TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 188 | 9.6e-53 | TIR domain |
| TIR_2 | PF13676 | 21 - 116 | 3.7e-15 | TIR domain |
| NB-ARC | PF00931 | 212 - 366 | 3.2e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 435 - 503 | 1.7e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 669 - 748 | 2.1e-11 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 669 - 887 | 6.1e-11 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 777 - 851 | 7.1e-07 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 784 - 822 | 5.4e-06 | Leucine rich repeat |
| C-JID | PF20160 | 952 - 1055 | 1.9e-09 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 863, 1142 |
| AarI | CACCTGC | 1 cut(s) | 1518 |
| AatII | GACGTC | 1 cut(s) | 1560 |
| Acc36I | ACCTGC | 2 cut(s) | 1518, 1710 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1994, 2893 |
| AccI | GTMKAC | 1 cut(s) | 778 |
| AccIII | TCCGGA | 2 cut(s) | 2601, 2869 |
| AciI | CCGC | 7 cut(s) | 643, 669, 1386, 1501, 2529, 2592, 3139 |
| AclWI | GGATC | 9 cut(s) | 152, 338, 1212, 1292, 1299, 1422, 2385, 3130, 3143 |
| AcoI | YGGCCR | 2 cut(s) | 2488, 2670 |
| AcsI | RAATTY | 8 cut(s) | 288, 481, 585, 722, 1260, 2837, 2865, 3273 |
| AcuI | CTGAAG | 5 cut(s) | 174, 477, 1323, 1611, 2561 |
| AcyI | GRCGYC | 1 cut(s) | 1557 |
| AfaI | GTAC | 6 cut(s) | 357, 1179, 1225, 2019, 2812, 2879 |
| AfeI | AGCGCT | 1 cut(s) | 2641 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1708, 1994, 2893, 3032 |
| AflII | CTTAAG | 1 cut(s) | 2786 |
| AflIII | ACRYGT | 1 cut(s) | 1564 |
| AhlI | ACTAGT | 1 cut(s) | 280 |
| AjiI | CACGTC | 1 cut(s) | 1639 |
| AjnI | CCWGG | 3 cut(s) | 1503, 1987, 2923 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 564, 596 |
| AleI | CACNNNNGTG | 1 cut(s) | 2889 |
| Alw26I | GTCTC | 3 cut(s) | 939, 1824, 2155 |
| AlwI | GGATC | 9 cut(s) | 152, 338, 1212, 1292, 1299, 1422, 2385, 3130, 3143 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2388 |
| Ama87I | CYCGRG | 2 cut(s) | 1940, 2477 |
| Aor13HI | TCCGGA | 2 cut(s) | 2601, 2869 |
| Aor51HI | AGCGCT | 1 cut(s) | 2641 |
| AoxI | GGCC | 5 cut(s) | 825, 1984, 2488, 2670, 2931 |
| ApeKI | GCWGC | 5 cut(s) | 203, 322, 601, 2255, 2917 |
| ApoI | RAATTY | 8 cut(s) | 288, 481, 585, 722, 1260, 2837, 2865, 3273 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2299, 2331 |
| AseI | ATTAAT | 2 cut(s) | 1881, 3207 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1088, 1316, 2574, 3374 |
| AspLEI | GCGC | 2 cut(s) | 2642, 3025 |
| AspS9I | GGNCC | 3 cut(s) | 1985, 2931, 3363 |
| AsuC2I | CCSGG | 3 cut(s) | 1524, 2856, 2952 |
| AsuHPI | GGTGA | 2 cut(s) | 890, 2876 |
| AvaI | CYCGRG | 2 cut(s) | 1940, 2477 |
| AvaII | GGWCC | 1 cut(s) | 3363 |
| AxyI | CCTNAGG | 2 cut(s) | 1621, 1707 |
| BalI | TGGCCA | 1 cut(s) | 2672 |
