TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| CAF1C_H4-bd | PF12265 | 55 - 122 | 9e-20 | Histone-binding protein RBBP4 or subunit C of CAF1 complex |
| Beta-prop_TEP1_2nd | PF25047 | 276 - 415 | 2.5e-10 | TEP-1 second beta-propeller |
| WD40_CDC20-Fz | PF24807 | 281 - 362 | 1.8e-07 | CDC20/Fizzy WD40 domain |
| Beta-prop_WDR5 | PF25175 | 282 - 414 | 2e-19 | WDR5 beta-propeller domain |
| Beta-prop_CAF1B_HIR1 | PF24105 | 282 - 363 | 5.4e-06 | CAF1B/HIR1 beta-propeller domain |
| Beta-prop_THOC3 | PF25174 | 283 - 322 | 8e-06 | THOC3 beta-propeller domain |
| WDR55 | PF24796 | 284 - 414 | 6.5e-07 | WDR55 |
| Beta-prop_EML | PF23409 | 286 - 416 | 6.4e-06 | Echinoderm microtubule-associated protein first beta-propeller |
| Beta-prop_EIPR1 | PF23609 | 286 - 360 | 3.8e-09 | EIPR1 beta-propeller |
| Beta-prop_Aladin | PF25460 | 289 - 413 | 2.7e-06 | Aladin seven-bladed propeller |
| Beta-prop_EML_2 | PF23414 | 299 - 424 | 2.2e-09 | Echinoderm microtubule-associated protein second beta-propeller |
| Beta-prop_WDR3_1st | PF25173 | 313 - 417 | 9.7e-10 | WDR3 first beta-propeller domain |
| WD40_Prp19 | PF24814 | 329 - 459 | 1.1e-10 | Prp19 WD40 domain |
| Beta-prop_THOC3 | PF25174 | 331 - 421 | 6.9e-12 | THOC3 beta-propeller domain |
| WD40_WDHD1_1st | PF24817 | 333 - 419 | 4e-07 | WDHD1 first WD40 domain |
| WD40_CDC20-Fz | PF24807 | 346 - 415 | 4.4e-07 | CDC20/Fizzy WD40 domain |
| WD40 | PF00400 | 372 - 410 | 2.7e-07 | WD domain, G-beta repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1125 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 770 |
| AccI | GTMKAC | 2 cut(s) | 159, 846 |
| AccII | CGCG | 1 cut(s) | 418 |
| AccIII | TCCGGA | 1 cut(s) | 598 |
| AciI | CCGC | 5 cut(s) | 260, 295, 381, 386, 1087 |
| AclWI | GGATC | 4 cut(s) | 726, 737, 775, 784 |
| AcsI | RAATTY | 2 cut(s) | 635, 1127 |
| AcuI | CTGAAG | 1 cut(s) | 1467 |
| AcvI | CACGTG | 1 cut(s) | 953 |
| AfaI | GTAC | 2 cut(s) | 170, 440 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 63, 541, 770, 797 |
| AflIII | ACRYGT | 2 cut(s) | 952, 1486 |
| AgsI | TTSAA | 4 cut(s) | 406, 551, 983, 1480 |
| AjnI | CCWGG | 5 cut(s) | 457, 763, 790, 849, 1282 |
| AluBI | AGCT | 6 cut(s) | 265, 484, 554, 897, 1145, 1468 |
| AluI | AGCT | 6 cut(s) | 265, 484, 554, 897, 1145, 1468 |
| Alw21I | GWGCWC | 2 cut(s) | 393, 675 |
| Alw26I | GTCTC | 4 cut(s) | 47, 86, 765, 1173 |
