvH4_3g35630 FvH4_3g36130 FvH4_3g36131 FvH4_3g36140 FvH4_5g02251 FvH4_6g04060 FvH4_6g04250 FvH4_6g04250 FvH4_6g04250 FvH4_6g04350 FvH4_6g04730 FvH4_6g04730 FvH4_6g05490 FvH4_6g05610 FvH4_6g05610 FvH4_7g12160 FvH4_7g12160 FvH4_7g12160 FvH4_7g21060 FvH4_7g21060 FvH4_7g21060 FvH4_7g21070 FvH4_7g21140 FvH4_7g21140 FvH4_7g21140 FvH4_7g21140 FvH4_7g21140 FvH4_7g21140 FvH4_7g21150 FvH4_7g21170 FvH4_7g21170 FvH4_7g21171 FvH4_7g21172 FvH4_7g21180 FvH4_7g21201 FvH4_7g21201 FvH4_7g21230 FvH4_7g21230 FvH4_7g21230 FvH4_7g28631 FvH4_7g32440 FvH4_7g32460 FvH4_7g32464 FvH4_7g32470 FvH4_7g32480 FvH4_7g32710 FvH4_7g32720 FvH4_7g32740 FvH4_7g32740 FvH4_7g32740 FvH4_7g32760 FvH4_7g33140
malus_domestica MD00G1125900.v1.1 MD00G1126000.v1.1 MD00G1126100.v1.1 MD04G1054900.v1.1 MD05G1007000.v1.1 MD05G1018900.v1.1 MD05G1019700.v1.1 MD05G1020000.v1.1 MD05G1020100.v1.1 MD05G1022400.v1.1 MD05G1022500.v1.1 MD05G1022600.v1.1 MD05G1022800.v1.1 MD05G1028700.v1.1 MD05G1100200.v1.1 MD08G1021900.v1.1 MD10G1006500.v1.1 MD10G1006900.v1.1 MD10G1007200.v1.1 MD10G1007600.v1.1 MD10G1015300.v1.1 MD10G1018400.v1.1 MD10G1018500.v1.1 MD10G1018900.v1.1 MD10G1019200.v1.1 MD10G1019700.v1.1 MD10G1020000.v1.1 MD10G1020100.v1.1 MD10G1020900.v1.1 MD10G1021000.v1.1 MD10G1034300.v1.1 MD10G1034400.v1.1 MD10G1034700.v1.1 MD10G1034800.v1.1 MD10G1035000.v1.1 MD10G1035400.v1.1 MD10G1232400.v1.1 MD15G1377300.v1.1 MD15G1377400.v1.1
prunus_persica Prupe.1G165300_v2.0.a1 Prupe.1G165300_v2.0.a1 Prupe.1G523900_v2.0.a1 Prupe.1G524000_v2.0.a1 Prupe.1G526300_v2.0.a1 Prupe.2G059000_v2.0.a1 Prupe.2G059000_v2.0.a1 Prupe.2G059000_v2.0.a1 Prupe.2G059000_v2.0.a1 Prupe.3G169500_v2.0.a1 Prupe.6G109800_v2.0.a1 Prupe.7G026100_v2.0.a1 Prupe.7G037000_v2.0.a1 Prupe.7G037000_v2.0.a1 Prupe.7G037600_v2.0.a1 Prupe.8G005100_v2.0.a1 Prupe.8G005300_v2.0.a1 Prupe.8G021700_v2.0.a1 Prupe.8G022800_v2.0.a1 Prupe.8G023100_v2.0.a1 Prupe.8G023200_v2.0.a1 Prupe.8G023200_v2.0.a1 Prupe.8G023300_v2.0.a1 Prupe.8G023500_v2.0.a1 Prupe.8G023600_v2.0.a1 Prupe.8G023700_v2.0.a1 Prupe.8G023700_v2.0.a1 Prupe.8G023700_v2.0.a1 Prupe.8G023800_v2.0.a1 Prupe.8G023800_v2.0.a1 Prupe.8G023800_v2.0.a1 Prupe.8G023900_v2.0.a1 Prupe.8G026500_v2.0.a1 Prupe.8G026500_v2.0.a1 Prupe.8G026700_v2.0.a1 Prupe.8G026700_v2.0.a1 Prupe.8G026800_v2.0.a1 Prupe.8G026800_v2.0.a1 Prupe.8G026800_v2.0.a1 Prupe.8G026800_v2.0.a1 Prupe.8G027000_v2.0.a1 Prupe.8G027100_v2.0.a1 Prupe.8G027300_v2.0.a1 Prupe.8G027300_v2.0.a1 Prupe.8G027300_v2.0.a1 Prupe.8G032000_v2.0.a1 Prupe.8G034700_v2.0.a1 Prupe.8G046500_v2.0.a1 Prupe.8G046700_v2.0.a1 Prupe.8G056700_v2.0.a1 Prupe.8G056700_v2.0.a1 Prupe.8G056700_v2.0.a1
pyrus_communis pycom05g01130 pycom05g01150 pycom05g01160 pycom05g01330 pycom05g01340 pycom05g01350 pycom05g01360 pycom05g01390 pycom05g01400 pycom05g01420 pycom05g01430 pycom10g00470 pycom10g00970 pycom10g00980 pycom10g00990 pycom10g01000 pycom10g01340 pycom10g01350 pycom10g01360 pycom10g01390 pycom10g01400 pycom10g01410 pycom10g01420 pycom10g01430 pycom10g02280 pycom10g02300 pycom10g02310 pycom10g02330 pycom10g02340 pycom10g02370 pycom10g02390 pycom10g02400 pycom12g00770 pycom15g33690 pycom15g33720 pycom15g33740 pycom15g33750 pycom15g33800