| BamHI | GGATCC | 1 cut(s) | 3135 |
| BauI | CACGAG | 1 cut(s) | 717 |
| BbsI | GAAGAC | 6 cut(s) | 1151, 1459, 1560, 2045, 2421, 2892 |
| BbvI | GCAGC | 5 cut(s) | 215, 309, 613, 2267, 2904 |
| BccI | CCATC | 5 cut(s) | 924, 1442, 1786, 2629, 3026 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2316, 2350 |
| BciT130I | CCWGG | 3 cut(s) | 1505, 1989, 2925 |
| BciVI | GTATCC | 2 cut(s) | 1770, 3029 |
| BcnI | CCSGG | 3 cut(s) | 1524, 2856, 2952 |
| BcoDI | GTCTC | 3 cut(s) | 939, 1824, 2155 |
| BcuI | ACTAGT | 1 cut(s) | 280 |
| BfaI | CTAG | 7 cut(s) | 281, 990, 1295, 1322, 2499, 2562, 3252 |
| BfmI | CTRYAG | 1 cut(s) | 2910 |
| BfoI | RGCGCY | 1 cut(s) | 2643 |
| BfrI | CTTAAG | 1 cut(s) | 2786 |
| BfuAI | ACCTGC | 2 cut(s) | 1518, 1710 |
| BfuI | GTATCC | 2 cut(s) | 1770, 3029 |
| BglII | AGATCT | 2 cut(s) | 2089, 2446 |
| BisI | GCNGC | 7 cut(s) | 204, 323, 602, 2256, 2530, 2593, 2918 |
| BlsI | GCNGC | 7 cut(s) | 205, 324, 603, 2257, 2531, 2594, 2919 |
| BmcAI | AGTACT | 1 cut(s) | 1179 |
| Bme1390I | CCNGG | 6 cut(s) | 1505, 1524, 1989, 2856, 2925, 2952 |
| Bme18I | GGWCC | 1 cut(s) | 3363 |
| BmeT110I | CYCGRG | 2 cut(s) | 1940, 2477 |
| BmgBI | CACGTC | 1 cut(s) | 1639 |
| BmgT120I | GGNCC | 3 cut(s) | 1985, 2931, 3363 |
| BmiI | GGNNCC | 4 cut(s) | 853, 1644, 1700, 3137 |
| BmrFI | CCNGG | 6 cut(s) | 1505, 1524, 1989, 2856, 2925, 2952 |
| BmrI | ACTGGG | 4 cut(s) | 1190, 1238, 1247, 2403 |
| BmuI | ACTGGG | 4 cut(s) | 1190, 1238, 1247, 2403 |
| BpiI | GAAGAC | 6 cut(s) | 1151, 1459, 1560, 2045, 2421, 2892 |
| BpuEI | CTTGAG | 2 cut(s) | 577, 1088 |
| BpuMI | CCSGG | 3 cut(s) | 1524, 2856, 2952 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1296, 2094, 2445 |
| BsaHI | GRCGYC | 1 cut(s) | 1557 |
| BsaI | GGTCTC | 1 cut(s) | 939 |
| BsaJI | CCNNGG | 2 cut(s) | 1987, 3359 |
| BsaWI | WCCGGW | 2 cut(s) | 2601, 2869 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1617, 1647 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1708, 1994, 2893, 3032 |
| Bse1I | ACTGG | 9 cut(s) | 605, 1185, 1233, 1242, 1588, 2379, 2409, 2710, 3265 |
| Bse21I | CCTNAGG | 2 cut(s) | 1621, 1707 |
| Bse3DI | GCAATG | 4 cut(s) | 88, 1326, 2068, 2768 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1296, 2094, 2445 |
| BseAI | TCCGGA | 2 cut(s) | 2601, 2869 |
| BseBI | CCWGG | 3 cut(s) | 1505, 1989, 2925 |
| BseDI | CCNNGG | 2 cut(s) | 1987, 3359 |
| BseJI | GATNNNNATC | 3 cut(s) | 1296, 2094, 2445 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1708, 1994, 2893, 3032 |
| BseMI | GCAATG | 4 cut(s) | 88, 1326, 2068, 2768 |
| BseMII | CTCAG | 7 cut(s) | 59, 59, 1489, 1808, 1877, 2395, 2464 |
| BseNI | ACTGG | 9 cut(s) | 605, 1185, 1233, 1242, 1588, 2379, 2409, 2710, 3265 |
| BseRI | GAGGAG | 4 cut(s) | 33, 2191, 3122, 3179 |