| AlwI | GGATC | 4 cut(s) | 726, 737, 775, 784 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 770 |
| Ama87I | CYCGRG | 2 cut(s) | 57, 266 |
| Aor13HI | TCCGGA | 1 cut(s) | 598 |
| AoxI | GGCC | 5 cut(s) | 61, 233, 256, 1210, 1442 |
| ApaI | GGGCCC | 1 cut(s) | 260 |
| ApoI | RAATTY | 2 cut(s) | 635, 1127 |
| AspLEI | GCGC | 5 cut(s) | 418, 420, 991, 1115, 1422 |
| AspS9I | GGNCC | 5 cut(s) | 61, 234, 256, 257, 821 |
| AsuC2I | CCSGG | 2 cut(s) | 58, 59 |
| AsuHPI | GGTGA | 2 cut(s) | 414, 932 |
| AsuII | TTCGAA | 1 cut(s) | 107 |
| AvaI | CYCGRG | 2 cut(s) | 57, 266 |
| AvaII | GGWCC | 1 cut(s) | 821 |
| BaeGI | GKGCMC | 2 cut(s) | 260, 1311 |
| BanII | GRGCYC | 1 cut(s) | 260 |
| BbrPI | CACGTG | 1 cut(s) | 953 |
| Bbv12I | GWGCWC | 2 cut(s) | 393, 675 |
| BccI | CCATC | 6 cut(s) | 314, 455, 791, 812, 1193, 1202 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 194, 228 |
| BciT130I | CCWGG | 5 cut(s) | 459, 765, 792, 851, 1284 |
| BciVI | GTATCC | 1 cut(s) | 856 |
| BcnI | CCSGG | 2 cut(s) | 58, 59 |
| BcoDI | GTCTC | 4 cut(s) | 47, 86, 765, 1173 |
| BfaI | CTAG | 2 cut(s) | 894, 963 |
| BfmI | CTRYAG | 3 cut(s) | 910, 1200, 1438 |
| BfuI | GTATCC | 1 cut(s) | 856 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 255 |
| BlpI | GCTNAGC | 1 cut(s) | 123 |
| Bme1390I | CCNGG | 7 cut(s) | 58, 59, 459, 765, 792, 851, 1284 |
| Bme18I | GGWCC | 1 cut(s) | 821 |
| BmeT110I | CYCGRG | 2 cut(s) | 57, 266 |
| BmgT120I | GGNCC | 5 cut(s) | 61, 234, 256, 257, 821 |
| BmiI | GGNNCC | 3 cut(s) | 62, 257, 258 |
| BmrFI | CCNGG | 7 cut(s) | 58, 59, 459, 765, 792, 851, 1284 |
| BmsI | GCATC | 5 cut(s) | 740, 916, 937, 985, 1352 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 83, 115 |
| BpmI | CTGGAG | 3 cut(s) | 699, 747, 1155 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 123 |
| Bpu14I | TTCGAA | 1 cut(s) | 107 |
| BpuEI | CTTGAG | 1 cut(s) | 1490 |
| BpuMI | CCSGG | 2 cut(s) | 58, 59 |
| BsaAI | YACGTR | 1 cut(s) | 953 |
| BsaBI | GATNNNNATC | 2 cut(s) | 999, 1020 |
| BsaI | GGTCTC | 3 cut(s) | 47, 86, 1173 |
| BsaJI | CCNNGG | 8 cut(s) | 57, 58, 78, 458, 791, 836, 850, 1352 |
| BsaWI | WCCGGW | 1 cut(s) | 598 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 745, 775 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 63, 541, 770, 797 |
| Bse118I | RCCGGY | 1 cut(s) | 249 |
| Bse1I | ACTGG | 4 cut(s) | 212, 619, 1162, 1396 |
| Bse3DI | GCAATG | 2 cut(s) | 654, 1406 |
| Bse8I | GATNNNNATC | 2 cut(s) | 999, 1020 |