rosa_chinensis RchiOBHm_Chr1g0340831 RchiOBHm_Chr1g0365481 RchiOBHm_Chr1g0365531 RchiOBHm_Chr1g0365541 RchiOBHm_Chr1g0365551 RchiOBHm_Chr1g0365561 RchiOBHm_Chr1g0365641 RchiOBHm_Chr1g0382021 RchiOBHm_Chr1g0382041 RchiOBHm_Chr1g0382221 RchiOBHm_Chr1g0382261 RchiOBHm_Chr1g0382271 RchiOBHm_Chr1g0382281 RchiOBHm_Chr1g0382321 RchiOBHm_Chr3g0465111 RchiOBHm_Chr3g0481881 RchiOBHm_Chr3g0481891 RchiOBHm_Chr3g0481981 RchiOBHm_Chr3g0482041 RchiOBHm_Chr5g0055581 RchiOBHm_Chr5g0060381 RchiOBHm_Chr5g0061111 RchiOBHm_Chr5g0063811 RchiOBHm_Chr5g0064561 RchiOBHm_Chr5g0064571 RchiOBHm_Chr5g0064661 RchiOBHm_Chr5g0064701 RchiOBHm_Chr5g0064731 RchiOBHm_Chr5g0064871 RchiOBHm_Chr6g0245321 RchiOBHm_Chr6g0245331 RchiOBHm_Chr6g0245341 RchiOBHm_Chr6g0245481 RchiOBHm_Chr6g0245501 RchiOBHm_Chr6g0245551 RchiOBHm_Chr6g0246391 RchiOBHm_Chr6g0246501 RchiOBHm_Chr6g0246541 RchiOBHm_Chr6g0246601 RchiOBHm_Chr6g0246671 RchiOBHm_Chr6g0246721 RchiOBHm_Chr6g0246751 RchiOBHm_Chr6g0246861 RchiOBHm_Chr6g0246881 RchiOBHm_Chr6g0246891 RchiOBHm_Chr6g0249221 RchiOBHm_Chr6g0249691 RchiOBHm_Chr6g0249721 RchiOBHm_Chr6g0249731 RchiOBHm_Chr6g0249751 RchiOBHm_Chr6g0249841 RchiOBHm_Chr6g0249881 RchiOBHm_Chr6g0249921 RchiOBHm_Chr6g0249931 RchiOBHm_Chr6g0249951 RchiOBHm_Chr6g0250011 RchiOBHm_Chr6g0250021 RchiOBHm_Chr6g0250081 RchiOBHm_Chr6g0250091 RchiOBHm_Chr6g0250131 RchiOBHm_Chr6g0250161 RchiOBHm_Chr6g0250201 RchiOBHm_Chr6g0250241 RchiOBHm_Chr6g0250291 RchiOBHm_Chr6g0250301 RchiOBHm_Chr6g0250371 RchiOBHm_Chr6g0250771 RchiOBHm_Chr6g0250981 RchiOBHm_Chr6g0251301 RchiOBHm_Chr6g0251321 RchiOBHm_Chr6g0251341 RchiOBHm_Chr6g0251441 RchiOBHm_Chr6g0251471 RchiOBHm_Chr6g0272741 RchiOBHm_Chr6g0276581 RchiOBHm_Chr6g0276591 RchiOBHm_Chr6g0276631 RchiOBHm_Chr6g0284581 RchiOBHm_Chr6g0284641 RchiOBHm_Chr6g0285091 RchiOBHm_Chr7g0217981
rosa_laevigata RLG00000002427 RLG00000003507 RLG00000008496 RLG00000012678 RLG00000012735 RLG00000012736 RLG00000013083 RLG00000013084 RLG00000013384 RLG00000013386 RLG00000013660 RLG00000015037 RLG00000015242 RLG00000015253 RLG00000015255 RLG00000015256 RLG00000015259 RLG00000015307 RLG00000015465 RLG00000015466 RLG00000015504 RLG00000015506 RLG00000015507 RLG00000015510 RLG00000015513 RLG00000015544 RLG00000015545 RLG00000015549 RLG00000015550 RLG00000015552 RLG00000016855 RLG00000016858 RLG00000016859 RLG00000018281 RLG00000018283 RLG00000022622 RLG00000023379 RLG00000023937 RLG00000024655 RLG00000026187 RLG00000026189 RLG00000026190 RLG00000026191 RLG00000026192 RLG00000027420 RLG00000027421 RLG00000027661 RLG00000028903 RLG00000028904 RLG00000030248 RLG00000035359 RLG00000035360 RLG00000035361 RLG00000035429 RLG00000035456 RLG00000035679 RLG00000035680 RLG00000035681 RLG00000035735 RLG00000035738 RLG00000035844 RLG00000036364
rosa_multiflora Rmu_co8335069.1_g000001 Rmu_co8396115.1_g000001 Rmu_co8448557.1_g000001 Rmu_co8510855.1_g000001 Rmu_sc0000110.1_g000004 Rmu_sc0000110.1_g000007 Rmu_sc0000110.1_g000018 Rmu_sc0000110.1_g000019 Rmu_sc0000110.1_g000022 Rmu_sc0000110.1_g000023 Rmu_sc0000110.1_g000033 Rmu_sc0000110.1_g000037 Rmu_sc0000110.1_g000039 Rmu_sc0000276.1_g000031 Rmu_sc0000276.1_g000034 Rmu_sc0000411.1_g000006 Rmu_sc0000411.1_g000007 Rmu_sc0000452.1_g000027 Rmu_sc0000471.1_g000009 Rmu_sc0000507.1_g000020 Rmu_sc0000694.1_g000018 Rmu_sc0000701.1_g000002 Rmu_sc0000701.1_g000009 Rmu_sc0000701.1_g000010 Rmu_sc0000704.1_g000001 Rmu_sc0000704.1_g000042 Rmu_sc0000704.1_g000043 Rmu_sc0000969.1_g000002 Rmu_sc0001001.1_g000003 Rmu_sc0001066.1_g000004 Rmu_sc0001066.1_g000019 Rmu_sc0001209.1_g000023 Rmu_sc0001209.1_g000040 Rmu_sc0001209.1_g000043 Rmu_sc0001237.1_g000018 Rmu_sc0001246.1_g000016 Rmu_sc0001293.1_g000008 Rmu_sc0001293.1_g000011 Rmu_sc0001293.1_g000022 Rmu_sc0001293.1_g000023 Rmu_sc0001373.1_g000014 Rmu_sc0001382.1_g000001 Rmu_sc0001738.1_g000024 Rmu_sc0002025.1_g000009 Rmu_sc0002025.1_g000012 Rmu_sc0002025.1_g000013 