| BseXI | GCAGC | 5 cut(s) | 215, 309, 613, 2267, 2904 |
| BsgI | GTGCAG | 2 cut(s) | 452, 1552 |
| BshFI | GGCC | 5 cut(s) | 827, 1986, 2490, 2672, 2933 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1940, 2477 |
| BsiSI | CCGG | 7 cut(s) | 1081, 1523, 2324, 2602, 2856, 2870, 2952 |
| BslFI | GGGAC | 3 cut(s) | 1232, 1725, 2697 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1708, 1994, 2893, 3032 |
| BsmAI | GTCTC | 3 cut(s) | 939, 1824, 2155 |
| BsmFI | GGGAC | 3 cut(s) | 1232, 1725, 2697 |
| BsmI | GAATGC | 3 cut(s) | 302, 1088, 2359 |
| BsnI | GGCC | 5 cut(s) | 827, 1986, 2490, 2672, 2933 |
| Bso31I | GGTCTC | 1 cut(s) | 939 |
| BsoBI | CYCGRG | 2 cut(s) | 1940, 2477 |
| Bsp13I | TCCGGA | 2 cut(s) | 2601, 2869 |
| BspACI | CCGC | 7 cut(s) | 643, 669, 1386, 1501, 2529, 2592, 3139 |
| BspANI | GGCC | 5 cut(s) | 827, 1986, 2490, 2672, 2933 |
| BspCNI | CTCAG | 7 cut(s) | 58, 60, 1488, 1807, 1878, 2394, 2463 |
| BspEI | TCCGGA | 2 cut(s) | 2601, 2869 |
| BspHI | TCATGA | 3 cut(s) | 397, 844, 1489 |
| BspLI | GGNNCC | 4 cut(s) | 853, 1644, 1700, 3137 |
| BspMI | ACCTGC | 2 cut(s) | 1518, 1710 |
| BspPI | GGATC | 9 cut(s) | 152, 338, 1212, 1292, 1299, 1422, 2385, 3130, 3143 |
| BspQI | GCTCTTC | 1 cut(s) | 2769 |
| BspTI | CTTAAG | 1 cut(s) | 2786 |
| BspTNI | GGTCTC | 1 cut(s) | 939 |
| BsrDI | GCAATG | 4 cut(s) | 88, 1326, 2068, 2768 |
| BsrI | ACTGG | 9 cut(s) | 605, 1185, 1233, 1242, 1588, 2379, 2409, 2710, 3265 |
| BssECI | CCNNGG | 2 cut(s) | 1987, 3359 |
| BssNI | GRCGYC | 1 cut(s) | 1557 |
| BssSI | CACGAG | 1 cut(s) | 717 |
| Bst2BI | CACGAG | 1 cut(s) | 717 |
| Bst2UI | CCWGG | 3 cut(s) | 1505, 1989, 2925 |
| Bst4CI | ACNGT | 7 cut(s) | 319, 1223, 2017, 2723, 2810, 2911, 3363 |
| Bst6I | CTCTTC | 3 cut(s) | 1237, 1299, 2769 |
| BstACI | GRCGYC | 1 cut(s) | 1557 |
| BstAFI | CTTAAG | 1 cut(s) | 2786 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 200, 1471 |
| BstC8I | GCNNGC | 2 cut(s) | 272, 3262 |
| BstDSI | CCRYGG | 1 cut(s) | 3359 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1706 |
| BstH2I | RGCGCY | 1 cut(s) | 2643 |
| BstHHI | GCGC | 2 cut(s) | 2642, 3025 |
| BstMAI | GTCTC | 3 cut(s) | 939, 1824, 2155 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 78, 200, 1471, 2952, 3201 |
| BstNI | CCWGG | 3 cut(s) | 1505, 1989, 2925 |
| BstNSI | RCATGY | 2 cut(s) | 1335, 1568 |
| BstSCI | CCNGG | 6 cut(s) | 1503, 1522, 1987, 2854, 2923, 2950 |
| BstSFI | CTRYAG | 1 cut(s) | 2910 |
| BstV1I | GCAGC | 5 cut(s) | 215, 309, 613, 2267, 2904 |
| BstV2I | GAAGAC | 6 cut(s) | 1151, 1459, 1560, 2045, 2421, 2892 |
| BstX2I | RGATCY | 8 cut(s) | 1204, 1291, 1297, 1427, 2089, 2377, 2446, 3135 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1583, 2680, 3277 |