| BseAI | TCCGGA | 1 cut(s) | 598 |
| BseBI | CCWGG | 5 cut(s) | 459, 765, 792, 851, 1284 |
| BseDI | CCNNGG | 8 cut(s) | 57, 58, 78, 458, 791, 836, 850, 1352 |
| BseGI | GGATG | 6 cut(s) | 454, 550, 802, 952, 1181, 1213 |
| BseJI | GATNNNNATC | 2 cut(s) | 999, 1020 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 63, 541, 770, 797 |
| BseMI | GCAATG | 2 cut(s) | 654, 1406 |
| BseMII | CTCAG | 3 cut(s) | 137, 300, 413 |
| BseNI | ACTGG | 4 cut(s) | 212, 619, 1162, 1396 |
| BsePI | GCGCGC | 1 cut(s) | 416 |
| BseRI | GAGGAG | 2 cut(s) | 1269, 1466 |
| BseSI | GKGCMC | 2 cut(s) | 260, 1311 |
| Bsh1236I | CGCG | 1 cut(s) | 418 |
| BshFI | GGCC | 5 cut(s) | 63, 235, 258, 1212, 1444 |
| BsiHKAI | GWGCWC | 2 cut(s) | 393, 675 |
| BsiHKCI | CYCGRG | 2 cut(s) | 57, 266 |
| BsiSI | CCGG | 5 cut(s) | 38, 58, 64, 250, 599 |
| BslFI | GGGAC | 3 cut(s) | 176, 1328, 1417 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 63, 541, 770, 797 |
| BsmAI | GTCTC | 4 cut(s) | 47, 86, 765, 1173 |
| BsmFI | GGGAC | 3 cut(s) | 176, 1328, 1417 |
| BsmI | GAATGC | 1 cut(s) | 1345 |
| BsnI | GGCC | 5 cut(s) | 63, 235, 258, 1212, 1444 |
| Bso31I | GGTCTC | 3 cut(s) | 47, 86, 1173 |
| BsoBI | CYCGRG | 2 cut(s) | 57, 266 |
| Bsp119I | TTCGAA | 1 cut(s) | 107 |
| Bsp120I | GGGCCC | 1 cut(s) | 256 |
| Bsp1286I | GDGCHC | 4 cut(s) | 260, 393, 675, 1311 |
| Bsp13I | TCCGGA | 1 cut(s) | 598 |
| Bsp143I | GATC | 8 cut(s) | 718, 742, 767, 776, 1000, 1060, 1081, 1434 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 123 |
| Bsp19I | CCATGG | 1 cut(s) | 1352 |
| BspACI | CCGC | 5 cut(s) | 260, 295, 381, 386, 1087 |
| BspANI | GGCC | 5 cut(s) | 63, 235, 258, 1212, 1444 |
| BspCNI | CTCAG | 3 cut(s) | 136, 301, 412 |
| BspEI | TCCGGA | 1 cut(s) | 598 |
| BspFNI | CGCG | 1 cut(s) | 418 |
| BspLI | GGNNCC | 3 cut(s) | 62, 257, 258 |
| BspMAI | CTGCAG | 1 cut(s) | 1204 |
| BspPI | GGATC | 4 cut(s) | 726, 737, 775, 784 |
| BspQI | GCTCTTC | 1 cut(s) | 1458 |
| BspT104I | TTCGAA | 1 cut(s) | 107 |
| BspTNI | GGTCTC | 3 cut(s) | 47, 86, 1173 |
| BsrDI | GCAATG | 2 cut(s) | 654, 1406 |
| BsrFI | RCCGGY | 1 cut(s) | 249 |
| BsrI | ACTGG | 4 cut(s) | 212, 619, 1162, 1396 |
| BssAI | RCCGGY | 1 cut(s) | 249 |
| BssECI | CCNNGG | 8 cut(s) | 57, 58, 78, 458, 791, 836, 850, 1352 |
| BssHII | GCGCGC | 1 cut(s) | 416 |
| BssMI | GATC | 8 cut(s) | 718, 742, 767, 776, 1000, 1060, 1081, 1434 |
| BssT1I | CCWWGG | 3 cut(s) | 78, 836, 1352 |
