TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C-JID | PF20160 | 158 - 299 | 3.2e-19 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 438, 1056 |
| Acc16I | TGCGCA | 1 cut(s) | 98 |
| AccII | CGCG | 1 cut(s) | 578 |
| AciI | CCGC | 3 cut(s) | 578, 610, 643 |
| AclI | AACGTT | 1 cut(s) | 915 |
| AclWI | GGATC | 1 cut(s) | 297 |
| AcoI | YGGCCR | 3 cut(s) | 27, 48, 835 |
| AcsI | RAATTY | 4 cut(s) | 163, 486, 815, 942 |
| AcyI | GRCGYC | 1 cut(s) | 518 |
| AfaI | GTAC | 3 cut(s) | 70, 600, 848 |
| AgeI | ACCGGT | 1 cut(s) | 622 |
| AgsI | TTSAA | 5 cut(s) | 228, 710, 805, 815, 827 |
| AjnI | CCWGG | 3 cut(s) | 64, 475, 544 |
| AluBI | AGCT | 5 cut(s) | 35, 56, 402, 446, 728 |
| AluI | AGCT | 5 cut(s) | 35, 56, 402, 446, 728 |
| Alw21I | GWGCWC | 1 cut(s) | 404 |
| Alw26I | GTCTC | 2 cut(s) | 785, 1017 |
| AlwI | GGATC | 1 cut(s) | 297 |
| AoxI | GGCC | 5 cut(s) | 27, 48, 579, 835, 1000 |
| ApeKI | GCWGC | 3 cut(s) | 250, 339, 968 |
| ApoI | RAATTY | 4 cut(s) | 163, 486, 815, 942 |
| AsiGI | ACCGGT | 1 cut(s) | 622 |
| AspLEI | GCGC | 2 cut(s) | 99, 691 |
| AspS9I | GGNCC | 2 cut(s) | 868, 1028 |
| AsuHPI | GGTGA | 2 cut(s) | 632, 731 |
| AvaII | GGWCC | 2 cut(s) | 868, 1028 |
| BalI | TGGCCA | 1 cut(s) | 837 |
| BanII | GRGCYC | 1 cut(s) | 404 |
| Bbv12I | GWGCWC | 1 cut(s) | 404 |
| BbvI | GCAGC | 3 cut(s) | 237, 326, 980 |
| BccI | CCATC | 3 cut(s) | 179, 329, 662 |
| BciT130I | CCWGG | 3 cut(s) | 66, 477, 546 |
| BcoDI | GTCTC | 2 cut(s) | 785, 1017 |
| BfaI | CTAG | 4 cut(s) | 36, 368, 447, 1032 |
| BisI | GCNGC | 4 cut(s) | 251, 340, 579, 969 |
| BlsI | GCNGC | 4 cut(s) | 252, 341, 580, 970 |
| Bme1390I | CCNGG | 3 cut(s) | 66, 477, 546 |
| Bme18I | GGWCC | 2 cut(s) | 868, 1028 |
| BmgT120I | GGNCC | 2 cut(s) | 868, 1028 |
| BmiI | GGNNCC | 2 cut(s) | 869, 1062 |
| BmrFI | CCNGG | 3 cut(s) | 66, 477, 546 |
| BmsI | GCATC | 1 cut(s) | 550 |
| Bsa29I | ATCGAT | 1 cut(s) | 534 |
| BsaBI | GATNNNNATC | 1 cut(s) | 540 |
| BsaHI | GRCGYC | 1 cut(s) | 518 |
| BsaJI | CCNNGG | 2 cut(s) | 64, 838 |
| BsaWI | WCCGGW | 1 cut(s) | 622 |
| Bse118I | RCCGGY | 1 cut(s) | 622 |
| Bse1I | ACTGG | 1 cut(s) | 613 |
| Bse3DI | GCAATG | 1 cut(s) | 661 |
| Bse8I | GATNNNNATC | 1 cut(s) | 540 |
| BseBI | CCWGG | 3 cut(s) | 66, 477, 546 |
| BseCI | ATCGAT | 1 cut(s) | 534 |
| BseDI | CCNNGG | 2 cut(s) | 64, 838 |
| BseGI | GGATG | 2 cut(s) | 321, 541 |
| BseJI | GATNNNNATC | 1 cut(s) | 540 |
| BseMI | GCAATG | 1 cut(s) | 661 |
| BseMII | CTCAG | 2 cut(s) | 387, 1022 |
