TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RPN6_N | PF18055 | 14 - 102 | 2.9e-21 | 26S proteasome regulatory subunit RPN6 N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 171, 201 |
| AcuI | CTGAAG | 3 cut(s) | 90, 141, 312 |
| AfaI | GTAC | 1 cut(s) | 297 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 219 |
| AgsI | TTSAA | 2 cut(s) | 101, 232 |
| AjnI | CCWGG | 1 cut(s) | 298 |
| AluBI | AGCT | 3 cut(s) | 125, 217, 290 |
| AluI | AGCT | 3 cut(s) | 125, 217, 290 |
| AlwI | GGATC | 2 cut(s) | 171, 201 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 290 |
| AoxI | GGCC | 2 cut(s) | 54, 221 |
| AsuHPI | GGTGA | 1 cut(s) | 202 |
| AxyI | CCTNAGG | 1 cut(s) | 170 |
| BbvCI | CCTCAGC | 1 cut(s) | 218 |
| BccI | CCATC | 2 cut(s) | 73, 83 |
| BciT130I | CCWGG | 1 cut(s) | 300 |
| Bme1390I | CCNGG | 1 cut(s) | 300 |
| BmrFI | CCNGG | 1 cut(s) | 300 |
| BmsI | GCATC | 1 cut(s) | 271 |
| Bpu10I | CCTNAGC | 2 cut(s) | 42, 218 |
| Bsa29I | ATCGAT | 2 cut(s) | 35, 308 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 219 |
| Bse21I | CCTNAGG | 1 cut(s) | 170 |
| BseBI | CCWGG | 1 cut(s) | 300 |
| BseCI | ATCGAT | 2 cut(s) | 35, 308 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 219 |
| BseMII | CTCAG | 2 cut(s) | 56, 209 |
| BseYI | CCCAGC | 1 cut(s) | 213 |
| BshFI | GGCC | 2 cut(s) | 56, 223 |
| BshVI | ATCGAT | 2 cut(s) | 35, 308 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 219 |
| BsnI | GGCC | 2 cut(s) | 56, 223 |
| Bsp143I | GATC | 3 cut(s) | 163, 193, 309 |
| BspANI | GGCC | 2 cut(s) | 56, 223 |
| BspCNI | CTCAG | 2 cut(s) | 55, 210 |
| BspDI | ATCGAT | 2 cut(s) | 35, 308 |
| BspPI | GGATC | 2 cut(s) | 171, 201 |
| BssMI | GATC | 3 cut(s) | 163, 193, 309 |
| Bst2UI | CCWGG | 1 cut(s) | 300 |
| Bst4CI | ACNGT | 1 cut(s) | 92 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 254 |
| BstC8I | GCNNGC | 1 cut(s) | 186 |
| BstDEI | CTNAG | 3 cut(s) | 42, 170, 218 |
| BstKTI | GATC | 3 cut(s) | 166, 196, 312 |
| BstMBI | GATC | 3 cut(s) | 163, 193, 309 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 53, 181, 254 |
| BstNI | CCWGG | 1 cut(s) | 300 |
| BstSCI | CCNGG | 1 cut(s) | 298 |
| BstX2I | RGATCY | 2 cut(s) | 163, 193 |
| BstYI | RGATCY | 2 cut(s) | 163, 193 |
| Bsu15I | ATCGAT | 2 cut(s) | 35, 308 |
| Bsu36I | CCTNAGG | 1 cut(s) | 170 |
| BsuRI | GGCC | 2 cut(s) | 56, 223 |
| BsuTUI | ATCGAT | 2 cut(s) | 35, 308 |
| Cac8I | GCNNGC | 1 cut(s) | 186 |
| CaiI | CAGNNNCTG | 1 cut(s) | 290 |
| ClaI | ATCGAT | 2 cut(s) | 35, 308 |