| BstYI | RGATCY | 8 cut(s) | 1204, 1291, 1297, 1427, 2089, 2377, 2446, 3135 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1621, 1707 |
| BsuI | GTATCC | 2 cut(s) | 1770, 3029 |
| BsuRI | GGCC | 5 cut(s) | 827, 1986, 2490, 2672, 2933 |
| BtgI | CCRYGG | 1 cut(s) | 3359 |
| BtgZI | GCGATG | 1 cut(s) | 3232 |
| BtrI | CACGTC | 1 cut(s) | 1639 |
| BtsI | GCAGTG | 2 cut(s) | 117, 705 |
| BtsIMutI | CAGTG | 6 cut(s) | 53, 117, 705, 1226, 2389, 2416 |
| BveI | ACCTGC | 2 cut(s) | 1518, 1710 |
| Cac8I | GCNNGC | 2 cut(s) | 272, 3262 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2388 |
| CciI | TCATGA | 3 cut(s) | 397, 844, 1489 |
| CfoI | GCGC | 2 cut(s) | 2642, 3025 |
| Cfr13I | GGNCC | 3 cut(s) | 1985, 2931, 3363 |
| CseI | GACGC | 1 cut(s) | 2247 |
| Csp6I | GTAC | 6 cut(s) | 356, 1178, 1224, 2018, 2811, 2878 |
| CviQI | GTAC | 6 cut(s) | 356, 1178, 1224, 2018, 2811, 2878 |
| DraI | TTTAAA | 2 cut(s) | 379, 1924 |
| EaeI | YGGCCR | 2 cut(s) | 2488, 2670 |
| Eam1104I | CTCTTC | 3 cut(s) | 1237, 1299, 2769 |
| EarI | CTCTTC | 3 cut(s) | 1237, 1299, 2769 |
| EciI | GGCGGA | 1 cut(s) | 1490 |
| Eco31I | GGTCTC | 1 cut(s) | 939 |
| Eco32I | GATATC | 1 cut(s) | 3064 |
| Eco47I | GGWCC | 1 cut(s) | 3363 |
| Eco47III | AGCGCT | 1 cut(s) | 2641 |
| Eco57I | CTGAAG | 5 cut(s) | 174, 477, 1323, 1611, 2561 |
| Eco81I | CCTNAGG | 2 cut(s) | 1621, 1707 |
| Eco88I | CYCGRG | 2 cut(s) | 1940, 2477 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1706 |
| EcoRI | GAATTC | 2 cut(s) | 288, 481 |
| EcoRII | CCWGG | 3 cut(s) | 1503, 1987, 2923 |
| EcoRV | GATATC | 1 cut(s) | 3064 |
| EcoT22I | ATGCAT | 2 cut(s) | 256, 1467 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1104, 1136 |
| FaqI | GGGAC | 3 cut(s) | 1232, 1725, 2697 |
| FauI | CCCGC | 1 cut(s) | 662 |
| FblI | GTMKAC | 1 cut(s) | 778 |
| Fnu4HI | GCNGC | 7 cut(s) | 204, 323, 602, 2256, 2530, 2593, 2918 |
| Fsp4HI | GCNGC | 7 cut(s) | 204, 323, 602, 2256, 2530, 2593, 2918 |
| FspBI | CTAG | 7 cut(s) | 281, 990, 1295, 1322, 2499, 2562, 3252 |
| GlaI | GCGC | 2 cut(s) | 2641, 3024 |
| GluI | GCNGC | 7 cut(s) | 204, 323, 602, 2256, 2530, 2593, 2918 |
| HaeII | RGCGCY | 1 cut(s) | 2643 |
| HaeIII | GGCC | 5 cut(s) | 827, 1986, 2490, 2672, 2933 |
| HapII | CCGG | 7 cut(s) | 1081, 1523, 2324, 2602, 2856, 2870, 2952 |
| HgaI | GACGC | 1 cut(s) | 2247 |
| HhaI | GCGC | 2 cut(s) | 2642, 3025 |
| Hin1I | GRCGYC | 1 cut(s) | 1557 |
| Hin6I | GCGC | 2 cut(s) | 2640, 3023 |
| HinP1I | GCGC | 2 cut(s) | 2640, 3023 |
| HincII | GTYRAC | 5 cut(s) | 261, 1909, 2262, 2719, 2990 |
| HindII | GTYRAC | 5 cut(s) | 261, 1909, 2262, 2719, 2990 |
| HindIII | AAGCTT | 3 cut(s) | 1813, 2114, 2162 |
| HpaI | GTTAAC | 1 cut(s) | 2719 |
| HpaII | CCGG | 7 cut(s) | 1081, 1523, 2324, 2602, 2856, 2870, 2952 |
| HphI | GGTGA | 2 cut(s) | 890, 2876 |