Rmu_sc0002093.1_g000004 Rmu_sc0002202.1_g000008 Rmu_sc0002202.1_g000010 Rmu_sc0002202.1_g000011 Rmu_sc0002202.1_g000018 Rmu_sc0002406.1_g000014 Rmu_sc0002478.1_g000003 Rmu_sc0002535.1_g000042 Rmu_sc0002587.1_g000021 Rmu_sc0002587.1_g000023 Rmu_sc0002587.1_g000028 Rmu_sc0002587.1_g000039 Rmu_sc0002587.1_g000044 Rmu_sc0002587.1_g000048 Rmu_sc0002587.1_g000049 Rmu_sc0002793.1_g000005 Rmu_sc0003060.1_g000003 Rmu_sc0003060.1_g000004 Rmu_sc0003060.1_g000005 Rmu_sc0003131.1_g000001 Rmu_sc0003131.1_g000032 Rmu_sc0003255.1_g000009 Rmu_sc0003255.1_g000017 Rmu_sc0003270.1_g000028 Rmu_sc0003293.1_g000004 Rmu_sc0003293.1_g000008 Rmu_sc0003293.1_g000010 Rmu_sc0003352.1_g000009 Rmu_sc0003352.1_g000012 Rmu_sc0003386.1_g000012 Rmu_sc0003387.1_g000003 Rmu_sc0003387.1_g000007 Rmu_sc0003665.1_g000002 Rmu_sc0003811.1_g000001 Rmu_sc0004049.1_g000001 Rmu_sc0004191.1_g000039 Rmu_sc0004691.1_g000008 Rmu_sc0005257.1_g000014 Rmu_sc0005257.1_g000020 Rmu_sc0005685.1_g000005 Rmu_sc0006032.1_g000010 Rmu_sc0006638.1_g000016 Rmu_sc0006878.1_g000005 Rmu_sc0007049.1_g000005 Rmu_sc0007049.1_g000011 Rmu_sc0007049.1_g000012 Rmu_sc0007049.1_g000013 Rmu_sc0007049.1_g000014 Rmu_sc0007383.1_g000001 Rmu_sc0007383.1_g000005 Rmu_sc0007383.1_g000012 Rmu_sc0007558.1_g000003 Rmu_sc0007558.1_g000005 Rmu_sc0007722.1_g000001 Rmu_sc0008209.1_g000002 Rmu_sc0008209.1_g000008 Rmu_sc0008242.1_g000013 Rmu_sc0008965.1_g000001 Rmu_sc0009002.1_g000002 Rmu_sc0009002.1_g000006 Rmu_sc0009002.1_g000007 Rmu_sc0009002.1_g000010 Rmu_sc0009002.1_g000011 Rmu_sc0009227.1_g000011 Rmu_sc0009369.1_g000008 Rmu_sc0009380.1_g000013 Rmu_sc0009451.1_g000011 Rmu_sc0009952.1_g000008 Rmu_sc0009991.1_g000004 Rmu_sc0010993.1_g000005 Rmu_sc0010993.1_g000006 Rmu_sc0012343.1_g000012 Rmu_sc0014236.1_g000002 Rmu_sc0014912.1_g000002 Rmu_sc0014912.1_g000003 Rmu_sc0019669.1_g000001 Rmu_sc0020903.1_g000007 Rmu_sc0021230.1_g000001 Rmu_sc0022147.1_g000001 Rmu_sc0028629.1_g000002 Rmu_sc0031029.1_g000001 Rmu_sc0038922.1_g000001 Rmu_sc0039683.1_g000001 Rmu_sc0039712.1_g000001 Rmu_sc0043027.1_g000001 Rmu_ssc0000009.1_g000002 Rmu_ssc0000009.1_g000004 Rmu_ssc0000309.1_g000010
rosa_roxburghii Rroxscaffold_1G00014850 Rroxscaffold_1G00016420 Rroxscaffold_1G00016430 Rroxscaffold_1G00016970 Rroxscaffold_1G00016980 Rroxscaffold_1G00017020 Rroxscaffold_2G00103000 Rroxscaffold_2G00103010 Rroxscaffold_2G00121260 Rroxscaffold_2G00127090 Rroxscaffold_2G00127120 Rroxscaffold_2G00143350 Rroxscaffold_2G00143360 Rroxscaffold_3G00218090 Rroxscaffold_3G00232940 Rroxscaffold_3G00241540 Rroxscaffold_3G00241550 Rroxscaffold_4G00278190 Rroxscaffold_4G00278220 Rroxscaffold_4G00278240 Rroxscaffold_4G00278260 Rroxscaffold_4G00291120 Rroxscaffold_4G00291140 Rroxscaffold_4G00291150 Rroxscaffold_4G00291160 Rroxscaffold_4G00291180 Rroxscaffold_4G00291220 Rroxscaffold_4G00294350 Rroxscaffold_4G00304090 Rroxscaffold_4G00309820 Rroxscaffold_4G00314470 Rroxscaffold_6G00392280 Rroxscaffold_6G00399770 Rroxscaffold_6G00399780 Rroxscaffold_6G00399800 Rroxscaffold_6G00400110 Rroxscaffold_6G00400130 Rroxscaffold_6G00415240 Rroxscaffold_7G00183750 Rroxscaffold_7G00184040 Rroxscaffold_7G00184570 Rroxscaffold_7G00184580 Rroxscaffold_7G00192150 Rroxscaffold_7G00192460 Rroxscaffold_7G00196030 Rroxscaffold_7G00211080 Rroxscaffold_7G00214480 Rroxscaffold_7G00214490 Rroxscaffold_7G00214570 Rroxscaffold_7G00214580 Rroxscaffold_7G00214590 Rroxscaffold_7G00214610 Rroxscaffold_7G00214620 Rroxscaffold_7G00214790 Rroxscaffold_7G00216630 Rroxscaffold_7G00216640 Rroxscaffold_7G00216670 Rroxscaffold_7G00216680 Rroxscaffold_7G00216690 Rroxscaffold_7G00216730 Rroxscaffold_7G00216770 Rroxscaffold_7G00216780 Rroxscaffold_7G00216820 Rroxscaffold_7G00216830 Rroxscaffold_7G00217280 Rroxscaffold_7G00217310 Rroxscaffold_7G00217320 Rroxscaffold_7G00217330