| Csp6I | GTAC | 1 cut(s) | 296 |
| CviJI | RGCY | 8 cut(s) | 47, 56, 74, 125, 146, 217, 223, 290 |
| CviKI_1 | RGCY | 8 cut(s) | 47, 56, 74, 125, 146, 217, 223, 290 |
| CviQI | GTAC | 1 cut(s) | 296 |
| DdeI | CTNAG | 3 cut(s) | 42, 170, 218 |
| DpnI | GATC | 3 cut(s) | 165, 195, 311 |
| DpnII | GATC | 3 cut(s) | 163, 193, 309 |
| DraI | TTTAAA | 1 cut(s) | 51 |
| Eco147I | AGGCCT | 1 cut(s) | 223 |
| Eco57I | CTGAAG | 3 cut(s) | 90, 141, 312 |
| Eco81I | CCTNAGG | 1 cut(s) | 170 |
| EcoRII | CCWGG | 1 cut(s) | 298 |
| FaiI | YATR | 2 cut(s) | 13, 149 |
| GsaI | CCCAGC | 1 cut(s) | 217 |
| HaeIII | GGCC | 2 cut(s) | 56, 223 |
| HinfI | GANTC | 2 cut(s) | 32, 238 |
| HphI | GGTGA | 1 cut(s) | 202 |
| Hpy188I | TCNGA | 4 cut(s) | 70, 121, 163, 314 |
| Hpy188III | TCNNGA | 1 cut(s) | 98 |
| HpyAV | CCTTC | 1 cut(s) | 215 |
| HpyCH4III | ACNGT | 1 cut(s) | 92 |
| HpyCH4V | TGCA | 3 cut(s) | 23, 257, 284 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 53, 181, 254 |
| HpyF3I | CTNAG | 3 cut(s) | 42, 170, 218 |
| Kzo9I | GATC | 3 cut(s) | 163, 193, 309 |
| LpnPI | CCDG | 5 cut(s) | 29, 33, 128, 227, 285 |
| LweI | GCATC | 1 cut(s) | 271 |
| MaeIII | GTNAC | 1 cut(s) | 200 |
| MalI | GATC | 3 cut(s) | 165, 195, 311 |
| MboI | GATC | 3 cut(s) | 163, 193, 309 |
| MboII | GAAGA | 3 cut(s) | 105, 108, 220 |
| MflI | RGATCY | 2 cut(s) | 163, 193 |
| MnlI | CCTC | 3 cut(s) | 26, 184, 213 |
| MseI | TTAA | 1 cut(s) | 50 |
| MspA1I | CMGCKG | 1 cut(s) | 217 |
| MspR9I | CCNGG | 1 cut(s) | 300 |
| MvaI | CCWGG | 1 cut(s) | 300 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 53, 181, 254 |
| NdeII | GATC | 3 cut(s) | 163, 193, 309 |
| PceI | AGGCCT | 1 cut(s) | 223 |
| PfeI | GAWTC | 2 cut(s) | 32, 238 |
| Psp6I | CCWGG | 1 cut(s) | 298 |
| PspFI | CCCAGC | 1 cut(s) | 213 |
| PspGI | CCWGG | 1 cut(s) | 298 |
| PstNI | CAGNNNCTG | 1 cut(s) | 290 |
| PsuI | RGATCY | 2 cut(s) | 163, 193 |
| PvuII | CAGCTG | 1 cut(s) | 217 |
| RsaI | GTAC | 1 cut(s) | 297 |
| RsaNI | GTAC | 1 cut(s) | 296 |
| SaqAI | TTAA | 1 cut(s) | 50 |
| Sau3AI | GATC | 3 cut(s) | 163, 193, 309 |
| ScrFI | CCNGG | 1 cut(s) | 300 |
| SetI | ASST | 5 cut(s) | 18, 127, 207, 219, 292 |
| SfaNI | GCATC | 1 cut(s) | 271 |
| SseBI | AGGCCT | 1 cut(s) | 223 |
| StuI | AGGCCT | 1 cut(s) | 223 |
| StyD4I | CCNGG | 1 cut(s) | 298 |
| TaaI | ACNGT | 1 cut(s) | 92 |
| TaqI | TCGA | 2 cut(s) | 35, 308 |
| TfiI | GAWTC | 2 cut(s) | 32, 238 |
| Tru1I | TTAA | 1 cut(s) | 50 |
| Tru9I | TTAA | 1 cut(s) | 50 |