| HpyAV | CCTTC | 9 cut(s) | 749, 817, 842, 851, 1030, 1194, 1595, 1952, 3233 |
| HpyCH4III | ACNGT | 7 cut(s) | 319, 1223, 2017, 2723, 2810, 2911, 3363 |
| HpyCH4IV | ACGT | 2 cut(s) | 1557, 1638 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 78, 200, 1471, 2952, 3201 |
| HpySE526I | ACGT | 2 cut(s) | 1557, 1638 |
| Hsp92I | GRCGYC | 1 cut(s) | 1557 |
| HspAI | GCGC | 2 cut(s) | 2640, 3023 |
| Kpn2I | TCCGGA | 2 cut(s) | 2601, 2869 |
| KspAI | GTTAAC | 1 cut(s) | 2719 |
| LguI | GCTCTTC | 1 cut(s) | 2769 |
| LmnI | GCTCC | 5 cut(s) | 851, 1648, 1898, 2857, 3166 |
| Lsp1109I | GCAGC | 5 cut(s) | 215, 309, 613, 2267, 2904 |
| MaeI | CTAG | 7 cut(s) | 281, 990, 1295, 1322, 2499, 2562, 3252 |
| MaeII | ACGT | 2 cut(s) | 1557, 1638 |
| MaeIII | GTNAC | 5 cut(s) | 878, 1283, 1363, 2315, 2384 |
| MfeI | CAATTG | 1 cut(s) | 207 |
| MflI | RGATCY | 8 cut(s) | 1204, 1291, 1297, 1427, 2089, 2377, 2446, 3135 |
| MlsI | TGGCCA | 1 cut(s) | 2672 |
| MluNI | TGGCCA | 1 cut(s) | 2672 |
| MlyI | GAGTC | 3 cut(s) | 1610, 1897, 2559 |
| MmeI | TCCRAC | 2 cut(s) | 562, 1236 |
| Mox20I | TGGCCA | 1 cut(s) | 2672 |
| Mph1103I | ATGCAT | 2 cut(s) | 256, 1467 |
| MroI | TCCGGA | 2 cut(s) | 2601, 2869 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1088, 1316, 2574, 3374 |
| MscI | TGGCCA | 1 cut(s) | 2672 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1610, 2889, 3301 |
| Msp20I | TGGCCA | 1 cut(s) | 2672 |
| MspA1I | CMGCKG | 1 cut(s) | 2581 |
| MspCI | CTTAAG | 1 cut(s) | 2786 |
| MspI | CCGG | 7 cut(s) | 1081, 1523, 2324, 2602, 2856, 2870, 2952 |
| MspR9I | CCNGG | 6 cut(s) | 1505, 1524, 1989, 2856, 2925, 2952 |
| MunI | CAATTG | 1 cut(s) | 207 |
| Mva1269I | GAATGC | 3 cut(s) | 302, 1088, 2359 |
| MvaI | CCWGG | 3 cut(s) | 1505, 1989, 2925 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 78, 200, 1471, 2952, 3201 |
| NciI | CCSGG | 3 cut(s) | 1524, 2856, 2952 |
| NlaIV | GGNNCC | 4 cut(s) | 853, 1644, 1700, 3137 |
| NmuCI | GTSAC | 3 cut(s) | 878, 2315, 2384 |
| NsiI | ATGCAT | 2 cut(s) | 256, 1467 |
| NspI | RCATGY | 2 cut(s) | 1335, 1568 |
| OliI | CACNNNNGTG | 1 cut(s) | 2889 |
| PaeR7I | CTCGAG | 1 cut(s) | 1940 |
| PagI | TCATGA | 3 cut(s) | 397, 844, 1489 |
| PaqCI | CACCTGC | 1 cut(s) | 1518 |
| PciI | ACATGT | 1 cut(s) | 1564 |
| PciSI | GCTCTTC | 1 cut(s) | 2769 |
| PctI | GAATGC | 3 cut(s) | 302, 1088, 2359 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1088, 1316, 2574, 3374 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1994, 2893 |
| PfoI | TCCNGGA | 1 cut(s) | 2854 |
| PkrI | GCNGC | 7 cut(s) | 205, 324, 603, 2257, 2531, 2594, 2919 |
| PleI | GAGTC | 3 cut(s) | 1610, 1896, 2559 |
| PpsI | GAGTC | 3 cut(s) | 1610, 1896, 2559 |
| PscI | ACATGT | 1 cut(s) | 1564 |
| PshBI | ATTAAT | 2 cut(s) | 1881, 3207 |
| PsiI | TTATAA | 2 cut(s) | 863, 1142 |