rosa_rugosa Rorug01G0040400 Rorug01G0173300 Rorug01G0173400 Rorug01G0296100 Rorug01G0296200 Rorug01G0296300 Rorug01G0296400 Rorug01G0322300 Rorug01G0432900 Rorug01G0433100 Rorug01G0433200 Rorug01G0433500 Rorug02G0054900 Rorug02G0077900 Rorug02G0078000 Rorug02G0078100 Rorug02G0207300 Rorug02G0242200 Rorug02G0242300 Rorug03G0075500 Rorug03G0075500 Rorug03G0194300 Rorug05G0329100 Rorug05G0329300 Rorug05G0360000 Rorug05G0360000 Rorug05G0360300 Rorug05G0360400.1 Rorug05G0360500 Rorug05G0364200 Rorug05G0366200 Rorug05G0366300 Rorug05G0366400 Rorug05G0366600 Rorug05G0376400 Rorug05G0376500 Rorug05G0421100 Rorug05G0494600 Rorug05G0494800 Rorug05G0494900 Rorug05G0495100 Rorug05G0495200 Rorug05G0495900 Rorug05G0498200 Rorug05G0498200 Rorug05G0498300.1 Rorug05G0499100 Rorug05G0501700 Rorug05G0501800 Rorug05G0501900 Rorug05G0513800 Rorug05G0514100 Rorug05G0514200 Rorug05G0514200 Rorug05G0514500 Rorug05G0519200 Rorug05G0519300.1 Rorug05G0519400 Rorug05G0519400 Rorug05G0520600 Rorug05G0520700 Rorug05G0520800 Rorug05G0521300 Rorug05G0521400 Rorug05G0521500 Rorug05G0550800 Rorug06G0070400 Rorug06G0070500 Rorug06G0070600 Rorug06G0099500 Rorug06G0099600 Rorug06G0102100 Rorug06G0102200 Rorug06G0102300 Rorug06G0102300 Rorug06G0102400 Rorug06G0162500 Rorug06G0164500 Rorug06G0164600 Rorug06G0164800 Rorug06G0170600 Rorug07G0172900 Rorug07G0172900 Rorug07G0172900 Rorug07G0173000
rosa_samantha Rh1BG156400 Rh1BG156500 Rh1BG156600 Rh1BG292400 Rh1BG413500 Rh1BG413800 Rh1BG414100 Rh1BG414200 Rh1BG414400 Rh1CG059400 Rh1CG309000 Rh1CG428300 Rh1CG428400 Rh2BG129800 Rh2BG273700 Rh2CG131000 Rh2DG131300 Rh3AG245200 Rh3AG245600 Rh3BG139100 Rh3BG280400 Rh3BG280500 Rh3CG141200 Rh3CG149500 Rh3CG275400 Rh3CG275800 Rh3CG276500 Rh3CG276800 Rh3DG140400 Rh3DG272100 Rh3DG272300 Rh3DG272400 Rh3DG272700 Rh3DG272800 Rh3DG272900 Rh5AG099100 Rh5AG424200 Rh5AG435200 Rh5BG411900 Rh5BG439500 Rh5CG108000 Rh5CG436900 Rh5CG457800 Rh5CG462200 Rh5CG462300 Rh6AG033600 Rh6AG186700 Rh6BG190100 Rh6BG215300 Rh6BG217600 Rh6BG217800 Rh6CG188800 Rh6CG284800 Rh6DG003400 Rh6DG008400 Rh6DG008700 Rh6DG008800 Rh6DG009100 Rh6DG009400 Rh6DG025100 Rh6DG180300 Rh6DG209700 Rh6DG210100 Rh6DG272100 Rh6DG272300 Rh6DG273000 Rh7BG305400
rosa_wichuraiana Rw0G010970 Rw0G011460 Rw0G017090 Rw0G023140 Rw1G007890 Rw1G010200 Rw1G015630 Rw1G015640 Rw1G029350 Rw1G029370 Rw1G029380 Rw1G029390 Rw1G029400 Rw1G041290 Rw1G041560 Rw2G009760 Rw2G009770 Rw2G020640 Rw2G021670 Rw2G021690 Rw2G024060 Rw3G011380 Rw3G021890 Rw3G021910 Rw3G021940 Rw3G021950 Rw3G021960 Rw5G037070 Rw5G037080 Rw5G037090 Rw5G039330 Rw5G039890 Rw5G039900 Rw5G039920 Rw5G040740 Rw6G000500 Rw6G000510 Rw6G000520 Rw6G000550 Rw6G000570 Rw6G000580 Rw6G000610 Rw6G000820 Rw6G001070 Rw6G001090 Rw6G001100 Rw6G001170 Rw6G001180 Rw6G001260 Rw6G001270 Rw6G001280 Rw6G001300 Rw6G002450 Rw6G002470 Rw6G002500 Rw6G002830 Rw6G002870 Rw6G003000 Rw6G003080 Rw6G016110 Rw6G018400 Rw6G018590 Rw6G018610 Rw6G023840 Rw6G023880 Rw6G024250 Rw6G024260 Rw7G026620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1127
AarI CACCTGC 1 cut(s) 2474
AatII GACGTC 1 cut(s) 1545
Acc36I ACCTGC 2 cut(s) 1512, 2474
Acc65I GGTACC 1 cut(s) 3770
AccB1I GGYRCC 1 cut(s) 3770
AccB7I CCANNNNNTGG 4 cut(s) 471, 1468, 3235, 3541
AccBSI CCGCTC 1 cut(s) 683