| BseNI | ACTGG | 1 cut(s) | 613 |
| BseRI | GAGGAG | 2 cut(s) | 1035, 1038 |
| BseX3I | CGGCCG | 1 cut(s) | 48 |
| BseXI | GCAGC | 3 cut(s) | 237, 326, 980 |
| BseYI | CCCAGC | 1 cut(s) | 718 |
| Bsh1236I | CGCG | 1 cut(s) | 578 |
| Bsh1285I | CGRYCG | 1 cut(s) | 51 |
| BshFI | GGCC | 5 cut(s) | 29, 50, 581, 837, 1002 |
| BshTI | ACCGGT | 1 cut(s) | 622 |
| BshVI | ATCGAT | 1 cut(s) | 534 |
| BsiEI | CGRYCG | 1 cut(s) | 51 |
| BsiHKAI | GWGCWC | 1 cut(s) | 404 |
| BsiSI | CCGG | 3 cut(s) | 30, 51, 623 |
| BslFI | GGGAC | 2 cut(s) | 464, 735 |
| BsmAI | GTCTC | 2 cut(s) | 785, 1017 |
| BsmFI | GGGAC | 2 cut(s) | 464, 735 |
| BsnI | GGCC | 5 cut(s) | 29, 50, 581, 837, 1002 |
| Bsp1286I | GDGCHC | 1 cut(s) | 404 |
| Bsp143I | GATC | 5 cut(s) | 289, 331, 502, 535, 736 |
| BspACI | CCGC | 3 cut(s) | 578, 610, 643 |
| BspANI | GGCC | 5 cut(s) | 29, 50, 581, 837, 1002 |
| BspCNI | CTCAG | 2 cut(s) | 388, 1021 |
| BspDI | ATCGAT | 1 cut(s) | 534 |
| BspFNI | CGCG | 1 cut(s) | 578 |
| BspLI | GGNNCC | 2 cut(s) | 869, 1062 |
| BspPI | GGATC | 1 cut(s) | 297 |
| BsrDI | GCAATG | 1 cut(s) | 661 |
| BsrFI | RCCGGY | 1 cut(s) | 622 |
| BsrI | ACTGG | 1 cut(s) | 613 |
| BssAI | RCCGGY | 1 cut(s) | 622 |
| BssECI | CCNNGG | 2 cut(s) | 64, 838 |
| BssMI | GATC | 5 cut(s) | 289, 331, 502, 535, 736 |
| BssNI | GRCGYC | 1 cut(s) | 518 |
| BssT1I | CCWWGG | 1 cut(s) | 838 |
| Bst2UI | CCWGG | 3 cut(s) | 66, 477, 546 |
| Bst4CI | ACNGT | 1 cut(s) | 25 |
| Bst6I | CTCTTC | 2 cut(s) | 775, 891 |
| BstACI | GRCGYC | 1 cut(s) | 518 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 651 |
| BstC8I | GCNNGC | 1 cut(s) | 138 |
| BstDEI | CTNAG | 2 cut(s) | 396, 1008 |
| BstF5I | GGATG | 2 cut(s) | 321, 541 |
| BstFNI | CGCG | 1 cut(s) | 578 |
| BstHHI | GCGC | 2 cut(s) | 99, 691 |
| BstKTI | GATC | 5 cut(s) | 292, 334, 505, 538, 739 |
| BstMAI | GTCTC | 2 cut(s) | 785, 1017 |
| BstMBI | GATC | 5 cut(s) | 289, 331, 502, 535, 736 |
| BstMCI | CGRYCG | 1 cut(s) | 51 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 584, 593, 651, 695 |
| BstNI | CCWGG | 3 cut(s) | 66, 477, 546 |
| BstNSI | RCATGY | 1 cut(s) | 140 |
| BstSCI | CCNGG | 3 cut(s) | 64, 475, 544 |
| BstUI | CGCG | 1 cut(s) | 578 |
| BstV1I | GCAGC | 3 cut(s) | 237, 326, 980 |
| BstX2I | RGATCY | 1 cut(s) | 289 |
| BstYI | RGATCY | 1 cut(s) | 289 |
| BstZI | CGGCCG | 1 cut(s) | 48 |
| Bsu15I | ATCGAT | 1 cut(s) | 534 |
| BsuRI | GGCC | 5 cut(s) | 29, 50, 581, 837, 1002 |
| BsuTUI | ATCGAT | 1 cut(s) | 534 |