| Psp6I | CCWGG | 3 cut(s) | 1503, 1987, 2923 |
| PspGI | CCWGG | 3 cut(s) | 1503, 1987, 2923 |
| PspN4I | GGNNCC | 4 cut(s) | 853, 1644, 1700, 3137 |
| PspPI | GGNCC | 3 cut(s) | 1985, 2931, 3363 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2388 |
| PsuI | RGATCY | 8 cut(s) | 1204, 1291, 1297, 1427, 2089, 2377, 2446, 3135 |
| PvuII | CAGCTG | 1 cut(s) | 2581 |
| RsaI | GTAC | 6 cut(s) | 357, 1179, 1225, 2019, 2812, 2879 |
| RsaNI | GTAC | 6 cut(s) | 356, 1178, 1224, 2018, 2811, 2878 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1610, 2889, 3301 |
| SapI | GCTCTTC | 1 cut(s) | 2769 |
| SatI | GCNGC | 7 cut(s) | 204, 323, 602, 2256, 2530, 2593, 2918 |
| Sau96I | GGNCC | 3 cut(s) | 1985, 2931, 3363 |
| ScaI | AGTACT | 1 cut(s) | 1179 |
| SchI | GAGTC | 3 cut(s) | 1610, 1897, 2559 |
| ScrFI | CCNGG | 6 cut(s) | 1505, 1524, 1989, 2856, 2925, 2952 |
| SfcI | CTRYAG | 1 cut(s) | 2910 |
| Sfr274I | CTCGAG | 1 cut(s) | 1940 |
| SinI | GGWCC | 1 cut(s) | 3363 |
| SlaI | CTCGAG | 1 cut(s) | 1940 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1610, 2889, 3301 |
| SmlI | CTYRAG | 4 cut(s) | 592, 1067, 1940, 2786 |
| SmoI | CTYRAG | 4 cut(s) | 592, 1067, 1940, 2786 |
| SpeI | ACTAGT | 1 cut(s) | 280 |
| SsiI | CCGC | 7 cut(s) | 643, 669, 1386, 1501, 2529, 2592, 3139 |
| SspI | AATATT | 3 cut(s) | 935, 1317, 3199 |
| SspMI | CTAG | 7 cut(s) | 281, 990, 1295, 1322, 2499, 2562, 3252 |
| StyD4I | CCNGG | 6 cut(s) | 1503, 1522, 1987, 2854, 2923, 2950 |
| TaaI | ACNGT | 7 cut(s) | 319, 1223, 2017, 2723, 2810, 2911, 3363 |
| TaiI | ACGT | 2 cut(s) | 1560, 1641 |
| TaqI | TCGA | 6 cut(s) | 218, 1941, 2094, 2226, 2568, 2903 |
| TatI | WGTACW | 4 cut(s) | 1177, 1223, 2017, 2810 |
| TauI | GCSGC | 2 cut(s) | 2532, 2595 |
| TscAI | CASTG | 6 cut(s) | 53, 124, 705, 1233, 2389, 2416 |
| TseFI | GTSAC | 3 cut(s) | 878, 2315, 2384 |
| TseI | GCWGC | 5 cut(s) | 203, 322, 601, 2255, 2917 |
| Tsp45I | GTSAC | 3 cut(s) | 878, 2315, 2384 |
| TspGWI | ACGGA | 2 cut(s) | 1474, 1753 |
| TspRI | CASTG | 6 cut(s) | 53, 124, 705, 1233, 2389, 2416 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1994, 2893 |
| Vha464I | CTTAAG | 1 cut(s) | 2786 |
| VpaK11BI | GGWCC | 1 cut(s) | 3363 |
| VspI | ATTAAT | 2 cut(s) | 1881, 3207 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1706 |
| XapI | RAATTY | 8 cut(s) | 288, 481, 585, 722, 1260, 2837, 2865, 3273 |
| XbaI | TCTAGA | 2 cut(s) | 1294, 2498 |
| XceI | RCATGY | 2 cut(s) | 1335, 1568 |
| XhoI | CTCGAG | 1 cut(s) | 1940 |
| XmiI | GTMKAC | 1 cut(s) | 778 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1088, 1316, 2574, 3374 |
| XspI | CTAG | 7 cut(s) | 281, 990, 1295, 1322, 2499, 2562, 3252 |
| ZraI | GACGTC | 1 cut(s) | 1558 |
| ZrmI | AGTACT | 1 cut(s) | 1179 |
| Zsp2I | ATGCAT | 2 cut(s) | 256, 1467 |