AccI GTMKAC 1 cut(s) 763
AciI CCGC 7 cut(s) 654, 683, 1329, 1486, 3044, 3335, 3582
AclWI GGATC 5 cut(s) 114, 131, 317, 2514, 2790
AcoI YGGCCR 1 cut(s) 2899
AcsI RAATTY 9 cut(s) 267, 567, 707, 917, 1031, 1245, 2857, 3207, 3548
AcuI CTGAAG 6 cut(s) 1037, 1557, 1596, 2696, 2826, 3155
AcyI GRCGYC 1 cut(s) 1542
AfiI CCNNNNNNNGG 6 cut(s) 471, 849, 1468, 3235, 3340, 3541
AflII CTTAAG 1 cut(s) 2108
AflIII ACRYGT 3 cut(s) 1549, 1806, 3059
AgeI ACCGGT 1 cut(s) 3773
AhlI ACTAGT 1 cut(s) 2264
AjiI CACGTC 1 cut(s) 1630
AjnI CCWGG 5 cut(s) 1507, 1612, 1978, 3196, 3265
AjuI GAANNNNNNNTTGG 2 cut(s) 2640, 2672
AleI CACNNNNGTG 1 cut(s) 25
Alw21I GWGCWC 2 cut(s) 492, 3465
Alw26I GTCTC 1 cut(s) 1148
Alw44I GTGCAC 1 cut(s) 3461
AlwI GGATC 5 cut(s) 114, 131, 317, 2514, 2790
Ama87I CYCGRG 2 cut(s) 2333, 2888
AoxI GGCC 4 cut(s) 2344, 2899, 3658, 3721
ApaLI GTGCAC 1 cut(s) 3461
ApeKI GCWGC 8 cut(s) 182, 301, 586, 1518, 2940, 3259, 3689, 3752
ApoI RAATTY 9 cut(s) 267, 567, 707, 917, 1031, 1245, 2857, 3207, 3548
ArsI GACNNNNNNTTYG 2 cut(s) 1456, 1488
AseI ATTAAT 2 cut(s) 2298, 3357
AsiGI ACCGGT 1 cut(s) 3773
Asp700I GAANNNNTTC 4 cut(s) 1073, 1301, 1713, 2214
Asp718I GGTACC 1 cut(s) 3770
AspLEI GCGC 1 cut(s) 1518
AspS9I GGNCC 5 cut(s) 1743, 2344, 3351, 3586, 3845
AsuC2I CCSGG 1 cut(s) 1490
AsuHPI GGTGA 5 cut(s) 12, 1079, 1396, 3094, 3566
AvaI CYCGRG 2 cut(s) 2333, 2888
AvaII GGWCC 4 cut(s) 1743, 3351, 3586, 3845
BaeGI GKGCMC 2 cut(s) 2616, 3465
BalI TGGCCA 1 cut(s) 2901
BanI GGYRCC 1 cut(s) 3770
BanII GRGCYC 1 cut(s) 492
BauI CACGAG 2 cut(s) 2036, 2249
BbsI GAAGAC 6 cut(s) 1444, 1545, 1706, 2249, 2462, 3234
Bbv12I GWGCWC 2 cut(s) 492, 3465
BbvI GCAGC 8 cut(s) 169, 288, 598, 1530, 2927, 3246, 3701, 3764
BccI CCATC 6 cut(s) 1194, 1777, 1943, 2355, 2977, 3539
BceAI ACGGC 1 cut(s) 3272
BcgI CGANNNNNNTGC 4 cut(s) 2017, 2051, 2230, 2264
BciT130I CCWGG 5 cut(s) 1509, 1614, 1980, 3198, 3267
BcnI CCSGG 1 cut(s) 1490
BcoDI GTCTC 1 cut(s) 1148
BcuI ACTAGT 1 cut(s) 2264
BfmI CTRYAG 3 cut(s) 183, 584, 2908
BfrI CTTAAG 1 cut(s) 2108
BfuAI ACCTGC 2 cut(s) 1512, 2474
BglI GCCNNNNNGGC 1 cut(s) 1513
BglII AGATCT 3 cut(s) 1189, 1412, 2245
BisI GCNGC 8 cut(s) 183, 302, 587, 1519, 2941, 3260, 3690, 3753
BlpI GCTNAGC 1 cut(s) 2836
BlsI GCNGC 8 cut(s) 184, 303, 588, 1520, 2942, 3261, 3691, 3754
BmcAI AGTACT 2 cut(s) 1164, 3766
Bme1390I CCNGG 6 cut(s) 1490, 1509, 1614, 1980, 3198, 3267
Bme18I GGWCC 4 cut(s) 1743, 3351, 3586, 3845
BmeT110I CYCGRG 2 cut(s) 2333, 2888
BmgBI CACGTC 1 cut(s) 1630
BmgT120I GGNCC 5 cut(s) 1743, 2344, 3351, 3586, 3845
BmiI GGNNCC 6 cut(s) 838, 1533, 1691, 3393, 3587, 3772
BmrFI CCNGG 6 cut(s) 1490, 1509, 1614, 1980, 3198, 3267
BmrI ACTGGG 2 cut(s) 1175, 2814
BmuI ACTGGG 2 cut(s) 1175, 2814
BoxI GACNNNNGTC 1 cut(s) 2130
BpiI GAAGAC 6 cut(s) 1444, 1545, 1706, 2249, 2462, 3234
BplI GAGNNNNNCTC 4 cut(s) 683, 715, 685, 717
BpmI CTGGAG 3 cut(s) 153, 1635, 2372
Bpu1102I GCTNAGC 1 cut(s) 2836
BpuEI CTTGAG 6 cut(s) 1127, 1588, 1952, 2464, 2486, 3848
BpuMI CCSGG 1 cut(s) 1490
BsaAI YACGTR 2 cut(s) 2060, 2681
BsaBI GATNNNNATC 4 cut(s) 141, 321, 2511, 2752
BsaHI GRCGYC 1 cut(s) 1542
BsaI GGTCTC 1 cut(s) 1148
BsaJI CCNNGG 4 cut(s) 465, 1978, 1979, 2334
BsaWI WCCGGW 2 cut(s) 1745, 3773
BsaXI ACNNNNNCTCC 2 cut(s) 1608, 1638
Bsc4I CCNNNNNNNGG 6 cut(s) 471, 849, 1468, 3235, 3340, 3541
Bse118I RCCGGY 1 cut(s) 3773
Bse1I ACTGG 7 cut(s) 1170, 1573, 2784, 2820, 3084, 3709, 3772
Bse3DI GCAATG 2 cut(s) 1311, 3116
Bse8I GATNNNNATC 4 cut(s) 141, 321, 2511, 2752
BseBI CCWGG 5 cut(s) 1509, 1614, 1980, 3198, 3267