| Bst2UI | CCWGG | 5 cut(s) | 459, 765, 792, 851, 1284 |
| Bst4CI | ACNGT | 8 cut(s) | 173, 524, 566, 697, 868, 1010, 1360, 1382 |
| Bst6I | CTCTTC | 3 cut(s) | 106, 1443, 1458 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 638 |
| BstBAI | YACGTR | 1 cut(s) | 953 |
| BstBI | TTCGAA | 1 cut(s) | 107 |
| BstC8I | GCNNGC | 7 cut(s) | 213, 260, 273, 293, 418, 931, 1302 |
| BstDEI | CTNAG | 4 cut(s) | 123, 309, 399, 498 |
| BstDSI | CCRYGG | 1 cut(s) | 1352 |
| BstF5I | GGATG | 6 cut(s) | 454, 550, 802, 952, 1181, 1213 |
| BstFNI | CGCG | 1 cut(s) | 418 |
| BstHHI | GCGC | 5 cut(s) | 418, 420, 991, 1115, 1422 |
| BstKTI | GATC | 8 cut(s) | 721, 745, 770, 779, 1003, 1063, 1084, 1437 |
| BstMAI | GTCTC | 4 cut(s) | 47, 86, 765, 1173 |
| BstMBI | GATC | 8 cut(s) | 718, 742, 767, 776, 1000, 1060, 1081, 1434 |
| BstNI | CCWGG | 5 cut(s) | 459, 765, 792, 851, 1284 |
| BstNSI | RCATGY | 3 cut(s) | 1078, 1304, 1490 |
| BstSCI | CCNGG | 7 cut(s) | 56, 57, 457, 763, 790, 849, 1282 |
| BstSFI | CTRYAG | 3 cut(s) | 910, 1200, 1438 |
| BstSLI | GKGCMC | 2 cut(s) | 260, 1311 |
| BstUI | CGCG | 1 cut(s) | 418 |
| BstX2I | RGATCY | 2 cut(s) | 742, 767 |
| BstYI | RGATCY | 2 cut(s) | 742, 767 |
| BsuI | GTATCC | 1 cut(s) | 856 |
| BsuRI | GGCC | 5 cut(s) | 63, 235, 258, 1212, 1444 |
| BtgI | CCRYGG | 1 cut(s) | 1352 |
| BtsCI | GGATG | 6 cut(s) | 454, 550, 802, 952, 1181, 1213 |
| BtsIMutI | CAGTG | 5 cut(s) | 182, 702, 873, 1006, 1169 |
| Cac8I | GCNNGC | 7 cut(s) | 213, 260, 273, 293, 418, 931, 1302 |
| CaiI | CAGNNNCTG | 1 cut(s) | 770 |
| CfoI | GCGC | 5 cut(s) | 418, 420, 991, 1115, 1422 |
| Cfr10I | RCCGGY | 1 cut(s) | 249 |
| Cfr13I | GGNCC | 5 cut(s) | 61, 234, 256, 257, 821 |
| Cfr9I | CCCGGG | 1 cut(s) | 57 |
| CseI | GACGC | 1 cut(s) | 145 |
| Csp6I | GTAC | 2 cut(s) | 169, 439 |
| CviAII | CATG | 8 cut(s) | 569, 857, 1028, 1075, 1301, 1353, 1423, 1487 |
| CviQI | GTAC | 2 cut(s) | 169, 439 |
| DdeI | CTNAG | 4 cut(s) | 123, 309, 399, 498 |
| DpnI | GATC | 8 cut(s) | 720, 744, 769, 778, 1002, 1062, 1083, 1436 |
| DpnII | GATC | 8 cut(s) | 718, 742, 767, 776, 1000, 1060, 1081, 1434 |
| DraI | TTTAAA | 1 cut(s) | 1218 |
| Eam1104I | CTCTTC | 3 cut(s) | 106, 1443, 1458 |
| EarI | CTCTTC | 3 cut(s) | 106, 1443, 1458 |
| EciI | GGCGGA | 1 cut(s) | 1102 |
| Eco130I | CCWWGG | 3 cut(s) | 78, 836, 1352 |
| Eco147I | AGGCCT | 1 cut(s) | 1444 |
| Eco24I | GRGCYC | 1 cut(s) | 260 |