| BtsCI | GGATG | 2 cut(s) | 321, 541 |
| BtsI | GCAGTG | 2 cut(s) | 84, 298 |
| BtsIMutI | CAGTG | 2 cut(s) | 84, 298 |
| Cac8I | GCNNGC | 1 cut(s) | 138 |
| CfoI | GCGC | 2 cut(s) | 99, 691 |
| Cfr10I | RCCGGY | 1 cut(s) | 622 |
| Cfr13I | GGNCC | 2 cut(s) | 868, 1028 |
| ClaI | ATCGAT | 1 cut(s) | 534 |
| CseI | GACGC | 1 cut(s) | 526 |
| Csp6I | GTAC | 3 cut(s) | 69, 599, 847 |
| CspAI | ACCGGT | 1 cut(s) | 622 |
| CviAII | CATG | 6 cut(s) | 137, 568, 602, 755, 785, 1016 |
| CviQI | GTAC | 3 cut(s) | 69, 599, 847 |
| DdeI | CTNAG | 2 cut(s) | 396, 1008 |
| DpnI | GATC | 5 cut(s) | 291, 333, 504, 537, 738 |
| DpnII | GATC | 5 cut(s) | 289, 331, 502, 535, 736 |
| EaeI | YGGCCR | 3 cut(s) | 27, 48, 835 |
| EagI | CGGCCG | 1 cut(s) | 48 |
| Eam1104I | CTCTTC | 2 cut(s) | 775, 891 |
| EarI | CTCTTC | 2 cut(s) | 775, 891 |
| Ecl136II | GAGCTC | 1 cut(s) | 402 |
| EclXI | CGGCCG | 1 cut(s) | 48 |
| Eco130I | CCWWGG | 1 cut(s) | 838 |
| Eco147I | AGGCCT | 1 cut(s) | 1002 |
| Eco24I | GRGCYC | 1 cut(s) | 404 |
| Eco32I | GATATC | 1 cut(s) | 240 |
| Eco47I | GGWCC | 2 cut(s) | 868, 1028 |
| Eco52I | CGGCCG | 1 cut(s) | 48 |
| Eco53kI | GAGCTC | 1 cut(s) | 402 |
| EcoICRI | GAGCTC | 1 cut(s) | 402 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1028 |
| EcoRII | CCWGG | 3 cut(s) | 64, 475, 544 |
| EcoRV | GATATC | 1 cut(s) | 240 |
| EcoT14I | CCWWGG | 1 cut(s) | 838 |
| EcoT38I | GRGCYC | 1 cut(s) | 404 |
| ErhI | CCWWGG | 1 cut(s) | 838 |
| FaeI | CATG | 6 cut(s) | 140, 571, 605, 758, 788, 1019 |
| FaqI | GGGAC | 2 cut(s) | 464, 735 |
| FatI | CATG | 6 cut(s) | 136, 567, 601, 754, 784, 1015 |
| Fnu4HI | GCNGC | 4 cut(s) | 251, 340, 579, 969 |
| FokI | GGATG | 2 cut(s) | 308, 528 |
| FriOI | GRGCYC | 1 cut(s) | 404 |
| Fsp4HI | GCNGC | 4 cut(s) | 251, 340, 579, 969 |
| FspBI | CTAG | 4 cut(s) | 36, 368, 447, 1032 |
| FspI | TGCGCA | 1 cut(s) | 98 |
| GlaI | GCGC | 2 cut(s) | 98, 690 |
| GluI | GCNGC | 4 cut(s) | 251, 340, 579, 969 |
| GsaI | CCCAGC | 1 cut(s) | 722 |
| HaeIII | GGCC | 5 cut(s) | 29, 50, 581, 837, 1002 |
| HapII | CCGG | 3 cut(s) | 30, 51, 623 |
| HgaI | GACGC | 1 cut(s) | 526 |
| HhaI | GCGC | 2 cut(s) | 99, 691 |
| Hin1I | GRCGYC | 1 cut(s) | 518 |
| Hin1II | CATG | 6 cut(s) | 140, 571, 605, 758, 788, 1019 |
| Hin6I | GCGC | 2 cut(s) | 97, 689 |
| HinP1I | GCGC | 2 cut(s) | 97, 689 |
| HincII | GTYRAC | 2 cut(s) | 409, 919 |
| HindII | GTYRAC | 2 cut(s) | 409, 919 |
| HinfI | GANTC | 4 cut(s) | 16, 452, 573, 956 |