BseDI CCNNGG 4 cut(s) 465, 1978, 1979, 2334
BseGI GGATG 9 cut(s) 139, 259, 400, 625, 1205, 2837, 3262, 3531, 3805
BseJI GATNNNNATC 4 cut(s) 141, 321, 2511, 2752
BseLI CCNNNNNNNGG 6 cut(s) 471, 849, 1468, 3235, 3340, 3541
BseMI GCAATG 2 cut(s) 1311, 3116
BseMII CTCAG 4 cut(s) 38, 1891, 3336, 3359
BseNI ACTGG 7 cut(s) 1170, 1573, 2784, 2820, 3084, 3709, 3772
BseRI GAGGAG 3 cut(s) 2165, 2351, 3629
BseSI GKGCMC 2 cut(s) 2616, 3465
BseXI GCAGC 8 cut(s) 169, 288, 598, 1530, 2927, 3246, 3701, 3764
BsgI GTGCAG 1 cut(s) 2502
BshFI GGCC 4 cut(s) 2346, 2901, 3660, 3723
BshNI GGYRCC 1 cut(s) 3770
BshTI ACCGGT 1 cut(s) 3773
BsiHKAI GWGCWC 2 cut(s) 492, 3465
BsiHKCI CYCGRG 2 cut(s) 2333, 2888
BsiSI CCGG 3 cut(s) 1489, 1746, 3774
BslI CCNNNNNNNGG 6 cut(s) 471, 849, 1468, 3235, 3340, 3541
BsmAI GTCTC 1 cut(s) 1148
BsmI GAATGC 6 cut(s) 281, 1073, 1452, 1639, 2208, 2736
BsnI GGCC 4 cut(s) 2346, 2901, 3660, 3723
Bso31I GGTCTC 1 cut(s) 1148
BsoBI CYCGRG 2 cut(s) 2333, 2888
Bsp1286I GDGCHC 3 cut(s) 492, 2616, 3465
Bsp1407I TGTACA 1 cut(s) 1955
Bsp1720I GCTNAGC 1 cut(s) 2836
BspACI CCGC 7 cut(s) 654, 683, 1329, 1486, 3044, 3335, 3582
BspANI GGCC 4 cut(s) 2346, 2901, 3660, 3723
BspCNI CTCAG 4 cut(s) 37, 1890, 3337, 3360
BspHI TCATGA 3 cut(s) 376, 703, 829
BspLI GGNNCC 6 cut(s) 838, 1533, 1691, 3393, 3587, 3772
BspMAI CTGCAG 2 cut(s) 187, 588
BspMI ACCTGC 2 cut(s) 1512, 2474
BspPI GGATC 5 cut(s) 114, 131, 317, 2514, 2790
BspT107I GGYRCC 1 cut(s) 3770
BspTI CTTAAG 1 cut(s) 2108
BspTNI GGTCTC 1 cut(s) 1148
BsrBI CCGCTC 1 cut(s) 683
BsrDI GCAATG 2 cut(s) 1311, 3116
BsrFI RCCGGY 1 cut(s) 3773
BsrGI TGTACA 1 cut(s) 1955
BsrI ACTGG 7 cut(s) 1170, 1573, 2784, 2820, 3084, 3709, 3772
BssAI RCCGGY 1 cut(s) 3773
BssECI CCNNGG 4 cut(s) 465, 1978, 1979, 2334
BssNI GRCGYC 1 cut(s) 1542
BssSI CACGAG 2 cut(s) 2036, 2249
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 2 cut(s) 2036, 2249
Bst2UI CCWGG 5 cut(s) 1509, 1614, 1980, 3198, 3267
Bst4CI ACNGT 7 cut(s) 298, 1208, 1426, 2676, 3071, 3253, 3467
Bst6I CTCTTC 5 cut(s) 801, 1056, 1180, 1284, 3783
BstACI GRCGYC 1 cut(s) 1542
BstAFI CTTAAG 1 cut(s) 2108
BstAPI GCANNNNNTGC 2 cut(s) 179, 1456
BstAUI TGTACA 1 cut(s) 1955
BstBAI YACGTR 2 cut(s) 2060, 2681
BstC8I GCNNGC 5 cut(s) 531, 1514, 2050, 2417, 2945
BstDEI CTNAG 7 cut(s) 24, 1193, 1877, 2786, 2836, 3345, 3368
BstEII GGTNACC 1 cut(s) 1085
BstF5I GGATG 9 cut(s) 139, 259, 400, 625, 1205, 2837, 3262, 3531, 3805
BstHHI GCGC 1 cut(s) 1518
BstMAI GTCTC 1 cut(s) 1148
BstMWI GCNNNNNNNGC 6 cut(s) 179, 1456, 1513, 1518, 1818, 2412
BstNI CCWGG 5 cut(s) 1509, 1614, 1980, 3198, 3267
BstNSI RCATGY 5 cut(s) 1320, 1553, 1810, 2419, 3063
BstPAI GACNNNNGTC 1 cut(s) 2130
BstPI GGTNACC 1 cut(s) 1085
BstSCI CCNGG 6 cut(s) 1488, 1507, 1612, 1978, 3196, 3265
BstSFI CTRYAG 3 cut(s) 183, 584, 2908
BstSLI GKGCMC 2 cut(s) 2616, 3465
BstV1I GCAGC 8 cut(s) 169, 288, 598, 1530, 2927, 3246, 3701, 3764
BstV2I GAAGAC 6 cut(s) 1444, 1545, 1706, 2249, 2462, 3234
BstX2I RGATCY 5 cut(s) 1189, 1412, 2245, 2506, 2782
BstXI CCANNNNNNTGG 1 cut(s) 3863
BstYI RGATCY 5 cut(s) 1189, 1412, 2245, 2506, 2782
BsuRI GGCC 4 cut(s) 2346, 2901, 3660, 3723
BtgZI GCGATG 1 cut(s) 1755
BtrI CACGTC 1 cut(s) 1630
BtsCI GGATG 9 cut(s) 139, 259, 400, 625, 1205, 2837, 3262, 3531, 3805
BtsI GCAGTG 3 cut(s) 96, 2059, 2485
BtsIMutI CAGTG 7 cut(s) 32, 96, 1213, 2059, 2485, 2827, 3365
BveI ACCTGC 2 cut(s) 1512, 2474
Cac8I GCNNGC 5 cut(s) 531, 1514, 2050, 2417, 2945
CciI TCATGA 3 cut(s) 376, 703, 829
CfoI GCGC 1 cut(s) 1518