| Eco31I | GGTCTC | 3 cut(s) | 47, 86, 1173 |
| Eco47I | GGWCC | 1 cut(s) | 821 |
| Eco57I | CTGAAG | 1 cut(s) | 1467 |
| Eco72I | CACGTG | 1 cut(s) | 953 |
| Eco88I | CYCGRG | 2 cut(s) | 57, 266 |
| EcoO109I | RGGNCCY | 1 cut(s) | 256 |
| EcoRII | CCWGG | 5 cut(s) | 457, 763, 790, 849, 1282 |
| EcoT14I | CCWWGG | 3 cut(s) | 78, 836, 1352 |
| EcoT22I | ATGCAT | 1 cut(s) | 1345 |
| EcoT38I | GRGCYC | 1 cut(s) | 260 |
| ErhI | CCWWGG | 3 cut(s) | 78, 836, 1352 |
| FaeI | CATG | 8 cut(s) | 572, 860, 1031, 1078, 1304, 1356, 1426, 1490 |
| FaqI | GGGAC | 3 cut(s) | 176, 1328, 1417 |
| FatI | CATG | 8 cut(s) | 568, 856, 1027, 1074, 1300, 1352, 1422, 1486 |
| FauI | CCCGC | 1 cut(s) | 267 |
| FblI | GTMKAC | 2 cut(s) | 159, 846 |
| FokI | GGATG | 6 cut(s) | 441, 557, 809, 959, 1168, 1220 |
| FriOI | GRGCYC | 1 cut(s) | 260 |
| FspBI | CTAG | 2 cut(s) | 894, 963 |
| GlaI | GCGC | 5 cut(s) | 417, 419, 990, 1114, 1421 |
| GsuI | CTGGAG | 3 cut(s) | 699, 747, 1155 |
| HaeIII | GGCC | 5 cut(s) | 63, 235, 258, 1212, 1444 |
| HapII | CCGG | 5 cut(s) | 38, 58, 64, 250, 599 |
| HgaI | GACGC | 1 cut(s) | 145 |
| HhaI | GCGC | 5 cut(s) | 418, 420, 991, 1115, 1422 |
| Hin1II | CATG | 8 cut(s) | 572, 860, 1031, 1078, 1304, 1356, 1426, 1490 |
| Hin6I | GCGC | 5 cut(s) | 416, 418, 989, 1113, 1420 |
| HinP1I | GCGC | 5 cut(s) | 416, 418, 989, 1113, 1420 |
| HincII | GTYRAC | 1 cut(s) | 160 |
| HindII | GTYRAC | 1 cut(s) | 160 |
| HinfI | GANTC | 4 cut(s) | 286, 474, 1021, 1090 |
| HpaII | CCGG | 5 cut(s) | 38, 58, 64, 250, 599 |
| HphI | GGTGA | 2 cut(s) | 414, 932 |
| Hpy166II | GTNNAC | 3 cut(s) | 160, 469, 847 |
| Hpy188I | TCNGA | 5 cut(s) | 310, 333, 479, 1348, 1375 |
| Hpy188III | TCNNGA | 6 cut(s) | 527, 599, 623, 678, 716, 1172 |
| Hpy8I | GTNNAC | 3 cut(s) | 160, 469, 847 |
| Hpy99I | CGWCG | 3 cut(s) | 16, 161, 164 |
| HpyAV | CCTTC | 5 cut(s) | 43, 112, 834, 1231, 1243 |
| HpyCH4III | ACNGT | 8 cut(s) | 173, 524, 566, 697, 868, 1010, 1360, 1382 |
| HpyCH4IV | ACGT | 2 cut(s) | 370, 952 |
| HpyCH4V | TGCA | 9 cut(s) | 350, 632, 647, 833, 950, 1202, 1304, 1343, 1411 |
| HpyF3I | CTNAG | 4 cut(s) | 123, 309, 399, 498 |
| HpySE526I | ACGT | 2 cut(s) | 370, 952 |
| Hsp92II | CATG | 8 cut(s) | 572, 860, 1031, 1078, 1304, 1356, 1426, 1490 |
| HspAI | GCGC | 5 cut(s) | 416, 418, 989, 1113, 1420 |
| Kpn2I | TCCGGA | 1 cut(s) | 598 |
| Kzo9I | GATC | 8 cut(s) | 718, 742, 767, 776, 1000, 1060, 1081, 1434 |