| HpaI | GTTAAC | 1 cut(s) | 919 |
| HpaII | CCGG | 3 cut(s) | 30, 51, 623 |
| HphI | GGTGA | 2 cut(s) | 632, 731 |
| Hpy166II | GTNNAC | 3 cut(s) | 269, 409, 919 |
| Hpy188I | TCNGA | 4 cut(s) | 208, 736, 928, 1080 |
| Hpy188III | TCNNGA | 5 cut(s) | 228, 368, 395, 491, 960 |
| Hpy8I | GTNNAC | 3 cut(s) | 269, 409, 919 |
| Hpy99I | CGWCG | 1 cut(s) | 520 |
| HpyAV | CCTTC | 5 cut(s) | 77, 264, 475, 531, 1013 |
| HpyCH4III | ACNGT | 1 cut(s) | 25 |
| HpyCH4IV | ACGT | 2 cut(s) | 849, 915 |
| HpyCH4V | TGCA | 9 cut(s) | 113, 130, 136, 140, 199, 303, 541, 596, 654 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 584, 593, 651, 695 |
| HpyF3I | CTNAG | 2 cut(s) | 396, 1008 |
| HpySE526I | ACGT | 2 cut(s) | 849, 915 |
| Hsp92I | GRCGYC | 1 cut(s) | 518 |
| Hsp92II | CATG | 6 cut(s) | 140, 571, 605, 758, 788, 1019 |
| HspAI | GCGC | 2 cut(s) | 97, 689 |
| KspAI | GTTAAC | 1 cut(s) | 919 |
| Kzo9I | GATC | 5 cut(s) | 289, 331, 502, 535, 736 |
| LmnI | GCTCC | 2 cut(s) | 32, 53 |
| Lsp1109I | GCAGC | 3 cut(s) | 237, 326, 980 |
| LweI | GCATC | 1 cut(s) | 550 |
| MaeI | CTAG | 4 cut(s) | 36, 368, 447, 1032 |
| MaeII | ACGT | 2 cut(s) | 849, 915 |
| MalI | GATC | 5 cut(s) | 291, 333, 504, 537, 738 |
| MboI | GATC | 5 cut(s) | 289, 331, 502, 535, 736 |
| MboII | GAAGA | 3 cut(s) | 762, 868, 908 |
| MflI | RGATCY | 1 cut(s) | 289 |
| MhlI | GDGCHC | 1 cut(s) | 404 |
| MlsI | TGGCCA | 1 cut(s) | 837 |
| MluCI | AATT | 8 cut(s) | 163, 359, 380, 486, 760, 810, 815, 942 |
| MluNI | TGGCCA | 1 cut(s) | 837 |
| MlyI | GAGTC | 2 cut(s) | 25, 446 |
| MmeI | TCCRAC | 1 cut(s) | 267 |
| Mox20I | TGGCCA | 1 cut(s) | 837 |
| MscI | TGGCCA | 1 cut(s) | 837 |
| MseI | TTAA | 6 cut(s) | 278, 353, 555, 680, 903, 918 |
| MslI | CAYNNNNRTG | 1 cut(s) | 135 |
| Msp20I | TGGCCA | 1 cut(s) | 837 |
| MspI | CCGG | 3 cut(s) | 30, 51, 623 |
| MspR9I | CCNGG | 3 cut(s) | 66, 477, 546 |
| MvaI | CCWGG | 3 cut(s) | 66, 477, 546 |
| MvnI | CGCG | 1 cut(s) | 578 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 584, 593, 651, 695 |
| NdeII | GATC | 5 cut(s) | 289, 331, 502, 535, 736 |
| NlaIII | CATG | 6 cut(s) | 140, 571, 605, 758, 788, 1019 |
| NlaIV | GGNNCC | 2 cut(s) | 869, 1062 |
| NmeAIII | GCCGAG | 2 cut(s) | 26, 315 |
| NsbI | TGCGCA | 1 cut(s) | 98 |
| NspI | RCATGY | 1 cut(s) | 140 |
| PaeI | GCATGC | 1 cut(s) | 140 |
| PceI | AGGCCT | 1 cut(s) | 1002 |
| PfeI | GAWTC | 2 cut(s) | 573, 956 |
| PfoI | TCCNGGA | 1 cut(s) | 475 |
| PinAI | ACCGGT | 1 cut(s) | 622 |