Cfr10I RCCGGY 1 cut(s) 3773
Cfr13I GGNCC 5 cut(s) 1743, 2344, 3351, 3586, 3845
CspAI ACCGGT 1 cut(s) 3773
CspCI CAANNNNNGTGG 2 cut(s) 579, 614
DdeI CTNAG 7 cut(s) 24, 1193, 1877, 2786, 2836, 3345, 3368
DraI TTTAAA 5 cut(s) 915, 2856, 3169, 3526, 3820
EaeI YGGCCR 1 cut(s) 2899
Eam1104I CTCTTC 5 cut(s) 801, 1056, 1180, 1284, 3783
EarI CTCTTC 5 cut(s) 801, 1056, 1180, 1284, 3783
EciI GGCGGA 1 cut(s) 1475
Ecl136II GAGCTC 1 cut(s) 490
Eco130I CCWWGG 1 cut(s) 465
Eco147I AGGCCT 2 cut(s) 3660, 3723
Eco24I GRGCYC 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 1148
Eco32I GATATC 2 cut(s) 1751, 3499
Eco47I GGWCC 4 cut(s) 1743, 3351, 3586, 3845
Eco53kI GAGCTC 1 cut(s) 490
Eco57I CTGAAG 6 cut(s) 1037, 1557, 1596, 2696, 2826, 3155
Eco88I CYCGRG 2 cut(s) 2333, 2888
Eco91I GGTNACC 1 cut(s) 1085
EcoICRI GAGCTC 1 cut(s) 490
EcoO109I RGGNCCY 1 cut(s) 3845
EcoO65I GGTNACC 1 cut(s) 1085
EcoRI GAATTC 2 cut(s) 267, 1031
EcoRII CCWGG 5 cut(s) 1507, 1612, 1978, 3196, 3265
EcoRV GATATC 2 cut(s) 1751, 3499
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 2 cut(s) 235, 281
EcoT38I GRGCYC 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 465
FalI AAGNNNNNCTT 2 cut(s) 1089, 1121
FauI CCCGC 3 cut(s) 647, 3342, 3575
FauNDI CATATG 1 cut(s) 1432
FblI GTMKAC 1 cut(s) 763
Fnu4HI GCNGC 8 cut(s) 183, 302, 587, 1519, 2941, 3260, 3690, 3753
FokI GGATG 9 cut(s) 146, 266, 407, 632, 1212, 2844, 3249, 3518, 3792
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 8 cut(s) 183, 302, 587, 1519, 2941, 3260, 3690, 3753
GlaI GCGC 1 cut(s) 1517
GluI GCNGC 8 cut(s) 183, 302, 587, 1519, 2941, 3260, 3690, 3753
GsuI CTGGAG 3 cut(s) 153, 1635, 2372
HaeIII GGCC 4 cut(s) 2346, 2901, 3660, 3723
HapII CCGG 3 cut(s) 1489, 1746, 3774
HhaI GCGC 1 cut(s) 1518
Hin1I GRCGYC 1 cut(s) 1542
Hin6I GCGC 1 cut(s) 1516
HinP1I GCGC 1 cut(s) 1516
HincII GTYRAC 5 cut(s) 240, 1900, 1975, 3067, 3428
HindII GTYRAC 5 cut(s) 240, 1900, 1975, 3067, 3428
HindIII AAGCTT 5 cut(s) 2105, 2318, 2531, 2579, 2945
HpaI GTTAAC 1 cut(s) 3067
HpaII CCGG 3 cut(s) 1489, 1746, 3774
HphI GGTGA 5 cut(s) 12, 1079, 1396, 3094, 3566
Hpy188I TCNGA 8 cut(s) 331, 487, 497, 823, 2806, 2952, 3077, 3439
HpyCH4III ACNGT 7 cut(s) 298, 1208, 1426, 2676, 3071, 3253, 3467
HpyCH4IV ACGT 8 cut(s) 624, 862, 1542, 1629, 2059, 2680, 2954, 2988
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 1456, 1513, 1518, 1818, 2412
HpyF3I CTNAG 7 cut(s) 24, 1193, 1877, 2786, 2836, 3345, 3368
HpySE526I ACGT 8 cut(s) 624, 862, 1542, 1629, 2059, 2680, 2954, 2988
Hsp92I GRCGYC 1 cut(s) 1542
HspAI GCGC 1 cut(s) 1516
KpnI GGTACC 1 cut(s) 3774
KspAI GTTAAC 1 cut(s) 3067
LmnI GCTCC 7 cut(s) 836, 1464, 2152, 3199, 3391, 3616, 3839
Lsp1109I GCAGC 8 cut(s) 169, 288, 598, 1530, 2927, 3246, 3701, 3764
MaeII ACGT 8 cut(s) 624, 862, 1542, 1629, 2059, 2680, 2954, 2988
MbiI CCGCTC 1 cut(s) 683
MflI RGATCY 5 cut(s) 1189, 1412, 2245, 2506, 2782
MhlI GDGCHC 3 cut(s) 492, 2616, 3465
MlsI TGGCCA 1 cut(s) 2901
MluNI TGGCCA 1 cut(s) 2901
MlyI GAGTC 1 cut(s) 3312
MmeI TCCRAC 3 cut(s) 544, 2179, 2285
Mox20I TGGCCA 1 cut(s) 2901
Mph1103I ATGCAT 2 cut(s) 235, 281
MroXI GAANNNNTTC 4 cut(s) 1073, 1301, 1713, 2214
MscI TGGCCA 1 cut(s) 2901
MslI CAYNNNNRTG 5 cut(s) 25, 2163, 3468, 3672, 3735
Msp20I TGGCCA 1 cut(s) 2901
MspCI CTTAAG 1 cut(s) 2108
MspI CCGG 3 cut(s) 1489, 1746, 3774
MspR9I CCNGG 6 cut(s) 1490, 1509, 1614, 1980, 3198, 3267
Mva1269I GAATGC 6 cut(s) 281, 1073, 1452, 1639, 2208, 2736
MvaI CCWGG 5 cut(s) 1509, 1614, 1980, 3198, 3267
MwoI GCNNNNNNNGC 6 cut(s) 179, 1456, 1513, 1518, 1818, 2412