| LguI | GCTCTTC | 1 cut(s) | 1458 |
| LmnI | GCTCC | 2 cut(s) | 388, 1252 |
| LweI | GCATC | 5 cut(s) | 740, 916, 937, 985, 1352 |
| MaeI | CTAG | 2 cut(s) | 894, 963 |
| MaeII | ACGT | 2 cut(s) | 370, 952 |
| MaeIII | GTNAC | 2 cut(s) | 920, 1482 |
| MalI | GATC | 8 cut(s) | 720, 744, 769, 778, 1002, 1062, 1083, 1436 |
| MboI | GATC | 8 cut(s) | 718, 742, 767, 776, 1000, 1060, 1081, 1434 |
| MflI | RGATCY | 2 cut(s) | 742, 767 |
| MhlI | GDGCHC | 4 cut(s) | 260, 393, 675, 1311 |
| MluCI | AATT | 4 cut(s) | 352, 635, 780, 1127 |
| MmeI | TCCRAC | 1 cut(s) | 680 |
| Mph1103I | ATGCAT | 1 cut(s) | 1345 |
| MroI | TCCGGA | 1 cut(s) | 598 |
| MseI | TTAA | 2 cut(s) | 786, 1217 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1338 |
| MspA1I | CMGCKG | 2 cut(s) | 295, 383 |
| MspI | CCGG | 5 cut(s) | 38, 58, 64, 250, 599 |
| MspR9I | CCNGG | 7 cut(s) | 58, 59, 459, 765, 792, 851, 1284 |
| Mva1269I | GAATGC | 1 cut(s) | 1345 |
| MvaI | CCWGG | 5 cut(s) | 459, 765, 792, 851, 1284 |
| MvnI | CGCG | 1 cut(s) | 418 |
| NciI | CCSGG | 2 cut(s) | 58, 59 |
| NcoI | CCATGG | 1 cut(s) | 1352 |
| NdeII | GATC | 8 cut(s) | 718, 742, 767, 776, 1000, 1060, 1081, 1434 |
| NlaIII | CATG | 8 cut(s) | 572, 860, 1031, 1078, 1304, 1356, 1426, 1490 |
| NlaIV | GGNNCC | 3 cut(s) | 62, 257, 258 |
| NmuCI | GTSAC | 2 cut(s) | 920, 1482 |
| NsiI | ATGCAT | 1 cut(s) | 1345 |
| NspI | RCATGY | 3 cut(s) | 1078, 1304, 1490 |
| NspV | TTCGAA | 1 cut(s) | 107 |
| PaeI | GCATGC | 1 cut(s) | 1304 |
| PaeR7I | CTCGAG | 1 cut(s) | 266 |
| PauI | GCGCGC | 1 cut(s) | 416 |
| PceI | AGGCCT | 1 cut(s) | 1444 |
| PciI | ACATGT | 1 cut(s) | 1486 |
| PciSI | GCTCTTC | 1 cut(s) | 1458 |
| PctI | GAATGC | 1 cut(s) | 1345 |
| PfeI | GAWTC | 4 cut(s) | 286, 474, 1021, 1090 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 770 |
| PfoI | TCCNGGA | 1 cut(s) | 763 |
| PmaCI | CACGTG | 1 cut(s) | 953 |
| PmlI | CACGTG | 1 cut(s) | 953 |
| Ppu21I | YACGTR | 1 cut(s) | 953 |
| PscI | ACATGT | 1 cut(s) | 1486 |
| PsiI | TTATAA | 1 cut(s) | 1125 |
| Psp6I | CCWGG | 5 cut(s) | 457, 763, 790, 849, 1282 |
| PspCI | CACGTG | 1 cut(s) | 953 |
| PspGI | CCWGG | 5 cut(s) | 457, 763, 790, 849, 1282 |
| PspN4I | GGNNCC | 3 cut(s) | 62, 257, 258 |
| PspOMI | GGGCCC | 1 cut(s) | 256 |
| PspPI | GGNCC | 5 cut(s) | 61, 234, 256, 257, 821 |
| PspXI | VCTCGAGB | 1 cut(s) | 266 |
| PstI | CTGCAG | 1 cut(s) | 1204 |
| PstNI | CAGNNNCTG | 1 cut(s) | 770 |