| PkrI | GCNGC | 4 cut(s) | 252, 341, 580, 970 |
| PleI | GAGTC | 2 cut(s) | 24, 446 |
| PpsI | GAGTC | 2 cut(s) | 24, 446 |
| PpuMI | RGGWCCY | 1 cut(s) | 1028 |
| PsiI | TTATAA | 2 cut(s) | 438, 1056 |
| Psp124BI | GAGCTC | 1 cut(s) | 404 |
| Psp1406I | AACGTT | 1 cut(s) | 915 |
| Psp5II | RGGWCCY | 1 cut(s) | 1028 |
| Psp6I | CCWGG | 3 cut(s) | 64, 475, 544 |
| PspFI | CCCAGC | 1 cut(s) | 718 |
| PspGI | CCWGG | 3 cut(s) | 64, 475, 544 |
| PspN4I | GGNNCC | 2 cut(s) | 869, 1062 |
| PspPI | GGNCC | 2 cut(s) | 868, 1028 |
| PspPPI | RGGWCCY | 1 cut(s) | 1028 |
| PsuI | RGATCY | 1 cut(s) | 289 |
| RsaI | GTAC | 3 cut(s) | 70, 600, 848 |
| RsaNI | GTAC | 3 cut(s) | 69, 599, 847 |
| RseI | CAYNNNNRTG | 1 cut(s) | 135 |
| SacI | GAGCTC | 1 cut(s) | 404 |
| SaqAI | TTAA | 6 cut(s) | 278, 353, 555, 680, 903, 918 |
| SatI | GCNGC | 4 cut(s) | 251, 340, 579, 969 |
| Sau3AI | GATC | 5 cut(s) | 289, 331, 502, 535, 736 |
| Sau96I | GGNCC | 2 cut(s) | 868, 1028 |
| SchI | GAGTC | 2 cut(s) | 25, 446 |
| ScrFI | CCNGG | 3 cut(s) | 66, 477, 546 |
| SduI | GDGCHC | 1 cut(s) | 404 |
| SfaNI | GCATC | 1 cut(s) | 550 |
| SinI | GGWCC | 2 cut(s) | 868, 1028 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 135 |
| SphI | GCATGC | 1 cut(s) | 140 |
| Sse9I | AATT | 8 cut(s) | 163, 359, 380, 486, 760, 810, 815, 942 |
| SseBI | AGGCCT | 1 cut(s) | 1002 |
| SsiI | CCGC | 3 cut(s) | 578, 610, 643 |
| SspI | AATATT | 1 cut(s) | 459 |
| SspMI | CTAG | 4 cut(s) | 36, 368, 447, 1032 |
| SstI | GAGCTC | 1 cut(s) | 404 |
| StuI | AGGCCT | 1 cut(s) | 1002 |
| StyD4I | CCNGG | 3 cut(s) | 64, 475, 544 |
| StyI | CCWWGG | 1 cut(s) | 838 |
| TaaI | ACNGT | 1 cut(s) | 25 |
| TaiI | ACGT | 2 cut(s) | 852, 918 |
| TaqI | TCGA | 3 cut(s) | 152, 501, 534 |
| TaqII | GACCGA | 1 cut(s) | 394 |
| TasI | AATT | 8 cut(s) | 163, 359, 380, 486, 760, 810, 815, 942 |
| TatI | WGTACW | 1 cut(s) | 598 |
| TauI | GCSGC | 1 cut(s) | 581 |
| TfiI | GAWTC | 2 cut(s) | 573, 956 |
| Tru1I | TTAA | 6 cut(s) | 278, 353, 555, 680, 903, 918 |
| Tru9I | TTAA | 6 cut(s) | 278, 353, 555, 680, 903, 918 |
| TscAI | CASTG | 2 cut(s) | 84, 305 |
| TseI | GCWGC | 3 cut(s) | 250, 339, 968 |
| TspDTI | ATGAA | 6 cut(s) | 173, 498, 556, 762, 810, 897 |
| TspGWI | ACGGA | 2 cut(s) | 621, 860 |
| TspRI | CASTG | 2 cut(s) | 84, 305 |
| VpaK11BI | GGWCC | 2 cut(s) | 868, 1028 |
| XapI | RAATTY | 4 cut(s) | 163, 486, 815, 942 |
| XbaI | TCTAGA | 1 cut(s) | 367 |
| XceI | RCATGY | 1 cut(s) | 140 |
| XspI | CTAG | 4 cut(s) | 36, 368, 447, 1032 |