NciI CCSGG 1 cut(s) 1490
NdeI CATATG 1 cut(s) 1432
NlaIV GGNNCC 6 cut(s) 838, 1533, 1691, 3393, 3587, 3772
NmuCI GTSAC 6 cut(s) 863, 1085, 2676, 2789, 3278, 3851
NsiI ATGCAT 2 cut(s) 235, 281
NspI RCATGY 5 cut(s) 1320, 1553, 1810, 2419, 3063
OliI CACNNNNGTG 1 cut(s) 25
PaeI GCATGC 1 cut(s) 2419
PagI TCATGA 3 cut(s) 376, 703, 829
PaqCI CACCTGC 1 cut(s) 2474
PasI CCCWGGG 1 cut(s) 1979
PceI AGGCCT 2 cut(s) 3660, 3723
PciI ACATGT 3 cut(s) 1549, 1806, 3059
PctI GAATGC 6 cut(s) 281, 1073, 1452, 1639, 2208, 2736
PdmI GAANNNNTTC 4 cut(s) 1073, 1301, 1713, 2214
PflMI CCANNNNNTGG 4 cut(s) 471, 1468, 3235, 3541
PfoI TCCNGGA 1 cut(s) 3196
PinAI ACCGGT 1 cut(s) 3773
PkrI GCNGC 8 cut(s) 184, 303, 588, 1520, 2942, 3261, 3691, 3754
PleI GAGTC 1 cut(s) 3312
PpsI GAGTC 1 cut(s) 3312
Ppu21I YACGTR 2 cut(s) 2060, 2681
PpuMI RGGWCCY 1 cut(s) 3845
PscI ACATGT 3 cut(s) 1549, 1806, 3059
PshAI GACNNNNGTC 1 cut(s) 2130
PshBI ATTAAT 2 cut(s) 2298, 3357
PsiI TTATAA 1 cut(s) 1127
Psp124BI GAGCTC 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 3845
Psp6I CCWGG 5 cut(s) 1507, 1612, 1978, 3196, 3265
PspEI GGTNACC 1 cut(s) 1085
PspGI CCWGG 5 cut(s) 1507, 1612, 1978, 3196, 3265
PspN4I GGNNCC 6 cut(s) 838, 1533, 1691, 3393, 3587, 3772
PspPI GGNCC 5 cut(s) 1743, 2344, 3351, 3586, 3845
PspPPI RGGWCCY 1 cut(s) 3845
PstI CTGCAG 2 cut(s) 187, 588
PsuI RGATCY 5 cut(s) 1189, 1412, 2245, 2506, 2782
RseI CAYNNNNRTG 5 cut(s) 25, 2163, 3468, 3672, 3735
SacI GAGCTC 1 cut(s) 492
SatI GCNGC 8 cut(s) 183, 302, 587, 1519, 2941, 3260, 3690, 3753
Sau96I GGNCC 5 cut(s) 1743, 2344, 3351, 3586, 3845
ScaI AGTACT 2 cut(s) 1164, 3766
SchI GAGTC 1 cut(s) 3312
ScrFI CCNGG 6 cut(s) 1490, 1509, 1614, 1980, 3198, 3267
SduI GDGCHC 3 cut(s) 492, 2616, 3465
SfcI CTRYAG 3 cut(s) 183, 584, 2908
SinI GGWCC 4 cut(s) 1743, 3351, 3586, 3845
SmiI ATTTAAAT 1 cut(s) 3526
SmiMI CAYNNNNRTG 5 cut(s) 25, 2163, 3468, 3672, 3735
SmlI CTYRAG 7 cut(s) 1106, 1603, 1931, 2108, 2443, 2501, 3827
SmoI CTYRAG 7 cut(s) 1106, 1603, 1931, 2108, 2443, 2501, 3827
SpeI ACTAGT 1 cut(s) 2264
SphI GCATGC 1 cut(s) 2419
SseBI AGGCCT 2 cut(s) 3660, 3723
SsiI CCGC 7 cut(s) 654, 683, 1329, 1486, 3044, 3335, 3582
SspI AATATT 1 cut(s) 1302
SstI GAGCTC 1 cut(s) 492
StuI AGGCCT 2 cut(s) 3660, 3723
StyD4I CCNGG 6 cut(s) 1488, 1507, 1612, 1978, 3196, 3265
StyI CCWWGG 1 cut(s) 465
SwaI ATTTAAAT 1 cut(s) 3526
TaaI ACNGT 7 cut(s) 298, 1208, 1426, 2676, 3071, 3253, 3467
TaiI ACGT 8 cut(s) 627, 865, 1545, 1632, 2062, 2683, 2957, 2991
TaqI TCGA 3 cut(s) 70, 1649, 3245
TatI WGTACW 5 cut(s) 1162, 1955, 3104, 3701, 3764
TscAI CASTG 7 cut(s) 32, 103, 1213, 2059, 2485, 2827, 3372
TseFI GTSAC 6 cut(s) 863, 1085, 2676, 2789, 3278, 3851
TseI GCWGC 8 cut(s) 182, 301, 586, 1518, 2940, 3259, 3689, 3752
Tsp45I GTSAC 6 cut(s) 863, 1085, 2676, 2789, 3278, 3851
TspGWI ACGGA 4 cut(s) 532, 3148, 3578, 3852
TspRI CASTG 7 cut(s) 32, 103, 1213, 2059, 2485, 2827, 3372
Van91I CCANNNNNTGG 4 cut(s) 471, 1468, 3235, 3541
Vha464I CTTAAG 1 cut(s) 2108
VneI GTGCAC 1 cut(s) 3461
VpaK11BI GGWCC 4 cut(s) 1743, 3351, 3586, 3845
VspI ATTAAT 2 cut(s) 2298, 3357
XapI RAATTY 9 cut(s) 267, 567, 707, 917, 1031, 1245, 2857, 3207, 3548
XbaI TCTAGA 1 cut(s) 1279
XceI RCATGY 5 cut(s) 1320, 1553, 1810, 2419, 3063
XcmI CCANNNNNNNNNTGG 3 cut(s) 941, 2976, 3538
XmiI GTMKAC 1 cut(s) 763
XmnI GAANNNNTTC 4 cut(s) 1073, 1301, 1713, 2214
ZraI GACGTC 1 cut(s) 1543
ZrmI AGTACT 2 cut(s) 1164, 3766
Zsp2I ATGCAT 2 cut(s) 235, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.