| PsuI | RGATCY | 2 cut(s) | 742, 767 |
| PteI | GCGCGC | 1 cut(s) | 416 |
| RsaI | GTAC | 2 cut(s) | 170, 440 |
| RsaNI | GTAC | 2 cut(s) | 169, 439 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1338 |
| SalI | GTCGAC | 1 cut(s) | 158 |
| SapI | GCTCTTC | 1 cut(s) | 1458 |
| SaqAI | TTAA | 2 cut(s) | 786, 1217 |
| Sau3AI | GATC | 8 cut(s) | 718, 742, 767, 776, 1000, 1060, 1081, 1434 |
| Sau96I | GGNCC | 5 cut(s) | 61, 234, 256, 257, 821 |
| ScrFI | CCNGG | 7 cut(s) | 58, 59, 459, 765, 792, 851, 1284 |
| SduI | GDGCHC | 4 cut(s) | 260, 393, 675, 1311 |
| SfaNI | GCATC | 5 cut(s) | 740, 916, 937, 985, 1352 |
| SfcI | CTRYAG | 3 cut(s) | 910, 1200, 1438 |
| Sfr274I | CTCGAG | 1 cut(s) | 266 |
| SfuI | TTCGAA | 1 cut(s) | 107 |
| SgrDI | CGTCGACG | 1 cut(s) | 158 |
| SinI | GGWCC | 1 cut(s) | 821 |
| SlaI | CTCGAG | 1 cut(s) | 266 |
| SmaI | CCCGGG | 1 cut(s) | 59 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1338 |
| SmlI | CTYRAG | 2 cut(s) | 266, 1469 |
| SmoI | CTYRAG | 2 cut(s) | 266, 1469 |
| SphI | GCATGC | 1 cut(s) | 1304 |
| Sse9I | AATT | 4 cut(s) | 352, 635, 780, 1127 |
| SseBI | AGGCCT | 1 cut(s) | 1444 |
| SsiI | CCGC | 5 cut(s) | 260, 295, 381, 386, 1087 |
| SspMI | CTAG | 2 cut(s) | 894, 963 |
| StuI | AGGCCT | 1 cut(s) | 1444 |
| StyD4I | CCNGG | 7 cut(s) | 56, 57, 457, 763, 790, 849, 1282 |
| StyI | CCWWGG | 3 cut(s) | 78, 836, 1352 |
| TaaI | ACNGT | 8 cut(s) | 173, 524, 566, 697, 868, 1010, 1360, 1382 |
| TaiI | ACGT | 2 cut(s) | 373, 955 |
| TaqI | TCGA | 3 cut(s) | 107, 159, 267 |
| TasI | AATT | 4 cut(s) | 352, 635, 780, 1127 |
| TatI | WGTACW | 2 cut(s) | 168, 438 |
| TauI | GCSGC | 2 cut(s) | 298, 383 |
| TfiI | GAWTC | 4 cut(s) | 286, 474, 1021, 1090 |
| Tru1I | TTAA | 2 cut(s) | 786, 1217 |
| Tru9I | TTAA | 2 cut(s) | 786, 1217 |
| TscAI | CASTG | 5 cut(s) | 182, 702, 873, 1013, 1169 |
| TseFI | GTSAC | 2 cut(s) | 920, 1482 |
| Tsp45I | GTSAC | 2 cut(s) | 920, 1482 |
| TspDTI | ATGAA | 4 cut(s) | 128, 423, 819, 1322 |
| TspMI | CCCGGG | 1 cut(s) | 57 |
| TspRI | CASTG | 5 cut(s) | 182, 702, 873, 1013, 1169 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 770 |
| VpaK11BI | GGWCC | 1 cut(s) | 821 |
| XapI | RAATTY | 2 cut(s) | 635, 1127 |
| XceI | RCATGY | 3 cut(s) | 1078, 1304, 1490 |
| XhoI | CTCGAG | 1 cut(s) | 266 |
| XmaI | CCCGGG | 1 cut(s) | 57 |
| XmiI | GTMKAC | 2 cut(s) | 159, 846 |
| XspI | CTAG | 2 cut(s) | 894, 963 |
| Zsp2I | ATGCAT | 1 cut(s) | 1345 |